Information for 5-CGGCSCGG (Motif 4)


Reverse Opposite:

p-value:1e-50
log p-value:-1.157e+02
Information Content per bp:1.595
Number of Target Sequences with motif1275.0
Percentage of Target Sequences with motif38.36%
Number of Background Sequences with motif5686.3
Percentage of Background Sequences with motif26.43%
Average Position of motif in Targets442.5 +/- 355.4bp
Average Position of motif in Background254.6 +/- 235.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.55
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SKN7(MacIsaac)/Yeast

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:CGGCSCGG-
-GGCCCGGA

SKN7/SKN7_H2O2Lo/[](Harbison)/Yeast

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CGGCSCGG-
GGCCCNGGC

POL006.1_BREu/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CGGCSCGG-
-GGCGCGCT

STB4/STB4_YPD/[](Harbison)/Yeast

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CGGCSCGG
TCGGNNCGA

STB4(MacIsaac)/Yeast

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CGGCSCGG
TCGGNNCGA

SUT1/SUT1_YPD/[](Harbison)/Yeast

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CGGCSCGG
GCGGGGCCGG

PB0202.1_Zfp410_2/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CGGCSCGG-----
NNTNNGGGGCGGNGNGN

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CGGCSCGG----
NAGANTGGCGGGGNGNA

PB0039.1_Klf7_1/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CGGCSCGG----
NNAGGGGCGGGGTNNA

SKN7/MA0381.1/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGGCSCGG
-GGCCAT-