Information for 20-VMGCCGGC (Motif 12)


Reverse Opposite:

p-value:1e-17
log p-value:-4.042e+01
Information Content per bp:1.694
Number of Target Sequences with motif616.0
Percentage of Target Sequences with motif18.53%
Number of Background Sequences with motif2837.8
Percentage of Background Sequences with motif13.19%
Average Position of motif in Targets402.4 +/- 313.0bp
Average Position of motif in Background264.0 +/- 225.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ERF6/MA1006.1/Jaspar

Match Rank:1
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:VMGCCGGC--
NCGCCGGCAN

ERF105/MA1000.1/Jaspar

Match Rank:2
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:VMGCCGGC-
-CGCCGGCA

ERF098/MA0999.1/Jaspar

Match Rank:3
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:VMGCCGGC--
--GGCGGCNN

ERF096/MA0998.1/Jaspar

Match Rank:4
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:VMGCCGGC--
NNGGCGGCGN

ERF13/MA1004.1/Jaspar

Match Rank:5
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:VMGCCGGC-
-TGGCGGCG

ERF094/MA1049.1/Jaspar

Match Rank:6
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:VMGCCGGC-
-CGGCGGCG

ERF7/MA0993.1/Jaspar

Match Rank:7
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-VMGCCGGC-
NNTGGCGGCG

NtERF2(AP2/EREBP)/Nicotiana tabacum/AthaMap

Match Rank:8
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:VMGCCGGC-
--GGCGGCG

ERF4/MA0992.1/Jaspar

Match Rank:9
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:VMGCCGGC--
--GGCGGCGG

brk/dmmpmm(Down)/fly

Match Rank:10
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-VMGCCGGC
AGCGCCGG-