Information for 3-CGCGCGCG (Motif 3)


Reverse Opposite:

p-value:1e-78
log p-value:-1.800e+02
Information Content per bp:1.470
Number of Target Sequences with motif1280.0
Percentage of Target Sequences with motif33.00%
Number of Background Sequences with motif4055.0
Percentage of Background Sequences with motif20.12%
Average Position of motif in Targets461.2 +/- 346.3bp
Average Position of motif in Background279.6 +/- 268.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.52
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RSC30/MA0375.1/Jaspar

Match Rank:1
Score:0.96
Offset:0
Orientation:forward strand
Alignment:CGCGCGCG
CGCGCGCG

SeqBias: CG-repeat

Match Rank:2
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CGCGCGCG--
CGCGCGCGCG

PB0095.1_Zfp161_1/Jaspar

Match Rank:3
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---CGCGCGCG-----
TGGCGCGCGCGCCTGA

RSC3/MA0374.1/Jaspar

Match Rank:4
Score:0.87
Offset:2
Orientation:forward strand
Alignment:CGCGCGCG-
--CGCGCGG

PB0008.1_E2F2_1/Jaspar

Match Rank:5
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--CGCGCGCG-----
NTCGCGCGCCTTNNN

DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer

Match Rank:6
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-CGCGCGCG
TAGCGCGC-

PB0009.1_E2F3_1/Jaspar

Match Rank:7
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--CGCGCGCG-----
ANCGCGCGCCCTTNN

Tcfl5/MA0632.1/Jaspar

Match Rank:8
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CGCGCGCG
GGCACGTGCC

FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer

Match Rank:9
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CGCGCGCG--
HHCACGCGCBTN

FHY3/MA0557.1/Jaspar

Match Rank:10
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CGCGCGCG--
CTCACGCGCTCA