Information for 17-CGGTTCGA (Motif 12)


Reverse Opposite:

p-value:1e-23
log p-value:-5.494e+01
Information Content per bp:1.928
Number of Target Sequences with motif197.0
Percentage of Target Sequences with motif5.74%
Number of Background Sequences with motif525.4
Percentage of Background Sequences with motif2.55%
Average Position of motif in Targets317.9 +/- 291.4bp
Average Position of motif in Background273.3 +/- 203.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

OPI1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:CGGTTCGA
-GATTCGA

OPI1(MacIsaac)/Yeast

Match Rank:2
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:CGGTTCGA
CGGTTCG-

OPI1/MA0349.1/Jaspar

Match Rank:3
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:CGGTTCGA
CGGTTCG-

STB4/STB4_YPD/[](Harbison)/Yeast

Match Rank:4
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CGGTTCGA
TCGGNNCGA

STB4(MacIsaac)/Yeast

Match Rank:5
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CGGTTCGA
TCGGNNCGA

YER051W(MacIsaac)/Yeast

Match Rank:6
Score:0.74
Offset:3
Orientation:forward strand
Alignment:CGGTTCGA-
---TTCGAA

XBP1/MA0414.1/Jaspar

Match Rank:7
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CGGTTCGA-
--NCTCGAG

Unknown3/Arabidopsis-Promoters/Homer

Match Rank:8
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CGGTTCGA-
CCGGTTTART

lin-14/MA0261.1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CGGTTCGA
GTGTTC--

MA0261.1_lin-14/Jaspar

Match Rank:10
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CGGTTCGA
GTGTTC--