Information for 14-AGAGTGAG (Motif 11)


Reverse Opposite:

p-value:1e-26
log p-value:-6.021e+01
Information Content per bp:1.791
Number of Target Sequences with motif781.0
Percentage of Target Sequences with motif18.15%
Number of Background Sequences with motif2523.2
Percentage of Background Sequences with motif12.46%
Average Position of motif in Targets439.3 +/- 346.8bp
Average Position of motif in Background304.3 +/- 212.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:1
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTGAG
RGAGAGAGAG

SeqBias: GA-repeat

Match Rank:2
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGAG-
GAGAGAGAGA

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:3
Score:0.77
Offset:0
Orientation:forward strand
Alignment:AGAGTGAG
RGAGAGAG

Trl/dmmpmm(Bigfoot)/fly

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AGAGTGAG-----
AGAGAGAGAGNAA

Trl/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AGAGTGAG---
-GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:AGAGTGAG---
-GAGAGAGCAA

Trl/dmmpmm(Down)/fly

Match Rank:7
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGAG---
GAGAGAGAGAGC

z/dmmpmm(Down)/fly

Match Rank:8
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AGAGTGAG
TGAGTG--

z/dmmpmm(Pollard)/fly

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGAG-
TTGAGTGATT

z/MA0255.1/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGAG-
TTGAGTGATT