Information for 9-TGCACGGW (Motif 6)


Reverse Opposite:

p-value:1e-33
log p-value:-7.765e+01
Information Content per bp:1.683
Number of Target Sequences with motif910.0
Percentage of Target Sequences with motif20.39%
Number of Background Sequences with motif2736.0
Percentage of Background Sequences with motif13.73%
Average Position of motif in Targets493.8 +/- 380.0bp
Average Position of motif in Background296.6 +/- 230.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:1
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:TGCACGGW-
-GCACGTAY

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:2
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:TGCACGGW-
-GCACGTNC

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:TGCACGGW---
-GCACGTACCC

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TGCACGGW
BGCACGTA

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TGCACGGW-
TBGCACGCAA

BIM1/MA0964.1/Jaspar

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TGCACGGW-
NNNCACGTGN

Hes1/MA1099.1/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGCACGGW--
GGCACGCGTC

HBI1/MA1025.1/Jaspar

Match Rank:8
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TGCACGGW--
CGGGCACGTGCT

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TGCACGGW
--CACGCA

ABI4(2)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:10
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TGCACGGW
GGNNGCACCG-