Information for 7-CGTATATA (Motif 5)


Reverse Opposite:

p-value:1e-44
log p-value:-1.026e+02
Information Content per bp:1.620
Number of Target Sequences with motif1552.0
Percentage of Target Sequences with motif36.20%
Number of Background Sequences with motif5693.3
Percentage of Background Sequences with motif26.40%
Average Position of motif in Targets366.4 +/- 308.3bp
Average Position of motif in Background275.3 +/- 195.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-box/SacCer-Promoters/Homer

Match Rank:1
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:CGTATATA----
--TATATAWDVV

MOT2/MA0379.1/Jaspar

Match Rank:2
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:CGTATATA
--TATAT-

Cf2/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CGTATATA--
-GTATATATA

Cf2/MA0015.1/Jaspar

Match Rank:4
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CGTATATA---
-GTATATATAC

PB0163.1_Six6_2/Jaspar

Match Rank:5
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---CGTATATA------
ANNNGGATATATCCNNN

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CGTATATA--------
-GTATAAAAGGCGGGG

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CGTATATA--------
-GTATAAAAGGCGGGG

bin/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CGTATATA
-ATAAATA

TBP(- other)/several species/AthaMap

Match Rank:9
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CGTATATA----
ACTATAAATACC

NHP6A/MA0345.1/Jaspar

Match Rank:10
Score:0.75
Offset:-6
Orientation:forward strand
Alignment:------CGTATATA-------
ATGACCTATATATAAAAATGA