Information for 21-CCACTCGG (Motif 12)


Reverse Opposite:

p-value:1e-18
log p-value:-4.209e+01
Information Content per bp:1.530
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif129.0
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets373.7 +/- 253.0bp
Average Position of motif in Background265.5 +/- 202.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CCACTCGG
MRSCACTYAA

PB0114.1_Egr1_2/Jaspar

Match Rank:2
Score:0.74
Offset:-6
Orientation:reverse strand
Alignment:------CCACTCGG--
NNAGTCCCACTCNNNN

BHLH112/MA0961.1/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CCACTCGG
GCCACTTGC

tin/MA0247.2/Jaspar

Match Rank:4
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CCACTCGG--
CCACTTGANA

z/dmmpmm(Down)/fly

Match Rank:5
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CCACTCGG
-CACTCA-

z/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CCACTCGG
-CACTCA-

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCACTCGG
AGCCAATCGG

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCACTCGG-
NSCACTYVAV

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCACTCGG
AASCACTCAA

CMTA3/MA0970.1/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCACTCGG
NNNACGCGG