Information for 7-CACACACA (Motif 5)


Reverse Opposite:

p-value:1e-39
log p-value:-9.118e+01
Information Content per bp:1.855
Number of Target Sequences with motif627.0
Percentage of Target Sequences with motif18.25%
Number of Background Sequences with motif2192.1
Percentage of Background Sequences with motif10.66%
Average Position of motif in Targets418.2 +/- 317.7bp
Average Position of motif in Background271.8 +/- 251.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.52
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: CA-repeat

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CACACACA--
CACACACACA

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----CACACACA---
AGCGGCACACACGCAA

daf-12/MA0538.1/Jaspar

Match Rank:3
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----CACACACA---
NACGCACACACACAC

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:4
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CACACACA--
YCCGCCCACGCN

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CACACACA--
CRCCCACGCA

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CACACACA
CACGCA--

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CACACACA
GCCACACCCA

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:8
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CACACACA-
GGCCACACCCAN

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CACACACA
TBGCACGCAA-

Klf1/MA0493.1/Jaspar

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CACACACA
GGCCACACCCA