Information for 13-TCCGTACA (Motif 8)


Reverse Opposite:

p-value:1e-23
log p-value:-5.458e+01
Information Content per bp:1.899
Number of Target Sequences with motif431.0
Percentage of Target Sequences with motif12.97%
Number of Background Sequences with motif1684.3
Percentage of Background Sequences with motif7.83%
Average Position of motif in Targets366.1 +/- 276.6bp
Average Position of motif in Background253.7 +/- 186.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SPL14(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:1
Score:0.90
Offset:-5
Orientation:forward strand
Alignment:-----TCCGTACA------
TCGCGTCCGTACAGGAGGG

SPL14/MA0586.1/Jaspar

Match Rank:2
Score:0.90
Offset:-5
Orientation:forward strand
Alignment:-----TCCGTACA------
TCGCGTCCGTACAGGAGGG

FHL1(MacIsaac)/Yeast

Match Rank:3
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-TCCGTACA-
ATCCGTACAT

SFP1/SFP1_SM/50-RAP1(Harbison)/Yeast

Match Rank:4
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-TCCGTACA-
ACCCGTACAT

SPL5/MA1059.1/Jaspar

Match Rank:5
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:TCCGTACA-
NCCGTACNN

SPL12/MA1057.1/Jaspar

Match Rank:6
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:TCCGTACA
NCCGTACN

SPL11/MA1056.1/Jaspar

Match Rank:7
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-TCCGTACA---
NTCCGTACGNNN

SFP1(MacIsaac)/Yeast

Match Rank:8
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-TCCGTACA-
ACCCGTACAT

FHL1/FHL1_YPD/47-RAP1(Harbison)/Yeast

Match Rank:9
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TCCGTACA-
CACCCGTACAT

POPTR_0002s00440g/MA0955.1/Jaspar

Match Rank:10
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:TCCGTACA
-CCGTACN