Information for 4-CCGCGKAG (Motif 4)


Reverse Opposite:

p-value:1e-57
log p-value:-1.327e+02
Information Content per bp:1.520
Number of Target Sequences with motif1634.0
Percentage of Target Sequences with motif42.12%
Number of Background Sequences with motif6033.2
Percentage of Background Sequences with motif29.93%
Average Position of motif in Targets474.7 +/- 396.1bp
Average Position of motif in Background288.3 +/- 237.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

IME1/MA0320.1/Jaspar

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:CCGCGKAG
CCGCCGAG

IME1(MacIsaac)/Yeast

Match Rank:2
Score:0.86
Offset:0
Orientation:forward strand
Alignment:CCGCGKAG
CCGCCGAG

CHA4/MA0283.1/Jaspar

Match Rank:3
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CCGCGKAG-
-GGCGGAGA

SUT1/MA0399.1/Jaspar

Match Rank:4
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CCGCGKAG
-CGCGGGG

SUT1(MacIsaac)/Yeast

Match Rank:5
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CCGCGKAG
-CGCGGGG

PDR3/MA0353.1/Jaspar

Match Rank:6
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CCGCGKAG
TCCGCGGA-

PDR3/Literature(Harbison)/Yeast

Match Rank:7
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CCGCGKAG
TCCGCGGA-

PDR3(MacIsaac)/Yeast

Match Rank:8
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CCGCGKAG
TCCGCGGA-

PDR1/MA0352.1/Jaspar

Match Rank:9
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CCGCGKAG
TCCGCGGA-

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:10
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CCGCGKAG--
CGCGCTGAGCN