Information for 22-RYAGTGAG (Motif 16)


Reverse Opposite:

p-value:1e-16
log p-value:-3.826e+01
Information Content per bp:1.634
Number of Target Sequences with motif487.0
Percentage of Target Sequences with motif14.18%
Number of Background Sequences with motif1990.4
Percentage of Background Sequences with motif9.68%
Average Position of motif in Targets393.7 +/- 332.7bp
Average Position of motif in Background274.1 +/- 202.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl/dmmpmm(Pollard)/fly

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:RYAGTGAG---
-GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:RYAGTGAG---
-GAGAGAGCAA

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--RYAGTGAG
RGAGAGAGAG

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:RYAGTGAG
RGAGAGAG

MET31(MacIsaac)/Yeast

Match Rank:5
Score:0.68
Offset:2
Orientation:forward strand
Alignment:RYAGTGAG--
--GGTGTGGC

z/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.66
Offset:4
Orientation:forward strand
Alignment:RYAGTGAG--
----TGAGTG

Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RYAGTGAG-----
-CAGTGTGACCRK

z/dmmpmm(Down)/fly

Match Rank:8
Score:0.65
Offset:4
Orientation:forward strand
Alignment:RYAGTGAG--
----TGAGTG

SeqBias: GA-repeat

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-RYAGTGAG-
GAGAGAGAGA

Trl/dmmpmm(Bigfoot)/fly

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:RYAGTGAG-----
AGAGAGAGAGNAA