Information for 20-CGCCTTAA (Motif 11)


Reverse Opposite:

p-value:1e-21
log p-value:-4.867e+01
Information Content per bp:1.927
Number of Target Sequences with motif210.0
Percentage of Target Sequences with motif4.90%
Number of Background Sequences with motif510.2
Percentage of Background Sequences with motif2.37%
Average Position of motif in Targets398.0 +/- 327.2bp
Average Position of motif in Background282.0 +/- 192.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RPH1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CGCCTTAA--
CCCCTTAAGG

RPH1(MacIsaac)/Yeast

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CGCCTTAA--
CCCCTTAAGG

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.71
Offset:-7
Orientation:reverse strand
Alignment:-------CGCCTTAA
NNGGCCACGCCTTTN

PROX1/MA0794.1/Jaspar

Match Rank:4
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CGCCTTAA
CAAGACGCCTTA-

MSN4(MacIsaac)/Yeast

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CGCCTTAA
CCCCCTT--

RPH1/MA0372.1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CGCCTTAA
ACCCCTAA-

YY2/MA0748.1/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGCCTTAA
GTCCGCCATTA

PB0008.1_E2F2_1/Jaspar

Match Rank:8
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------CGCCTTAA-
NTCGCGCGCCTTNNN

MSN4/Literature(Harbison)/Yeast

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CGCCTTAA
NCCCCTG--

GIS1/MA0306.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGCCTTAA
ACCCCTAAA