Information for 5-CGCCGCGC (Motif 5)


Reverse Opposite:

p-value:1e-46
log p-value:-1.072e+02
Information Content per bp:1.632
Number of Target Sequences with motif1155.0
Percentage of Target Sequences with motif29.78%
Number of Background Sequences with motif4038.2
Percentage of Background Sequences with motif20.03%
Average Position of motif in Targets441.5 +/- 354.9bp
Average Position of motif in Background286.7 +/- 258.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.46
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

STP1(MacIsaac)/Yeast

Match Rank:1
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-CGCCGCGC
GCGCCGCA-

STP1/MA0394.1/Jaspar

Match Rank:2
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-CGCCGCGC
GCGCCGCA-

SUT1?/SacCer-Promoters/Homer

Match Rank:3
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CGCCGCGC
CCCCGCGC

SUT1(MacIsaac)/Yeast

Match Rank:4
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CGCCGCGC
CCCCGCG-

SUT1/MA0399.1/Jaspar

Match Rank:5
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CGCCGCGC
CCCCGCG-

CRF2/MA0975.1/Jaspar

Match Rank:6
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CGCCGCGC
CCGCCGCC-

ERF069/MA0997.1/Jaspar

Match Rank:7
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CGCCGCGC
GCGCCGCCA

STP2/MA0395.1/Jaspar

Match Rank:8
Score:0.74
Offset:-7
Orientation:forward strand
Alignment:-------CGCCGCGC-----
TGATCGGCGCCGCACGACGA

CRF4/MA0976.1/Jaspar

Match Rank:9
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CGCCGCGC
GCGCCGCC-

ERF109/MA1053.1/Jaspar

Match Rank:10
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CGCCGCGC
GCGCCGCC-