Information for 3-SRCGCGCG (Motif 3)


Reverse Opposite:

p-value:1e-71
log p-value:-1.652e+02
Information Content per bp:1.553
Number of Target Sequences with motif1229.0
Percentage of Target Sequences with motif35.78%
Number of Background Sequences with motif4580.6
Percentage of Background Sequences with motif22.27%
Average Position of motif in Targets419.3 +/- 318.0bp
Average Position of motif in Background270.2 +/- 259.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RSC3/MA0374.1/Jaspar

Match Rank:1
Score:0.91
Offset:2
Orientation:forward strand
Alignment:SRCGCGCG-
--CGCGCGG

RSC30/MA0375.1/Jaspar

Match Rank:2
Score:0.89
Offset:0
Orientation:forward strand
Alignment:SRCGCGCG
CGCGCGCG

DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer

Match Rank:3
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-SRCGCGCG
TAGCGCGC-

PB0008.1_E2F2_1/Jaspar

Match Rank:4
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----SRCGCGCG--
ATAAAGGCGCGCGAT

MBP1/MA0329.1/Jaspar

Match Rank:5
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:SRCGCGCG
NNCGCGT-

PB0095.1_Zfp161_1/Jaspar

Match Rank:6
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---SRCGCGCG-----
TGGCGCGCGCGCCTGA

SWI6(MacIsaac)/Yeast

Match Rank:7
Score:0.78
Offset:0
Orientation:forward strand
Alignment:SRCGCGCG
GACGCG--

h/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--SRCGCGCG----
NTGGCGCGTGCCNN

PB0009.1_E2F3_1/Jaspar

Match Rank:9
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----SRCGCGCG--
ATAAGGGCGCGCGAT

FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer

Match Rank:10
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--SRCGCGCG--
NAVGCGCGTGDD