Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 4576)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 20980)	% of Background Sequences with Motif
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-238	-5.497e+02	0.0000	1555.0	33.98%	3035.8	14.47%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-190	-4.396e+02	0.0000	975.0	21.31%	1574.4	7.50%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-68	-1.570e+02	0.0000	2150.0	46.98%	7219.8	34.41%
SeqBias: CG-repeat	CGCGCGCGCG	1e-50	-1.163e+02	0.0000	796.0	17.40%	2119.3	10.10%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-48	-1.125e+02	0.0000	573.0	12.52%	1364.7	6.50%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-42	-9.841e+01	0.0000	684.0	14.95%	1821.8	8.68%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-41	-9.457e+01	0.0000	664.0	14.51%	1772.4	8.45%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-40	-9.396e+01	0.0000	416.0	9.09%	931.9	4.44%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-40	-9.259e+01	0.0000	1101.0	24.06%	3431.9	16.36%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-38	-8.765e+01	0.0000	416.0	9.09%	958.4	4.57%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-35	-8.222e+01	0.0000	421.0	9.20%	999.6	4.76%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-28	-6.653e+01	0.0000	472.0	10.31%	1256.4	5.99%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-28	-6.637e+01	0.0000	603.0	13.18%	1730.8	8.25%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-27	-6.341e+01	0.0000	544.0	11.89%	1534.0	7.31%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-27	-6.329e+01	0.0000	2111.0	46.13%	8009.4	38.17%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-24	-5.533e+01	0.0000	365.0	7.98%	947.9	4.52%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-23	-5.405e+01	0.0000	890.0	19.45%	2941.9	14.02%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-23	-5.396e+01	0.0000	511.0	11.17%	1479.4	7.05%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-22	-5.223e+01	0.0000	131.0	2.86%	220.8	1.05%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-22	-5.128e+01	0.0000	1123.0	24.54%	3919.1	18.68%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-21	-4.980e+01	0.0000	1350.0	29.50%	4887.2	23.29%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-20	-4.754e+01	0.0000	140.0	3.06%	258.1	1.23%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-19	-4.553e+01	0.0000	977.0	21.35%	3386.3	16.14%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-19	-4.459e+01	0.0000	412.0	9.00%	1183.3	5.64%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-17	-3.973e+01	0.0000	796.0	17.40%	2717.9	12.95%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-15	-3.574e+01	0.0000	349.0	7.63%	1017.1	4.85%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-15	-3.533e+01	0.0000	803.0	17.55%	2798.9	13.34%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-13	-3.028e+01	0.0000	324.0	7.08%	967.6	4.61%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-12	-2.822e+01	0.0000	563.0	12.30%	1914.1	9.12%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-12	-2.820e+01	0.0000	395.0	8.63%	1254.7	5.98%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-11	-2.695e+01	0.0000	240.0	5.24%	684.8	3.26%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-11	-2.641e+01	0.0000	779.0	17.02%	2819.4	13.44%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-11	-2.602e+01	0.0000	136.0	2.97%	328.4	1.57%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-10	-2.482e+01	0.0000	1043.0	22.79%	3957.0	18.86%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-10	-2.394e+01	0.0000	1418.0	30.99%	5594.5	26.66%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-10	-2.339e+01	0.0000	152.0	3.32%	397.0	1.89%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-9	-2.107e+01	0.0000	152.0	3.32%	410.2	1.95%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-8	-2.053e+01	0.0000	105.0	2.29%	253.2	1.21%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-8	-2.039e+01	0.0000	3046.0	66.56%	13078.2	62.33%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-8	-2.022e+01	0.0000	287.0	6.27%	916.4	4.37%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-8	-1.883e+01	0.0000	1673.0	36.56%	6835.3	32.58%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-7	-1.801e+01	0.0000	451.0	9.86%	1592.1	7.59%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-7	-1.784e+01	0.0000	301.0	6.58%	995.3	4.74%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-7	-1.702e+01	0.0000	520.0	11.36%	1889.9	9.01%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-7	-1.648e+01	0.0000	493.0	10.77%	1786.0	8.51%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-6	-1.591e+01	0.0000	798.0	17.44%	3077.1	14.67%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-6	-1.502e+01	0.0000	59.0	1.29%	130.5	0.62%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-6	-1.436e+01	0.0000	607.0	13.26%	2297.3	10.95%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-5	-1.179e+01	0.0001	1460.0	31.91%	6078.5	28.97%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-4	-1.104e+01	0.0001	229.0	5.00%	791.8	3.77%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-4	-1.087e+01	0.0001	197.0	4.31%	667.0	3.18%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-4	-1.020e+01	0.0003	73.0	1.60%	202.8	0.97%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-4	-1.020e+01	0.0003	73.0	1.60%	202.8	0.97%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-4	-1.002e+01	0.0003	44.0	0.96%	104.4	0.50%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-4	-9.903e+00	0.0004	191.0	4.17%	654.6	3.12%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-4	-9.620e+00	0.0005	712.0	15.56%	2849.3	13.58%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-4	-9.455e+00	0.0005	37.0	0.81%	85.0	0.41%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-4	-9.400e+00	0.0006	122.0	2.67%	390.9	1.86%
SeqBias: TA-repeat	TATATATATA	1e-3	-9.150e+00	0.0007	4024.0	87.94%	18058.0	86.06%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-3	-8.126e+00	0.0019	1025.0	22.40%	4264.6	20.32%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-3	-7.982e+00	0.0022	43.0	0.94%	111.5	0.53%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-3	-7.809e+00	0.0025	1718.0	37.54%	7377.6	35.16%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-3	-7.415e+00	0.0037	125.0	2.73%	423.5	2.02%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-3	-7.366e+00	0.0038	87.0	1.90%	276.7	1.32%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-3	-7.195e+00	0.0045	846.0	18.49%	3505.1	16.71%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-3	-7.067e+00	0.0050	215.0	4.70%	792.4	3.78%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-3	-7.059e+00	0.0050	293.0	6.40%	1117.0	5.32%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-6.676e+00	0.0072	185.0	4.04%	675.9	3.22%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e-2	-6.552e+00	0.0080	40.0	0.87%	109.5	0.52%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-2	-6.268e+00	0.0105	518.0	11.32%	2099.5	10.01%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-6.247e+00	0.0106	350.0	7.65%	1376.5	6.56%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-2	-6.218e+00	0.0107	116.0	2.53%	402.6	1.92%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-5.623e+00	0.0192	495.0	10.82%	2018.1	9.62%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-2	-5.554e+00	0.0202	191.0	4.17%	719.3	3.43%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-5.440e+00	0.0224	614.0	13.42%	2544.9	12.13%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-5.117e+00	0.0305	578.0	12.63%	2397.5	11.43%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-5.104e+00	0.0305	351.0	7.67%	1410.0	6.72%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-5.059e+00	0.0315	35.0	0.76%	101.1	0.48%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-5.050e+00	0.0315	69.0	1.51%	230.9	1.10%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-2	-5.008e+00	0.0323	36.0	0.79%	105.0	0.50%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-4.933e+00	0.0344	73.0	1.60%	247.7	1.18%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-2	-4.897e+00	0.0353	42.0	0.92%	128.6	0.61%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-2	-4.839e+00	0.0369	270.0	5.90%	1068.6	5.09%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-4.466e+00	0.0530	269.0	5.88%	1073.6	5.12%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-4.447e+00	0.0534	200.0	4.37%	779.4	3.71%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-4.438e+00	0.0534	471.0	10.29%	1951.1	9.30%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-4.240e+00	0.0641	101.0	2.21%	369.6	1.76%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-4.153e+00	0.0691	546.0	11.93%	2291.9	10.92%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-4.098e+00	0.0722	390.0	8.52%	1608.7	7.67%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-3.961e+00	0.0819	72.0	1.57%	255.4	1.22%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.894e+00	0.0866	246.0	5.38%	989.6	4.72%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-3.876e+00	0.0872	784.0	17.13%	3359.8	16.01%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.801e+00	0.0930	484.0	10.58%	2031.1	9.68%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-1	-3.608e+00	0.1116	502.0	10.97%	2118.2	10.10%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-3.596e+00	0.1117	41.0	0.90%	136.7	0.65%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-3.317e+00	0.1462	193.0	4.22%	776.1	3.70%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-3.095e+00	0.1806	124.0	2.71%	486.3	2.32%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-3.060e+00	0.1852	456.0	9.97%	1937.8	9.24%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-3.023e+00	0.1902	1167.0	25.50%	5127.2	24.44%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-3.020e+00	0.1902	1317.0	28.78%	5806.7	27.67%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.009e+00	0.1902	247.0	5.40%	1019.7	4.86%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-1	-2.841e+00	0.2214	1397.0	30.53%	6181.5	29.46%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.802e+00	0.2281	55.0	1.20%	202.7	0.97%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-2.629e+00	0.2685	381.0	8.33%	1623.8	7.74%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.601e+00	0.2735	969.0	21.18%	4260.7	20.31%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-2.589e+00	0.2740	3564.0	77.88%	16152.7	76.98%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-2.440e+00	0.3154	44.0	0.96%	163.0	0.78%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-2.437e+00	0.3154	1167.0	25.50%	5167.8	24.63%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-2.409e+00	0.3191	78.0	1.70%	305.1	1.45%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.358e+00	0.3328	1156.0	25.26%	5123.1	24.42%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-2.322e+00	0.3420	90.0	1.97%	358.3	1.71%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.264e+00	0.3590	112.0	2.45%	454.1	2.16%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.193e+00	0.3820	31.0	0.68%	112.9	0.54%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.159e+00	0.3918	36.0	0.79%	133.8	0.64%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-2.117e+00	0.4052	707.0	15.45%	3110.0	14.82%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.099e+00	0.4088	114.0	2.49%	467.8	2.23%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.074e+00	0.4157	112.0	2.45%	459.6	2.19%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.066e+00	0.4157	18.0	0.39%	61.5	0.29%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.963e+00	0.4565	718.0	15.69%	3170.1	15.11%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.954e+00	0.4572	891.0	19.47%	3953.3	18.84%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.933e+00	0.4627	186.0	4.06%	788.3	3.76%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.926e+00	0.4627	39.0	0.85%	150.0	0.71%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.882e+00	0.4789	111.0	2.43%	460.5	2.19%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.843e+00	0.4943	402.0	8.78%	1755.6	8.37%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.683e+00	0.5752	121.0	2.64%	510.2	2.43%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.601e+00	0.6196	18.0	0.39%	66.5	0.32%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.588e+00	0.6228	144.0	3.15%	615.3	2.93%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.575e+00	0.6256	444.0	9.70%	1960.1	9.34%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.571e+00	0.6256	1110.0	24.26%	4980.7	23.74%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.526e+00	0.6472	1584.0	34.62%	7146.5	34.06%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.511e+00	0.6521	186.0	4.06%	805.9	3.84%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.452e+00	0.6866	55.0	1.20%	227.7	1.09%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.444e+00	0.6866	456.0	9.97%	2023.3	9.64%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.408e+00	0.7063	949.0	20.74%	4263.5	20.32%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.378e+00	0.7230	36.0	0.79%	146.7	0.70%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.372e+00	0.7230	143.0	3.12%	619.9	2.95%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.364e+00	0.7230	98.0	2.14%	419.2	2.00%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.351e+00	0.7262	175.0	3.82%	763.5	3.64%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.336e+00	0.7316	428.0	9.35%	1904.9	9.08%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.327e+00	0.7330	156.0	3.41%	679.8	3.24%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-1.314e+00	0.7376	38.0	0.83%	156.7	0.75%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.309e+00	0.7376	4576.0	100.00%	20976.7	99.97%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.282e+00	0.7510	217.0	4.74%	955.2	4.55%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.275e+00	0.7510	573.0	12.52%	2566.7	12.23%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.229e+00	0.7808	92.0	2.01%	397.7	1.90%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.212e+00	0.7885	2.0	0.04%	5.2	0.02%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.152e+00	0.8316	4.0	0.09%	14.0	0.07%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.144e+00	0.8331	79.0	1.73%	342.8	1.63%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.123e+00	0.8448	267.0	5.83%	1190.3	5.67%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.117e+00	0.8448	909.0	19.86%	4111.5	19.60%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.098e+00	0.8547	15.0	0.33%	60.9	0.29%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.075e+00	0.8689	622.0	13.59%	2807.6	13.38%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.068e+00	0.8689	128.0	2.80%	565.3	2.69%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.062e+00	0.8692	19.0	0.42%	78.4	0.37%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.043e+00	0.8795	919.0	20.08%	4165.8	19.85%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.006e+00	0.9072	8.0	0.17%	31.9	0.15%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-9.836e-01	0.9218	392.0	8.57%	1768.4	8.43%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-9.760e-01	0.9230	40.0	0.87%	173.6	0.83%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-9.393e-01	0.9514	42.0	0.92%	183.1	0.87%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-9.291e-01	0.9552	4571.0	99.89%	20953.7	99.86%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.217e-01	0.9563	249.0	5.44%	1122.3	5.35%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-9.048e-01	0.9666	369.0	8.06%	1670.9	7.96%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-9.008e-01	0.9666	133.0	2.91%	596.3	2.84%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.781e-01	0.9807	272.0	5.94%	1230.6	5.87%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-8.599e-01	0.9926	1573.0	34.38%	7182.6	34.23%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-8.595e-01	0.9926	47.0	1.03%	208.7	0.99%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-8.571e-01	0.9926	43.0	0.94%	190.5	0.91%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-8.155e-01	1.0000	346.0	7.56%	1573.1	7.50%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.540e-01	1.0000	120.0	2.62%	545.1	2.60%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-7.496e-01	1.0000	815.0	17.81%	3727.4	17.76%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.362e-01	1.0000	99.0	2.16%	450.4	2.15%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-7.150e-01	1.0000	52.0	1.14%	236.2	1.13%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-7.057e-01	1.0000	41.0	0.90%	186.9	0.89%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-6.965e-01	1.0000	49.0	1.07%	223.4	1.06%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-6.959e-01	1.0000	215.0	4.70%	984.2	4.69%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.943e-01	1.0000	302.0	6.60%	1383.4	6.59%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.725e-01	1.0000	71.0	1.55%	325.4	1.55%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-6.666e-01	1.0000	199.0	4.35%	913.0	4.35%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-6.543e-01	1.0000	4576.0	100.00%	20979.7	99.99%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-6.430e-01	1.0000	654.0	14.29%	3004.6	14.32%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.390e-01	1.0000	394.0	8.61%	1811.4	8.63%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.233e-01	1.0000	133.0	2.91%	613.9	2.93%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.102e-01	1.0000	506.0	11.06%	2329.1	11.10%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-6.012e-01	1.0000	19.0	0.42%	88.8	0.42%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-5.787e-01	1.0000	236.0	5.16%	1091.3	5.20%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-5.678e-01	1.0000	413.0	9.03%	1907.8	9.09%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.620e-01	1.0000	13.0	0.28%	61.5	0.29%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-5.423e-01	1.0000	68.0	1.49%	318.4	1.52%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-5.405e-01	1.0000	194.0	4.24%	901.3	4.30%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-5.312e-01	1.0000	443.0	9.68%	2050.3	9.77%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-5.142e-01	1.0000	84.0	1.84%	394.4	1.88%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-5.141e-01	1.0000	581.0	12.70%	2688.1	12.81%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-5.104e-01	1.0000	140.0	3.06%	654.8	3.12%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.026e-01	1.0000	535.0	11.69%	2478.8	11.81%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-4.780e-01	1.0000	680.0	14.86%	3150.3	15.01%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-4.762e-01	1.0000	123.0	2.69%	578.8	2.76%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-4.731e-01	1.0000	149.0	3.26%	699.4	3.33%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.704e-01	1.0000	10.0	0.22%	49.3	0.23%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.645e-01	1.0000	94.0	2.05%	444.8	2.12%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-4.578e-01	1.0000	153.0	3.34%	719.3	3.43%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-4.557e-01	1.0000	4.0	0.09%	20.7	0.10%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-4.224e-01	1.0000	431.0	9.42%	2011.2	9.59%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-3.852e-01	1.0000	402.0	8.78%	1883.1	8.97%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.760e-01	1.0000	346.0	7.56%	1625.4	7.75%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.757e-01	1.0000	1109.0	24.24%	5148.7	24.54%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.752e-01	1.0000	41.0	0.90%	201.3	0.96%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-3.486e-01	1.0000	126.0	2.75%	604.9	2.88%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-3.285e-01	1.0000	74.0	1.62%	361.8	1.72%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-3.157e-01	1.0000	4569.0	99.85%	20954.7	99.87%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.090e-01	1.0000	342.0	7.47%	1618.7	7.71%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.962e-01	1.0000	631.0	13.79%	2962.9	14.12%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.901e-01	1.0000	983.0	21.48%	4591.2	21.88%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.760e-01	1.0000	799.0	17.46%	3745.0	17.85%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.736e-01	1.0000	1025.0	22.40%	4790.5	22.83%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.729e-01	1.0000	351.0	7.67%	1667.4	7.95%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.604e-01	1.0000	167.0	3.65%	808.7	3.85%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.511e-01	1.0000	232.0	5.07%	1115.2	5.32%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.461e-01	1.0000	1801.0	39.36%	8374.0	39.91%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.455e-01	1.0000	3.0	0.07%	19.4	0.09%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.442e-01	1.0000	19.0	0.42%	102.7	0.49%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.396e-01	1.0000	287.0	6.27%	1375.7	6.56%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.309e-01	1.0000	87.0	1.90%	433.3	2.07%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.305e-01	1.0000	235.0	5.14%	1133.6	5.40%
 Ik-1	NHTTGGGAATRCC	1e0	-2.181e-01	1.0000	4576.0	100.00%	20982.5	100.00%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.115e-01	1.0000	1565.0	34.20%	7303.7	34.81%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-2.091e-01	1.0000	16.0	0.35%	89.2	0.42%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-2.039e-01	1.0000	1876.0	41.00%	8737.3	41.64%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.858e-01	1.0000	163.0	3.56%	802.1	3.82%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.803e-01	1.0000	699.0	15.28%	3313.2	15.79%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.706e-01	1.0000	120.0	2.62%	600.7	2.86%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.702e-01	1.0000	571.0	12.48%	2721.1	12.97%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.699e-01	1.0000	106.0	2.32%	533.6	2.54%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.666e-01	1.0000	1801.0	39.36%	8411.8	40.09%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.638e-01	1.0000	55.0	1.20%	287.5	1.37%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.507e-01	1.0000	21.0	0.46%	119.0	0.57%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.458e-01	1.0000	253.0	5.53%	1238.1	5.90%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.395e-01	1.0000	746.0	16.30%	3549.8	16.92%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.267e-01	1.0000	6.0	0.13%	41.9	0.20%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.144e-01	1.0000	94.0	2.05%	486.6	2.32%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.139e-01	1.0000	67.0	1.46%	354.9	1.69%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.129e-01	1.0000	184.0	4.02%	920.7	4.39%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.109e-01	1.0000	20.0	0.44%	118.4	0.56%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-9.509e-02	1.0000	444.0	9.70%	2159.4	10.29%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-9.273e-02	1.0000	35.0	0.76%	198.8	0.95%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.209e-02	1.0000	660.0	14.42%	3188.8	15.20%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-6.877e-02	1.0000	826.0	18.05%	3967.4	18.91%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-6.874e-02	1.0000	2203.0	48.14%	10332.1	49.24%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.020e-02	1.0000	407.0	8.89%	2006.4	9.56%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-6.019e-02	1.0000	823.0	17.99%	3961.4	18.88%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-5.534e-02	1.0000	1679.0	36.69%	7938.8	37.84%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-5.519e-02	1.0000	418.0	9.13%	2062.2	9.83%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.670e-02	1.0000	79.0	1.73%	433.1	2.06%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.314e-02	1.0000	262.0	5.73%	1328.2	6.33%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-4.186e-02	1.0000	469.0	10.25%	2316.6	11.04%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-3.871e-02	1.0000	395.0	8.63%	1968.7	9.38%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.691e-02	1.0000	539.0	11.78%	2653.1	12.64%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.523e-02	1.0000	44.0	0.96%	260.2	1.24%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.244e-02	1.0000	190.0	4.15%	989.8	4.72%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.954e-02	1.0000	148.0	3.23%	786.2	3.75%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.681e-02	1.0000	117.0	2.56%	635.3	3.03%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.640e-02	1.0000	1425.0	31.14%	6813.1	32.47%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.391e-02	1.0000	457.0	9.99%	2283.9	10.88%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.354e-02	1.0000	294.0	6.42%	1503.7	7.17%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-2.080e-02	1.0000	4575.0	99.98%	20982.5	100.00%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.708e-02	1.0000	1862.0	40.69%	8860.5	42.23%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.499e-02	1.0000	748.0	16.35%	3682.0	17.55%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.297e-02	1.0000	803.0	17.55%	3948.8	18.82%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.045e-02	1.0000	1249.0	27.29%	6048.3	28.83%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.020e-02	1.0000	397.0	8.68%	2028.2	9.67%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-9.996e-03	1.0000	193.0	4.22%	1036.9	4.94%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-9.504e-03	1.0000	641.0	14.01%	3196.4	15.23%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-8.727e-03	1.0000	655.0	14.31%	3267.0	15.57%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-8.557e-03	1.0000	158.0	3.45%	866.7	4.13%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-8.455e-03	1.0000	858.0	18.75%	4227.8	20.15%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.603e-03	1.0000	440.0	9.62%	2251.0	10.73%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.398e-03	1.0000	7.0	0.15%	70.6	0.34%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.897e-03	1.0000	651.0	14.23%	3263.0	15.55%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-3.904e-03	1.0000	229.0	5.00%	1238.6	5.90%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.874e-03	1.0000	250.0	5.46%	1342.9	6.40%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-3.681e-03	1.0000	600.0	13.11%	3038.4	14.48%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.586e-03	1.0000	198.0	4.33%	1087.0	5.18%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.479e-03	1.0000	988.0	21.59%	4879.9	23.26%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.342e-03	1.0000	714.0	15.60%	3585.2	17.09%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.821e-03	1.0000	1066.0	23.30%	5255.7	25.05%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.710e-03	1.0000	473.0	10.34%	2439.4	11.63%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.121e-03	1.0000	303.0	6.62%	1619.4	7.72%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.114e-03	1.0000	436.0	9.53%	2268.9	10.81%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-2.030e-03	1.0000	731.0	15.97%	3685.1	17.56%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.800e-03	1.0000	1377.0	30.09%	6731.6	32.08%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.625e-03	1.0000	4.0	0.09%	57.9	0.28%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.472e-03	1.0000	86.0	1.88%	531.2	2.53%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.447e-03	1.0000	447.0	9.77%	2333.5	11.12%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.385e-03	1.0000	1294.0	28.28%	6355.2	30.29%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-1.288e-03	1.0000	585.0	12.78%	3003.4	14.31%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.121e-03	1.0000	1629.0	35.60%	7925.4	37.77%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-9.600e-04	1.0000	780.0	17.05%	3946.7	18.81%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-8.960e-04	1.0000	235.0	5.14%	1303.3	6.21%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-7.790e-04	1.0000	54.0	1.18%	367.2	1.75%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-6.670e-04	1.0000	1471.0	32.15%	7213.1	34.38%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-6.450e-04	1.0000	1189.0	25.98%	5895.9	28.10%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-4.840e-04	1.0000	698.0	15.25%	3578.7	17.06%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-3.770e-04	1.0000	906.0	19.80%	4579.4	21.82%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-3.580e-04	1.0000	33.0	0.72%	256.6	1.22%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.510e-04	1.0000	544.0	11.89%	2846.4	13.57%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.510e-04	1.0000	1981.0	43.29%	9618.8	45.84%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.880e-04	1.0000	174.0	3.80%	1025.3	4.89%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.850e-04	1.0000	92.0	2.01%	594.3	2.83%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.500e-05	1.0000	203.0	4.44%	1194.2	5.69%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-5.400e-05	1.0000	983.0	21.48%	5011.2	23.88%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-4.200e-05	1.0000	292.0	6.38%	1656.2	7.89%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-3.800e-05	1.0000	2292.0	50.09%	11120.2	53.00%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.600e-05	1.0000	68.0	1.49%	484.0	2.31%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-3.500e-05	1.0000	1183.0	25.85%	5974.6	28.47%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.700e-05	1.0000	1465.0	32.01%	7308.6	34.83%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.500e-05	1.0000	1710.0	37.37%	8453.1	40.29%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.300e-05	1.0000	1054.0	23.03%	5376.7	25.62%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.400e-05	1.0000	3697.0	80.79%	17444.1	83.14%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-8.000e-06	1.0000	2117.0	46.26%	10373.7	49.44%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.000e-06	1.0000	1827.0	39.93%	9038.6	43.08%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-5.000e-06	1.0000	332.0	7.26%	1903.6	9.07%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-4.000e-06	1.0000	628.0	13.72%	3376.6	16.09%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.000e-06	1.0000	729.0	15.93%	3914.0	18.65%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-0.000e+00	1.0000	698.0	15.25%	3772.6	17.98%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-0.000e+00	1.0000	1870.0	40.87%	9332.2	44.48%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-0.000e+00	1.0000	155.0	3.39%	1025.7	4.89%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	2152.0	47.03%	10640.6	50.71%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-0.000e+00	1.0000	1083.0	23.67%	5659.2	26.97%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-0.000e+00	1.0000	307.0	6.71%	1843.3	8.78%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-0.000e+00	1.0000	1589.0	34.72%	8073.9	38.48%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-0.000e+00	1.0000	894.0	19.54%	4785.9	22.81%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-0.000e+00	1.0000	1434.0	31.34%	7364.4	35.10%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-0.000e+00	1.0000	1309.0	28.61%	6787.9	32.35%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-0.000e+00	1.0000	1622.0	35.45%	8265.9	39.39%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-0.000e+00	1.0000	1753.0	38.31%	8893.8	42.39%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-0.000e+00	1.0000	1058.0	23.12%	5609.4	26.73%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	1353.0	29.57%	7017.9	33.45%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-0.000e+00	1.0000	1002.0	21.90%	5350.8	25.50%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-0.000e+00	1.0000	76.0	1.66%	627.8	2.99%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-0.000e+00	1.0000	866.0	18.92%	4711.8	22.46%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-0.000e+00	1.0000	2026.0	44.27%	10224.0	48.73%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-0.000e+00	1.0000	542.0	11.84%	3139.7	14.96%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-0.000e+00	1.0000	1834.0	40.08%	9356.0	44.59%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-0.000e+00	1.0000	3094.0	67.61%	15067.3	71.81%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-0.000e+00	1.0000	1539.0	33.63%	8011.6	38.18%
Tal1	CATCTG	1e0	-0.000e+00	1.0000	884.0	19.32%	4876.7	23.24%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-0.000e+00	1.0000	1788.0	39.07%	9181.4	43.76%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-0.000e+00	1.0000	1736.0	37.94%	8941.2	42.61%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-0.000e+00	1.0000	468.0	10.23%	2802.1	13.35%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	2163.0	47.27%	10930.8	52.09%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-0.000e+00	1.0000	3909.0	85.42%	18593.6	88.61%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	2092.0	45.72%	10615.8	50.59%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	1190.0	26.01%	6416.5	30.58%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-0.000e+00	1.0000	1498.0	32.74%	7895.9	37.63%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-0.000e+00	1.0000	802.0	17.53%	4543.0	21.65%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-0.000e+00	1.0000	2336.0	51.05%	11812.2	56.30%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-0.000e+00	1.0000	1356.0	29.63%	7260.0	34.60%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-0.000e+00	1.0000	1477.0	32.28%	7846.0	37.39%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-0.000e+00	1.0000	1822.0	39.82%	9506.5	45.31%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	1017.0	22.22%	5679.0	27.07%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-0.000e+00	1.0000	2879.0	62.92%	14354.9	68.41%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-0.000e+00	1.0000	715.0	15.62%	4238.4	20.20%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-0.000e+00	1.0000	2363.0	51.64%	12073.5	57.54%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-0.000e+00	1.0000	256.0	5.59%	1835.3	8.75%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-0.000e+00	1.0000	520.0	11.36%	3262.8	15.55%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	2047.0	44.73%	10665.6	50.83%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-0.000e+00	1.0000	1449.0	31.67%	7857.5	37.45%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	0.000e+00	1.0000	921.0	20.13%	5820.4	27.74%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	2519.0	55.05%	12812.3	61.06%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	2215.0	48.40%	11510.1	54.86%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	0.000e+00	1.0000	1180.0	25.79%	6854.7	32.67%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	0.000e+00	1.0000	2533.0	55.35%	12932.1	61.63%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	0.000e+00	1.0000	3486.0	76.18%	18296.7	87.20%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	0.000e+00	1.0000	3473.0	75.90%	17788.1	84.78%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	3351.0	73.23%	18095.7	86.24%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	2.2	0.01%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	0.000e+00	1.0000	2140.0	46.77%	12058.6	57.47%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	0.000e+00	1.0000	2429.0	53.08%	12600.3	60.05%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	0.000e+00	1.0000	2524.0	55.16%	12962.4	61.78%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	0.6	0.00%
SeqBias: CA-repeat	CACACACACA	1e0	0.000e+00	1.0000	3341.0	73.01%	16901.2	80.55%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	0.000e+00	1.0000	4506.0	98.47%	20942.7	99.81%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	0.000e+00	1.0000	2306.0	50.39%	11923.8	56.83%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	0.000e+00	1.0000	1859.0	40.62%	9863.5	47.01%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	0.000e+00	1.0000	1059.0	23.14%	6134.6	29.24%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	0.000e+00	1.0000	2107.0	46.04%	11215.6	53.45%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	0.000e+00	1.0000	2009.0	43.90%	10546.0	50.26%