Information for 3-CGCGCCGY (Motif 3)


Reverse Opposite:

p-value:1e-75
log p-value:-1.727e+02
Information Content per bp:1.558
Number of Target Sequences with motif1673.0
Percentage of Target Sequences with motif36.56%
Number of Background Sequences with motif5108.7
Percentage of Background Sequences with motif24.35%
Average Position of motif in Targets420.6 +/- 320.4bp
Average Position of motif in Background281.3 +/- 234.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RSC3/MA0374.1/Jaspar

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CGCGCCGY
CGCGCGG-

RSC30/MA0375.1/Jaspar

Match Rank:2
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--CGCGCCGY
CGCGCGCG--

MBP1/MA0329.1/Jaspar

Match Rank:3
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--CGCGCCGY
NNCGCGT---

SWI6(MacIsaac)/Yeast

Match Rank:4
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CGCGCCGY
CGCGTC--

DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer

Match Rank:5
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---CGCGCCGY
TAGCGCGC---

ERF109/MA1053.1/Jaspar

Match Rank:6
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CGCGCCGY-
-GCGCCGCC

RAP2-10/MA0980.1/Jaspar

Match Rank:7
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CGCGCCGY-
-GCGCCGCC

POL006.1_BREu/Jaspar

Match Rank:8
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CGCGCCGY
AGCGCGCC--

RAP2-3/MA1051.1/Jaspar

Match Rank:9
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CGCGCCGY-
-GCGCCGCC

PB0008.1_E2F2_1/Jaspar

Match Rank:10
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----CGCGCCGY---
NTCGCGCGCCTTNNN