Information for 20-RAGWGAGA (Motif 14)


Reverse Opposite:

p-value:1e-18
log p-value:-4.179e+01
Information Content per bp:1.741
Number of Target Sequences with motif984.0
Percentage of Target Sequences with motif22.03%
Number of Background Sequences with motif3435.4
Percentage of Background Sequences with motif16.91%
Average Position of motif in Targets438.6 +/- 352.1bp
Average Position of motif in Background289.5 +/- 202.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:1
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-RAGWGAGA-
RGAGAGAGAG

Trl/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.82
Offset:0
Orientation:forward strand
Alignment:RAGWGAGA--
GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:3
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:RAGWGAGA--
GAGAGAGCAA

SeqBias: GA-repeat

Match Rank:4
Score:0.79
Offset:0
Orientation:forward strand
Alignment:RAGWGAGA--
GAGAGAGAGA

Trl/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-RAGWGAGA----
AGAGAGAGAGNAA

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:6
Score:0.76
Offset:1
Orientation:forward strand
Alignment:RAGWGAGA-
-RGAGAGAG

Su(H)/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.72
Offset:2
Orientation:forward strand
Alignment:RAGWGAGA-
--ATGAGAA

Trl/dmmpmm(Down)/fly

Match Rank:8
Score:0.72
Offset:0
Orientation:forward strand
Alignment:RAGWGAGA----
GAGAGAGAGAGC

PB0139.1_Irf5_2/Jaspar

Match Rank:9
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--RAGWGAGA-----
TTGACCGAGAATTCC

blmp-1/MA0537.1/Jaspar

Match Rank:10
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--RAGWGAGA-
AAAAGTGAAAA