Information for 2-RAAAAAAA (Motif 2)


Reverse Opposite:

p-value:1e-90
log p-value:-2.087e+02
Information Content per bp:1.879
Number of Target Sequences with motif1478.0
Percentage of Target Sequences with motif38.10%
Number of Background Sequences with motif4741.4
Percentage of Background Sequences with motif23.52%
Average Position of motif in Targets386.8 +/- 335.2bp
Average Position of motif in Background288.6 +/- 206.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.90
Offset:-5
Orientation:forward strand
Alignment:-----RAAAAAAA-
TACTGGAAAAAAAA

hb/dmmpmm(SeSiMCMC)/fly

Match Rank:2
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:RAAAAAAA
-AAAAAA-

PB0182.1_Srf_2/Jaspar

Match Rank:3
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----RAAAAAAA-----
GTTAAAAAAAAAAATTA

hb/dmmpmm(Down)/fly

Match Rank:4
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--RAAAAAAA
CATAAAAAA-

hb/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-RAAAAAAA
ATAAAAAA-

hb/dmmpmm(Noyes)/fly

Match Rank:6
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--RAAAAAAA--
ACNAAAAAAACA

hb/dmmpmm(Bigfoot)/fly

Match Rank:7
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--RAAAAAAA
CATAAAAAA-

SeqBias: polyA-repeat

Match Rank:8
Score:0.83
Offset:0
Orientation:forward strand
Alignment:RAAAAAAA--
AAAAAAAAAA

hb/MA0049.1/Jaspar

Match Rank:9
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--RAAAAAAA
GCATAAAAAA

hb/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-RAAAAAAA
CAAAAAAA-