Information for 15-CGCTGTGC (Motif 11)


Reverse Opposite:

p-value:1e-25
log p-value:-5.910e+01
Information Content per bp:1.810
Number of Target Sequences with motif554.0
Percentage of Target Sequences with motif16.13%
Number of Background Sequences with motif2108.8
Percentage of Background Sequences with motif10.25%
Average Position of motif in Targets427.5 +/- 416.7bp
Average Position of motif in Background271.7 +/- 227.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CGCTGTGC-
CGCGCTGAGCN

CDC5/MA0579.1/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CGCTGTGC-
CGCGCTGAGCN

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CGCTGTGC
-GCTGTG-

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CGCTGTGC--
NNTCCTGCTGTGNNN

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CGCTGTGC----
--CTGTTCCTGG

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CGCTGTGC
NGCTN---

MET28/MA0332.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CGCTGTGC
--CTGTGG

MET28(MacIsaac)/Yeast

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CGCTGTGC
--CTGTGG

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CGCTGTGC
CCTGCTGAGH

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CGCTGTGC--
TNTCCTGCTGTGNNG