Information for 25-CGCCACAC (Motif 17)


Reverse Opposite:

p-value:1e-8
log p-value:-1.947e+01
Information Content per bp:1.530
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif1.69%
Number of Background Sequences with motif145.2
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets305.0 +/- 206.4bp
Average Position of motif in Background309.0 +/- 232.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MET31/MA0333.1/Jaspar

Match Rank:1
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:CGCCACAC-
CGCCACANN

MET31(MacIsaac)/Yeast

Match Rank:2
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:CGCCACAC-
-GCCACACC

MET32/MA0334.1/Jaspar

Match Rank:3
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CGCCACAC
CGCCACA-

RPN4/MA0373.1/Jaspar

Match Rank:4
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CGCCACAC
CGCCACC-

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CGCCACAC---
-GCCACACCCA

ALFIN1(HD-PHD)/Medicago sativa/AthaMap

Match Rank:6
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CGCCACAC---
-GCCCCACCTC

brk/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CGCCACAC
AGCGCCA---

MET32(MacIsaac)/Yeast

Match Rank:8
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CGCCACAC---
-GCCACAGTTT

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:9
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CGCCACAC----
GGCCACACCCAN

CRZ1/MA0285.1/Jaspar

Match Rank:10
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CGCCACAC
CTAAGCCAC--