| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
PDF |
| 1 |  | ABF1/SacCer-Promoters/Homer | 1e-189 | -4.360e+02 | 0.0000 | 1201.0 | 34.96% | 3033.2 | 14.75% | motif file (matrix) |
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| 2 |  | REB1/SacCer-Promoters/Homer | 1e-161 | -3.720e+02 | 0.0000 | 768.0 | 22.36% | 1553.2 | 7.55% | motif file (matrix) |
pdf |
| 3 |  | RLR1?/SacCer-Promoters/Homer | 1e-60 | -1.392e+02 | 0.0000 | 1530.0 | 44.54% | 6401.1 | 31.12% | motif file (matrix) |
pdf |
| 4 |  | SeqBias: CG-repeat | 1e-52 | -1.205e+02 | 0.0000 | 704.0 | 20.49% | 2345.5 | 11.40% | motif file (matrix) |
pdf |
| 5 |  | c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-43 | -9.970e+01 | 0.0000 | 472.0 | 13.74% | 1434.4 | 6.97% | motif file (matrix) |
pdf |
| 6 |  | n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-42 | -9.723e+01 | 0.0000 | 557.0 | 16.22% | 1826.8 | 8.88% | motif file (matrix) |
pdf |
| 7 |  | DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer | 1e-38 | -8.772e+01 | 0.0000 | 875.0 | 25.47% | 3436.2 | 16.71% | motif file (matrix) |
pdf |
| 8 |  | bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-37 | -8.721e+01 | 0.0000 | 360.0 | 10.48% | 1027.6 | 5.00% | motif file (matrix) |
pdf |
| 9 |  | Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer | 1e-33 | -7.621e+01 | 0.0000 | 325.0 | 9.46% | 939.1 | 4.57% | motif file (matrix) |
pdf |
| 10 |  | CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-32 | -7.368e+01 | 0.0000 | 454.0 | 13.22% | 1518.1 | 7.38% | motif file (matrix) |
pdf |
| 11 |  | SFP1/SacCer-Promoters/Homer | 1e-31 | -7.262e+01 | 0.0000 | 474.0 | 13.80% | 1617.2 | 7.86% | motif file (matrix) |
pdf |
| 12 |  | Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-29 | -6.734e+01 | 0.0000 | 312.0 | 9.08% | 933.6 | 4.54% | motif file (matrix) |
pdf |
| 13 |  | Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-26 | -6.036e+01 | 0.0000 | 482.0 | 14.03% | 1750.7 | 8.51% | motif file (matrix) |
pdf |
| 14 |  | USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-25 | -5.977e+01 | 0.0000 | 383.0 | 11.15% | 1294.7 | 6.29% | motif file (matrix) |
pdf |
| 15 |  | PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer | 1e-25 | -5.850e+01 | 0.0000 | 708.0 | 20.61% | 2883.2 | 14.02% | motif file (matrix) |
pdf |
| 16 |  | IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer | 1e-25 | -5.817e+01 | 0.0000 | 1105.0 | 32.17% | 4987.5 | 24.25% | motif file (matrix) |
pdf |
| 17 |  | PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer | 1e-25 | -5.800e+01 | 0.0000 | 783.0 | 22.79% | 3274.5 | 15.92% | motif file (matrix) |
pdf |
| 18 |  | E-box/Arabidopsis-Promoters/Homer | 1e-25 | -5.765e+01 | 0.0000 | 430.0 | 12.52% | 1528.0 | 7.43% | motif file (matrix) |
pdf |
| 19 |  | E-box(bHLH)/Promoter/Homer | 1e-24 | -5.735e+01 | 0.0000 | 113.0 | 3.29% | 212.3 | 1.03% | motif file (matrix) |
pdf |
| 20 |  | Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer | 1e-24 | -5.583e+01 | 0.0000 | 360.0 | 10.48% | 1218.6 | 5.92% | motif file (matrix) |
pdf |
| 21 |  | SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer | 1e-22 | -5.231e+01 | 0.0000 | 888.0 | 25.85% | 3896.0 | 18.94% | motif file (matrix) |
pdf |
| 22 |  | E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-21 | -4.846e+01 | 0.0000 | 660.0 | 19.21% | 2751.7 | 13.38% | motif file (matrix) |
pdf |
| 23 |  | NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-20 | -4.833e+01 | 0.0000 | 663.0 | 19.30% | 2768.3 | 13.46% | motif file (matrix) |
pdf |
| 24 |  | FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer | 1e-18 | -4.358e+01 | 0.0000 | 350.0 | 10.19% | 1268.9 | 6.17% | motif file (matrix) |
pdf |
| 25 |  | MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-15 | -3.481e+01 | 0.0000 | 631.0 | 18.37% | 2776.9 | 13.50% | motif file (matrix) |
pdf |
| 26 |  | TATA-box/SacCer-Promoters/Homer | 1e-14 | -3.319e+01 | 0.0000 | 1376.0 | 40.06% | 6930.6 | 33.69% | motif file (matrix) |
pdf |
| 27 |  | BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-14 | -3.228e+01 | 0.0000 | 1126.0 | 32.78% | 5524.0 | 26.86% | motif file (matrix) |
pdf |
| 28 |  | Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer | 1e-13 | -3.020e+01 | 0.0000 | 836.0 | 24.34% | 3951.9 | 19.21% | motif file (matrix) |
pdf |
| 29 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-12 | -2.984e+01 | 0.0000 | 107.0 | 3.11% | 288.5 | 1.40% | motif file (matrix) |
pdf |
| 30 |  | SUT1?/SacCer-Promoters/Homer | 1e-12 | -2.964e+01 | 0.0000 | 2412.0 | 70.22% | 13228.7 | 64.31% | motif file (matrix) |
pdf |
| 31 |  | c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-12 | -2.842e+01 | 0.0000 | 284.0 | 8.27% | 1094.0 | 5.32% | motif file (matrix) |
pdf |
| 32 |  | ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-12 | -2.838e+01 | 0.0000 | 256.0 | 7.45% | 959.4 | 4.66% | motif file (matrix) |
pdf |
| 33 |  | SeqBias: TA-repeat | 1e-11 | -2.743e+01 | 0.0000 | 2939.0 | 85.56% | 16663.6 | 81.01% | motif file (matrix) |
pdf |
| 34 |  | TOD6?/SacCer-Promoters/Homer | 1e-10 | -2.507e+01 | 0.0000 | 247.0 | 7.19% | 948.8 | 4.61% | motif file (matrix) |
pdf |
| 35 |  | KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer | 1e-9 | -2.268e+01 | 0.0000 | 202.0 | 5.88% | 756.4 | 3.68% | motif file (matrix) |
pdf |
| 36 |  | Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer | 1e-9 | -2.267e+01 | 0.0000 | 138.0 | 4.02% | 461.8 | 2.24% | motif file (matrix) |
pdf |
| 37 |  | KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-9 | -2.238e+01 | 0.0000 | 447.0 | 13.01% | 1994.6 | 9.70% | motif file (matrix) |
pdf |
| 38 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-9 | -2.144e+01 | 0.0000 | 473.0 | 13.77% | 2146.6 | 10.44% | motif file (matrix) |
pdf |
| 39 |  | GAGA-repeat/Arabidopsis-Promoters/Homer | 1e-9 | -2.087e+01 | 0.0000 | 416.0 | 12.11% | 1855.7 | 9.02% | motif file (matrix) |
pdf |
| 40 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-8 | -1.948e+01 | 0.0000 | 419.0 | 12.20% | 1893.5 | 9.21% | motif file (matrix) |
pdf |
| 41 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-7 | -1.704e+01 | 0.0000 | 232.0 | 6.75% | 964.3 | 4.69% | motif file (matrix) |
pdf |
| 42 |  | HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-6 | -1.603e+01 | 0.0000 | 1279.0 | 37.23% | 6792.8 | 33.02% | motif file (matrix) |
pdf |
| 43 |  | Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-6 | -1.570e+01 | 0.0000 | 124.0 | 3.61% | 453.5 | 2.20% | motif file (matrix) |
pdf |
| 44 |  | E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer | 1e-6 | -1.539e+01 | 0.0000 | 157.0 | 4.57% | 613.1 | 2.98% | motif file (matrix) |
pdf |
| 45 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-6 | -1.516e+01 | 0.0000 | 372.0 | 10.83% | 1718.3 | 8.35% | motif file (matrix) |
pdf |
| 46 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-6 | -1.504e+01 | 0.0000 | 249.0 | 7.25% | 1077.4 | 5.24% | motif file (matrix) |
pdf |
| 47 |  | PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-6 | -1.477e+01 | 0.0000 | 1091.0 | 31.76% | 5742.7 | 27.92% | motif file (matrix) |
pdf |
| 48 |  | Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-5 | -1.342e+01 | 0.0000 | 101.0 | 2.94% | 366.2 | 1.78% | motif file (matrix) |
pdf |
| 49 |  | HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-5 | -1.309e+01 | 0.0000 | 574.0 | 16.71% | 2861.2 | 13.91% | motif file (matrix) |
pdf |
| 50 |  | Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer | 1e-5 | -1.269e+01 | 0.0000 | 114.0 | 3.32% | 435.0 | 2.11% | motif file (matrix) |
pdf |
| 51 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-5 | -1.256e+01 | 0.0000 | 168.0 | 4.89% | 700.2 | 3.40% | motif file (matrix) |
pdf |
| 52 |  | HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-5 | -1.240e+01 | 0.0000 | 368.0 | 10.71% | 1749.5 | 8.50% | motif file (matrix) |
pdf |
| 53 |  | PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-5 | -1.239e+01 | 0.0000 | 186.0 | 5.41% | 793.8 | 3.86% | motif file (matrix) |
pdf |
| 54 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.204e+01 | 0.0000 | 488.0 | 14.21% | 2411.1 | 11.72% | motif file (matrix) |
pdf |
| 55 |  | Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.189e+01 | 0.0000 | 810.0 | 23.58% | 4221.6 | 20.52% | motif file (matrix) |
pdf |
| 56 |  | E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer | 1e-5 | -1.168e+01 | 0.0001 | 101.0 | 2.94% | 382.8 | 1.86% | motif file (matrix) |
pdf |
| 57 |  | EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-4 | -1.125e+01 | 0.0001 | 87.0 | 2.53% | 321.0 | 1.56% | motif file (matrix) |
pdf |
| 58 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-4 | -1.091e+01 | 0.0001 | 71.0 | 2.07% | 249.8 | 1.21% | motif file (matrix) |
pdf |
| 59 |  | ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer | 1e-4 | -1.062e+01 | 0.0002 | 42.0 | 1.22% | 124.3 | 0.60% | motif file (matrix) |
pdf |
| 60 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-4 | -1.050e+01 | 0.0002 | 432.0 | 12.58% | 2140.5 | 10.41% | motif file (matrix) |
pdf |
| 61 |  | ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer | 1e-4 | -1.023e+01 | 0.0002 | 49.0 | 1.43% | 156.1 | 0.76% | motif file (matrix) |
pdf |
| 62 |  | CRE(bZIP)/Promoter/Homer | 1e-4 | -9.972e+00 | 0.0003 | 154.0 | 4.48% | 665.0 | 3.23% | motif file (matrix) |
pdf |
| 63 |  | GAGA-repeat/SacCer-Promoters/Homer | 1e-4 | -9.686e+00 | 0.0004 | 2628.0 | 76.51% | 15147.2 | 73.64% | motif file (matrix) |
pdf |
| 64 |  | Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-4 | -9.632e+00 | 0.0004 | 155.0 | 4.51% | 674.3 | 3.28% | motif file (matrix) |
pdf |
| 65 |  | Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.449e+00 | 0.0005 | 661.0 | 19.24% | 3451.1 | 16.78% | motif file (matrix) |
pdf |
| 66 |  | Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer | 1e-4 | -9.312e+00 | 0.0005 | 1307.0 | 38.05% | 7193.2 | 34.97% | motif file (matrix) |
pdf |
| 67 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-3 | -9.088e+00 | 0.0007 | 551.0 | 16.04% | 2841.4 | 13.81% | motif file (matrix) |
pdf |
| 68 |  | NRF(NRF)/Promoter/Homer | 1e-3 | -8.481e+00 | 0.0012 | 78.0 | 2.27% | 304.4 | 1.48% | motif file (matrix) |
pdf |
| 69 |  | Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-3 | -8.274e+00 | 0.0014 | 1038.0 | 30.22% | 5663.3 | 27.53% | motif file (matrix) |
pdf |
| 70 |  | Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-3 | -8.240e+00 | 0.0015 | 332.0 | 9.67% | 1646.3 | 8.00% | motif file (matrix) |
pdf |
| 71 |  | TATA-box/Drosophila-Promoters/Homer | 1e-3 | -7.887e+00 | 0.0020 | 154.0 | 4.48% | 696.5 | 3.39% | motif file (matrix) |
pdf |
| 72 |  | E2F(E2F)/Hela-CellCycle-Expression/Homer | 1e-3 | -7.823e+00 | 0.0022 | 99.0 | 2.88% | 415.7 | 2.02% | motif file (matrix) |
pdf |
| 73 |  | Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-3 | -7.139e+00 | 0.0042 | 165.0 | 4.80% | 767.8 | 3.73% | motif file (matrix) |
pdf |
| 74 |  | E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.845e+00 | 0.0056 | 213.0 | 6.20% | 1030.9 | 5.01% | motif file (matrix) |
pdf |
| 75 |  | PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-2 | -6.803e+00 | 0.0057 | 27.0 | 0.79% | 83.7 | 0.41% | motif file (matrix) |
pdf |
| 76 |  | Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer | 1e-2 | -6.796e+00 | 0.0057 | 85.0 | 2.47% | 358.9 | 1.74% | motif file (matrix) |
pdf |
| 77 |  | SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer | 1e-2 | -6.321e+00 | 0.0090 | 204.0 | 5.94% | 993.3 | 4.83% | motif file (matrix) |
pdf |
| 78 |  | GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer | 1e-2 | -6.262e+00 | 0.0095 | 37.0 | 1.08% | 131.1 | 0.64% | motif file (matrix) |
pdf |
| 79 |  | Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer | 1e-2 | -6.082e+00 | 0.0112 | 163.0 | 4.75% | 777.1 | 3.78% | motif file (matrix) |
pdf |
| 80 |  | Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-2 | -5.923e+00 | 0.0130 | 73.0 | 2.13% | 309.2 | 1.50% | motif file (matrix) |
pdf |
| 81 |  | ETS(ETS)/Promoter/Homer | 1e-2 | -5.613e+00 | 0.0174 | 258.0 | 7.51% | 1307.3 | 6.36% | motif file (matrix) |
pdf |
| 82 |  | ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer | 1e-2 | -5.565e+00 | 0.0181 | 105.0 | 3.06% | 479.5 | 2.33% | motif file (matrix) |
pdf |
| 83 |  | Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.502e+00 | 0.0190 | 203.0 | 5.91% | 1007.8 | 4.90% | motif file (matrix) |
pdf |
| 84 |  | NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-2 | -5.483e+00 | 0.0192 | 50.0 | 1.46% | 200.9 | 0.98% | motif file (matrix) |
pdf |
| 85 |  | RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-2 | -5.263e+00 | 0.0236 | 393.0 | 11.44% | 2075.7 | 10.09% | motif file (matrix) |
pdf |
| 86 |  | ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-2 | -5.229e+00 | 0.0241 | 890.0 | 25.91% | 4941.4 | 24.02% | motif file (matrix) |
pdf |
| 87 |  | Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.188e+00 | 0.0248 | 99.0 | 2.88% | 454.3 | 2.21% | motif file (matrix) |
pdf |
| 88 |  | Sp1(Zf)/Promoter/Homer | 1e-2 | -5.097e+00 | 0.0269 | 43.0 | 1.25% | 171.0 | 0.83% | motif file (matrix) |
pdf |
| 89 |  | ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer | 1e-2 | -5.093e+00 | 0.0269 | 622.0 | 18.11% | 3392.9 | 16.49% | motif file (matrix) |
pdf |
| 90 |  | PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-2 | -4.799e+00 | 0.0354 | 375.0 | 10.92% | 1990.8 | 9.68% | motif file (matrix) |
pdf |
| 91 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.745e+00 | 0.0370 | 75.0 | 2.18% | 336.7 | 1.64% | motif file (matrix) |
pdf |
| 92 |  | p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer | 1e-2 | -4.623e+00 | 0.0409 | 51.0 | 1.48% | 215.9 | 1.05% | motif file (matrix) |
pdf |
| 93 |  | p53(p53)/Saos-p53-ChIP-Seq/Homer | 1e-2 | -4.623e+00 | 0.0409 | 51.0 | 1.48% | 215.9 | 1.05% | motif file (matrix) |
pdf |