Information for 18-TCTCDCTC (Motif 13)


Reverse Opposite:

p-value:1e-16
log p-value:-3.911e+01
Information Content per bp:1.660
Number of Target Sequences with motif367.0
Percentage of Target Sequences with motif8.02%
Number of Background Sequences with motif1058.8
Percentage of Background Sequences with motif5.05%
Average Position of motif in Targets447.5 +/- 336.8bp
Average Position of motif in Background270.5 +/- 194.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:1
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-TCTCDCTC-
CTCTCTCTCY

Trl/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--TCTCDCTC
TTGCTCTCTC

Trl/MA0205.1/Jaspar

Match Rank:3
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--TCTCDCTC
TTGCTCTCTC

SeqBias: GA-repeat

Match Rank:4
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:TCTCDCTC--
TCTCTCTCTC

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:5
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:TCTCDCTC-
-CTCTCTCY

Trl/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----TCTCDCTC-
TTNCTCTCTCTCT

Trl/dmmpmm(Down)/fly

Match Rank:7
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----TCTCDCTC
GCTCTCTCTCTC

z/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TCTCDCTC--
ANTCACTCAA

z/MA0255.1/Jaspar

Match Rank:9
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TCTCDCTC--
ANTCACTCAA

z/dmmpmm(Down)/fly

Match Rank:10
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:TCTCDCTC-
---CACTCA