Information for 5-CGTATATA (Motif 5)


Reverse Opposite:

p-value:1e-47
log p-value:-1.096e+02
Information Content per bp:1.624
Number of Target Sequences with motif1498.0
Percentage of Target Sequences with motif34.81%
Number of Background Sequences with motif5031.9
Percentage of Background Sequences with motif24.85%
Average Position of motif in Targets419.2 +/- 393.7bp
Average Position of motif in Background296.6 +/- 219.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.41
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-box/SacCer-Promoters/Homer

Match Rank:1
Score:0.88
Offset:2
Orientation:reverse strand
Alignment:CGTATATA----
--TATATAWDVV

MOT2/MA0379.1/Jaspar

Match Rank:2
Score:0.84
Offset:3
Orientation:forward strand
Alignment:CGTATATA
---ATATA

Cf2/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.83
Offset:1
Orientation:forward strand
Alignment:CGTATATA--
-GTATATATA

Cf2/MA0015.1/Jaspar

Match Rank:4
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CGTATATA---
-GTATATATAC

PB0163.1_Six6_2/Jaspar

Match Rank:5
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---CGTATATA------
ANNNGGATATATCCNNN

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CGTATATA--------
-GTATAAAAGGCGGGG

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CGTATATA--------
-GTATAAAAGGCGGGG

bin/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CGTATATA
-ATAAATA

NHP6A/MA0345.1/Jaspar

Match Rank:9
Score:0.75
Offset:-6
Orientation:forward strand
Alignment:------CGTATATA-------
ATGACCTATATATAAAAATGA

TBP(- other)/several species/AthaMap

Match Rank:10
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CGTATATA----
ACTATAAATACC