Information for 18-CTSGGCCA (Motif 13)


Reverse Opposite:

p-value:1e-23
log p-value:-5.391e+01
Information Content per bp:1.731
Number of Target Sequences with motif231.0
Percentage of Target Sequences with motif5.33%
Number of Background Sequences with motif513.9
Percentage of Background Sequences with motif2.57%
Average Position of motif in Targets455.8 +/- 426.7bp
Average Position of motif in Background272.6 +/- 206.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SKN7(MacIsaac)/Yeast

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CTSGGCCA
TCCGGGCC-

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---CTSGGCCA
WDNCTGGGCA-

IME1/MA0320.1/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CTSGGCCA
CTCGGCGG

SKN7/MA0381.1/Jaspar

Match Rank:4
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CTSGGCCA-
---GGCCAT

IME1(MacIsaac)/Yeast

Match Rank:5
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CTSGGCCA
CTCGGCGG

RIM101/MA0368.1/Jaspar

Match Rank:6
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTSGGCCA
CTTGGCG-

PCF/Arabidopsis-Promoters/Homer

Match Rank:7
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CTSGGCCA---
NNWWWTGGGCYTDDN

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTSGGCCA
CTAGGCCT

SKN7/SKN7_H2O2Lo/[](Harbison)/Yeast

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTSGGCCA
GCCNGGGCC-

Zfx/MA0146.2/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CTSGGCCA-
GGGGCCGAGGCCTG