Information for 12-CGGCTCGR (Motif 9)


Reverse Opposite:

p-value:1e-26
log p-value:-6.187e+01
Information Content per bp:1.681
Number of Target Sequences with motif789.0
Percentage of Target Sequences with motif18.21%
Number of Background Sequences with motif2492.6
Percentage of Background Sequences with motif12.46%
Average Position of motif in Targets504.7 +/- 452.3bp
Average Position of motif in Background295.9 +/- 222.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

STB4/STB4_YPD/[](Harbison)/Yeast

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CGGCTCGR
TCGGNNCGA

STB4(MacIsaac)/Yeast

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CGGCTCGR
TCGGNNCGA

XBP1/MA0414.1/Jaspar

Match Rank:3
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CGGCTCGR--
---CTCGAGA

SMAD3/MA0795.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CGGCTCGR--
CGTCTAGACA

OPI1(MacIsaac)/Yeast

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CGGCTCGR
CGGTTCG-

OPI1/Literature(Harbison)/Yeast

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGGCTCGR
-GATTCGA

STP1/MA0394.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CGGCTCGR
TGCGGCGC--

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CGGCTCGR
CTGTCTGG-

OPI1/MA0349.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGGCTCGR
CGGTTCG-

STP1(MacIsaac)/Yeast

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CGGCTCGR
TGCGGCGC--