Information for 9-TGCACGGA (Motif 6)


Reverse Opposite:

p-value:1e-30
log p-value:-7.109e+01
Information Content per bp:1.826
Number of Target Sequences with motif339.0
Percentage of Target Sequences with motif7.59%
Number of Background Sequences with motif775.0
Percentage of Background Sequences with motif3.81%
Average Position of motif in Targets425.4 +/- 318.8bp
Average Position of motif in Background300.3 +/- 213.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SPL14(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:1
Score:0.77
Offset:-6
Orientation:reverse strand
Alignment:------TGCACGGA-----
CCCTNCTGTACGGACGNNA

SPL14/MA0586.1/Jaspar

Match Rank:2
Score:0.77
Offset:-6
Orientation:reverse strand
Alignment:------TGCACGGA-----
CCCTNCTGTACGGACGNNA

FHL1(MacIsaac)/Yeast

Match Rank:3
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-TGCACGGA-
ATGTACGGAT

YKL222C/MA0428.1/Jaspar

Match Rank:4
Score:0.73
Offset:2
Orientation:forward strand
Alignment:TGCACGGA---
--AACGGAAAT

HAL9/MA0311.1/Jaspar

Match Rank:5
Score:0.73
Offset:4
Orientation:forward strand
Alignment:TGCACGGA-
----CGGAA

PDR3/MA0353.1/Jaspar

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGCACGGA
TCCGCGGA

PDR3/Literature(Harbison)/Yeast

Match Rank:7
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGCACGGA
TCCGCGGA

PDR3(MacIsaac)/Yeast

Match Rank:8
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGCACGGA
TCCGCGGA

FHL1/FHL1_YPD/47-RAP1(Harbison)/Yeast

Match Rank:9
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGCACGGA--
ATGTACGGGTG

SPL11/MA1056.1/Jaspar

Match Rank:10
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TGCACGGA-
TATCGTACGGAT