Information for 16-GCCSTACM (Motif 12)


Reverse Opposite:

p-value:1e-21
log p-value:-4.925e+01
Information Content per bp:1.582
Number of Target Sequences with motif1739.0
Percentage of Target Sequences with motif38.93%
Number of Background Sequences with motif6523.4
Percentage of Background Sequences with motif32.11%
Average Position of motif in Targets428.5 +/- 339.5bp
Average Position of motif in Background293.7 +/- 210.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POPTR_0002s00440g/MA0955.1/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:GCCSTACM
-CCGTACN

TBF1/MA0403.1/Jaspar

Match Rank:2
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GCCSTACM
AACCCTAA-

TRB2/MA1073.1/Jaspar

Match Rank:3
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GCCSTACM
TGCCCTAA-

SPL5/MA1059.1/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GCCSTACM-
NCCGTACNN

P0510F09.23/MA1030.1/Jaspar

Match Rank:5
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GCCSTACM-
AACCCTAGAT

SPL14(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:6
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GCCSTACM------
TCGCGTCCGTACAGGAGGG

SPL14/MA0586.1/Jaspar

Match Rank:7
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GCCSTACM------
TCGCGTCCGTACAGGAGGG

RGM1/MA0366.1/Jaspar

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCCSTACM
CCCCT---

SFP1/SFP1_SM/50-RAP1(Harbison)/Yeast

Match Rank:9
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GCCSTACM-
ACCCGTACAT

SPL12/MA1057.1/Jaspar

Match Rank:10
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCCSTACM
NCCGTACN