Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 4215)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 20901)	% of Background Sequences with Motif
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-227	-5.229e+02	0.0000	1484.0	35.21%	3153.9	15.09%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-174	-4.017e+02	0.0000	921.0	21.85%	1646.3	7.88%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-76	-1.761e+02	0.0000	1986.0	47.12%	6954.6	33.28%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-59	-1.378e+02	0.0000	580.0	13.76%	1387.0	6.64%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-48	-1.117e+02	0.0000	646.0	15.33%	1753.6	8.39%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-46	-1.077e+02	0.0000	428.0	10.15%	991.6	4.74%
SeqBias: CG-repeat	CGCGCGCGCG	1e-46	-1.060e+02	0.0000	762.0	18.08%	2231.7	10.68%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-43	-1.000e+02	0.0000	406.0	9.63%	948.8	4.54%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-42	-9.746e+01	0.0000	638.0	15.14%	1804.3	8.63%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-40	-9.306e+01	0.0000	547.0	12.98%	1486.6	7.11%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-39	-9.004e+01	0.0000	1045.0	24.79%	3509.3	16.79%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-35	-8.160e+01	0.0000	467.0	11.08%	1253.1	6.00%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-32	-7.499e+01	0.0000	373.0	8.85%	947.2	4.53%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-29	-6.891e+01	0.0000	506.0	12.00%	1476.9	7.07%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-29	-6.803e+01	0.0000	418.0	9.92%	1148.4	5.50%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-29	-6.705e+01	0.0000	566.0	13.43%	1723.7	8.25%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-28	-6.646e+01	0.0000	813.0	19.29%	2738.0	13.10%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-25	-5.955e+01	0.0000	147.0	3.49%	265.0	1.27%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-23	-5.492e+01	0.0000	827.0	19.62%	2908.7	13.92%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-22	-5.265e+01	0.0000	130.0	3.08%	234.2	1.12%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-22	-5.226e+01	0.0000	913.0	21.66%	3309.2	15.83%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-22	-5.220e+01	0.0000	333.0	7.90%	925.3	4.43%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-21	-5.020e+01	0.0000	1271.0	30.15%	4936.7	23.62%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-21	-4.873e+01	0.0000	412.0	9.77%	1250.7	5.98%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-20	-4.756e+01	0.0000	1045.0	24.79%	3949.9	18.90%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-20	-4.723e+01	0.0000	1840.0	43.65%	7648.8	36.60%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-17	-3.983e+01	0.0000	545.0	12.93%	1866.1	8.93%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-16	-3.859e+01	0.0000	760.0	18.03%	2801.3	13.40%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-14	-3.449e+01	0.0000	463.0	10.98%	1577.5	7.55%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-13	-3.154e+01	0.0000	1322.0	31.36%	5462.6	26.14%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-13	-3.080e+01	0.0000	239.0	5.67%	708.5	3.39%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-13	-3.030e+01	0.0000	135.0	3.20%	330.9	1.58%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-12	-2.981e+01	0.0000	1008.0	23.91%	4038.6	19.32%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-12	-2.902e+01	0.0000	159.0	3.77%	421.6	2.02%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-12	-2.883e+01	0.0000	281.0	6.67%	887.7	4.25%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-12	-2.807e+01	0.0000	2869.0	68.07%	13130.3	62.83%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-12	-2.769e+01	0.0000	325.0	7.71%	1074.2	5.14%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-12	-2.766e+01	0.0000	497.0	11.79%	1795.1	8.59%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-10	-2.384e+01	0.0000	297.0	7.05%	996.6	4.77%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-9	-2.287e+01	0.0000	151.0	3.58%	428.6	2.05%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-8	-2.071e+01	0.0000	109.0	2.59%	287.6	1.38%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-7	-1.834e+01	0.0000	706.0	16.75%	2861.1	13.69%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-7	-1.802e+01	0.0000	130.0	3.08%	381.9	1.83%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-7	-1.747e+01	0.0000	57.0	1.35%	124.5	0.60%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-7	-1.733e+01	0.0000	280.0	6.64%	994.6	4.76%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-7	-1.664e+01	0.0000	99.0	2.35%	274.7	1.31%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-7	-1.634e+01	0.0000	566.0	13.43%	2263.1	10.83%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-6	-1.574e+01	0.0000	41.0	0.97%	80.4	0.38%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-6	-1.493e+01	0.0000	680.0	16.13%	2809.6	13.44%
SeqBias: TA-repeat	TATATATATA	1e-6	-1.452e+01	0.0000	3678.0	87.26%	17678.6	84.59%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-5	-1.368e+01	0.0000	190.0	4.51%	658.9	3.15%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-5	-1.352e+01	0.0000	1341.0	31.81%	5957.8	28.51%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-5	-1.241e+01	0.0000	125.0	2.97%	405.6	1.94%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-5	-1.164e+01	0.0001	435.0	10.32%	1759.6	8.42%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-5	-1.158e+01	0.0001	1517.0	35.99%	6867.1	32.86%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-4	-1.050e+01	0.0002	196.0	4.65%	721.2	3.45%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-4	-1.006e+01	0.0003	203.0	4.82%	757.4	3.62%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-4	-9.710e+00	0.0004	590.0	14.00%	2512.7	12.02%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-4	-9.308e+00	0.0006	201.0	4.77%	759.5	3.63%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-4	-9.287e+00	0.0006	188.0	4.46%	703.8	3.37%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-3	-8.688e+00	0.0011	124.0	2.94%	438.6	2.10%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-3	-8.374e+00	0.0014	66.0	1.57%	205.2	0.98%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-3	-8.374e+00	0.0014	66.0	1.57%	205.2	0.98%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-3	-8.152e+00	0.0017	192.0	4.56%	737.2	3.53%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e-3	-8.043e+00	0.0019	42.0	1.00%	116.7	0.56%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-3	-8.021e+00	0.0019	678.0	16.09%	2970.9	14.22%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-3	-7.900e+00	0.0021	95.0	2.25%	326.4	1.56%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-3	-7.824e+00	0.0023	482.0	11.44%	2059.4	9.85%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-3	-7.333e+00	0.0037	778.0	18.46%	3465.6	16.58%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-3	-6.921e+00	0.0055	42.0	1.00%	123.7	0.59%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-2	-6.608e+00	0.0074	945.0	22.42%	4289.4	20.52%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-2	-6.432e+00	0.0086	480.0	11.39%	2088.3	9.99%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-6.398e+00	0.0088	515.0	12.22%	2254.0	10.79%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-6.238e+00	0.0102	52.0	1.23%	167.2	0.80%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-2	-6.051e+00	0.0122	368.0	8.73%	1577.1	7.55%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-2	-6.018e+00	0.0124	75.0	1.78%	263.1	1.26%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-5.967e+00	0.0129	34.0	0.81%	99.3	0.48%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-5.532e+00	0.0196	313.0	7.43%	1336.1	6.39%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-5.195e+00	0.0272	191.0	4.53%	785.9	3.76%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2	-5.192e+00	0.0272	38.0	0.90%	120.5	0.58%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-5.172e+00	0.0272	148.0	3.51%	592.3	2.83%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-2	-5.096e+00	0.0289	99.0	2.35%	377.5	1.81%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-2	-4.886e+00	0.0352	81.0	1.92%	302.2	1.45%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-4.863e+00	0.0356	73.0	1.73%	268.5	1.28%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-2	-4.705e+00	0.0412	39.0	0.93%	128.2	0.61%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-4.474e+00	0.0513	188.0	4.46%	788.0	3.77%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-4.411e+00	0.0540	127.0	3.01%	512.0	2.45%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-4.251e+00	0.0626	518.0	12.29%	2341.9	11.21%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-4.144e+00	0.0689	724.0	17.18%	3332.4	15.95%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-4.141e+00	0.0689	45.0	1.07%	158.1	0.76%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-3.913e+00	0.0850	530.0	12.57%	2412.9	11.55%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.793e+00	0.0947	216.0	5.12%	933.3	4.47%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-3.708e+00	0.1020	449.0	10.65%	2034.2	9.73%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-3.650e+00	0.1070	701.0	16.63%	3245.8	15.53%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-3.580e+00	0.1136	78.0	1.85%	308.8	1.48%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-3.466e+00	0.1260	1213.0	28.78%	5743.6	27.48%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.241e+00	0.1561	63.0	1.49%	247.3	1.18%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-3.233e+00	0.1561	100.0	2.37%	413.5	1.98%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-3.047e+00	0.1857	155.0	3.68%	670.5	3.21%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-1	-3.041e+00	0.1857	471.0	11.17%	2168.3	10.38%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-3.008e+00	0.1893	244.0	5.79%	1088.2	5.21%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.966e+00	0.1955	90.0	2.14%	373.1	1.79%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.946e+00	0.1974	424.0	10.06%	1947.5	9.32%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-1	-2.928e+00	0.1991	1521.0	36.09%	7291.5	34.89%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.927e+00	0.1991	229.0	5.43%	1020.7	4.88%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.889e+00	0.2031	290.0	6.88%	1310.2	6.27%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-2.863e+00	0.2065	44.0	1.04%	169.2	0.81%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.809e+00	0.2159	120.0	2.85%	514.7	2.46%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-2.770e+00	0.2224	128.0	3.04%	552.3	2.64%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.604e+00	0.2601	129.0	3.06%	561.8	2.69%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-2.363e+00	0.3281	41.0	0.97%	163.4	0.78%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.232e+00	0.3707	141.0	3.35%	628.1	3.01%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.223e+00	0.3710	237.0	5.62%	1084.4	5.19%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.113e+00	0.4103	999.0	23.70%	4792.6	22.93%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.087e+00	0.4139	44.0	1.04%	181.8	0.87%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.087e+00	0.4139	44.0	1.04%	181.6	0.87%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-2.039e+00	0.4306	1042.0	24.72%	5009.2	23.97%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.937e+00	0.4725	325.0	7.71%	1520.3	7.27%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.856e+00	0.5081	81.0	1.92%	358.0	1.71%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.856e+00	0.5081	424.0	10.06%	2004.9	9.59%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.828e+00	0.5140	605.0	14.35%	2887.5	13.82%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.775e+00	0.5375	299.0	7.09%	1403.3	6.71%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.753e+00	0.5453	1057.0	25.08%	5108.3	24.44%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.735e+00	0.5507	51.0	1.21%	220.6	1.06%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.614e+00	0.6165	4215.0	100.00%	20890.7	99.96%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.599e+00	0.6205	64.0	1.52%	285.0	1.36%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.554e+00	0.6443	644.0	15.28%	3099.2	14.83%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.543e+00	0.6462	97.0	2.30%	442.7	2.12%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.484e+00	0.6800	72.0	1.71%	325.7	1.56%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.443e+00	0.7029	13.0	0.31%	51.5	0.25%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.434e+00	0.7042	802.0	19.03%	3886.0	18.59%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.420e+00	0.7089	103.0	2.44%	475.9	2.28%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.388e+00	0.7264	99.0	2.35%	457.2	2.19%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.365e+00	0.7379	595.0	14.12%	2875.7	13.76%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.357e+00	0.7379	85.0	2.02%	391.9	1.88%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.350e+00	0.7379	96.0	2.28%	444.7	2.13%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.308e+00	0.7638	1036.0	24.58%	5050.8	24.17%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.306e+00	0.7638	22.0	0.52%	94.9	0.45%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-1.296e+00	0.7638	630.0	14.95%	3053.2	14.61%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.294e+00	0.7638	7.0	0.17%	26.2	0.13%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.275e+00	0.7669	52.0	1.23%	236.8	1.13%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.268e+00	0.7671	27.0	0.64%	118.5	0.57%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.222e+00	0.7970	119.0	2.82%	560.3	2.68%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.206e+00	0.8043	39.0	0.93%	176.2	0.84%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.206e+00	0.8043	13.0	0.31%	54.3	0.26%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.181e+00	0.8134	167.0	3.96%	795.8	3.81%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.178e+00	0.8134	82.0	1.95%	383.1	1.83%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.154e+00	0.8247	15.0	0.36%	64.3	0.31%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.106e+00	0.8595	416.0	9.87%	2019.0	9.66%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.103e+00	0.8595	1.0	0.02%	3.0	0.01%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.080e+00	0.8707	139.0	3.30%	664.4	3.18%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.077e+00	0.8707	1047.0	24.84%	5132.9	24.56%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.067e+00	0.8707	28.0	0.66%	127.3	0.61%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.058e+00	0.8726	124.0	2.94%	593.0	2.84%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.018e+00	0.9021	239.0	5.67%	1157.9	5.54%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-9.831e-01	0.9282	28.0	0.66%	129.9	0.62%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-9.768e-01	0.9282	1216.0	28.85%	5981.9	28.62%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-9.427e-01	0.9542	546.0	12.95%	2676.0	12.80%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-9.266e-01	0.9636	44.0	1.04%	208.4	1.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-9.242e-01	0.9636	31.0	0.74%	145.1	0.69%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-9.197e-01	0.9636	193.0	4.58%	938.7	4.49%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-9.029e-01	0.9684	171.0	4.06%	832.0	3.98%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-8.926e-01	0.9724	204.0	4.84%	994.6	4.76%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-8.622e-01	0.9964	29.0	0.69%	137.3	0.66%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-8.069e-01	1.0000	4215.0	100.00%	20894.6	99.98%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-7.957e-01	1.0000	527.0	12.50%	2598.4	12.43%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-7.519e-01	1.0000	393.0	9.32%	1940.5	9.29%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-7.281e-01	1.0000	558.0	13.24%	2760.6	13.21%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.271e-01	1.0000	14.0	0.33%	67.5	0.32%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-7.098e-01	1.0000	210.0	4.98%	1038.6	4.97%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-6.977e-01	1.0000	142.0	3.37%	702.1	3.36%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-6.927e-01	1.0000	3195.0	75.80%	15838.1	75.79%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-6.778e-01	1.0000	870.0	20.64%	4314.8	20.65%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-6.014e-01	1.0000	393.0	9.32%	1958.4	9.37%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-5.985e-01	1.0000	117.0	2.78%	585.0	2.80%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-5.928e-01	1.0000	10.0	0.24%	50.2	0.24%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-5.896e-01	1.0000	339.0	8.04%	1691.6	8.09%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-5.666e-01	1.0000	41.0	0.97%	207.4	0.99%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.513e-01	1.0000	206.0	4.89%	1033.7	4.95%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-5.501e-01	1.0000	628.0	14.90%	3134.4	15.00%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-5.488e-01	1.0000	933.0	22.14%	4650.5	22.25%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.340e-01	1.0000	867.0	20.57%	4325.3	20.70%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-5.320e-01	1.0000	1387.0	32.91%	6908.8	33.06%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.237e-01	1.0000	13.0	0.31%	67.2	0.32%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-4.909e-01	1.0000	818.0	19.41%	4090.5	19.57%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-4.733e-01	1.0000	803.0	19.05%	4019.4	19.23%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-4.439e-01	1.0000	4212.0	99.93%	20883.6	99.93%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-4.422e-01	1.0000	29.0	0.69%	152.8	0.73%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-4.365e-01	1.0000	215.0	5.10%	1091.4	5.22%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-4.365e-01	1.0000	893.0	21.19%	4475.6	21.42%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-4.307e-01	1.0000	2.0	0.05%	11.4	0.05%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-4.101e-01	1.0000	1371.0	32.53%	6859.0	32.82%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-3.968e-01	1.0000	731.0	17.34%	3677.3	17.60%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.762e-01	1.0000	216.0	5.12%	1104.1	5.28%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-3.732e-01	1.0000	157.0	3.72%	807.6	3.86%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-3.201e-01	1.0000	627.0	14.88%	3176.0	15.20%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.140e-01	1.0000	1621.0	38.46%	8131.7	38.91%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.998e-01	1.0000	241.0	5.72%	1242.7	5.95%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.819e-01	1.0000	191.0	4.53%	992.6	4.75%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.688e-01	1.0000	143.0	3.39%	750.7	3.59%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.653e-01	1.0000	3.0	0.07%	20.2	0.10%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.454e-01	1.0000	358.0	8.49%	1844.7	8.83%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.358e-01	1.0000	110.0	2.61%	586.1	2.80%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.353e-01	1.0000	627.0	14.88%	3200.8	15.32%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.277e-01	1.0000	23.0	0.55%	133.4	0.64%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.197e-01	1.0000	39.0	0.93%	219.3	1.05%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.179e-01	1.0000	99.0	2.35%	532.9	2.55%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-2.143e-01	1.0000	2001.0	47.47%	10058.5	48.13%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.139e-01	1.0000	177.0	4.20%	933.8	4.47%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.073e-01	1.0000	438.0	10.39%	2258.4	10.81%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.044e-01	1.0000	6.0	0.14%	40.5	0.19%
 Ik-1	NHTTGGGAATRCC	1e0	-2.017e-01	1.0000	4215.0	100.00%	20898.3	100.00%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.987e-01	1.0000	369.0	8.75%	1912.7	9.15%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.970e-01	1.0000	165.0	3.91%	875.9	4.19%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.853e-01	1.0000	18.0	0.43%	109.6	0.52%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.777e-01	1.0000	1372.0	32.55%	6949.4	33.25%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.711e-01	1.0000	73.0	1.73%	404.2	1.93%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.514e-01	1.0000	144.0	3.42%	777.9	3.72%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.480e-01	1.0000	679.0	16.11%	3495.5	16.73%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.369e-01	1.0000	438.0	10.39%	2283.1	10.93%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.235e-01	1.0000	165.0	3.91%	894.0	4.28%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.230e-01	1.0000	208.0	4.93%	1115.2	5.34%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.173e-01	1.0000	12.0	0.28%	81.4	0.39%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.170e-01	1.0000	414.0	9.82%	2170.5	10.39%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.088e-01	1.0000	1577.0	37.41%	8014.3	38.35%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.041e-01	1.0000	117.0	2.78%	649.4	3.11%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-8.533e-02	1.0000	34.0	0.81%	210.7	1.01%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-8.093e-02	1.0000	240.0	5.69%	1297.7	6.21%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-7.859e-02	1.0000	298.0	7.07%	1597.2	7.64%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-7.125e-02	1.0000	363.0	8.61%	1935.0	9.26%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.487e-02	1.0000	323.0	7.66%	1734.3	8.30%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-6.185e-02	1.0000	141.0	3.35%	791.1	3.79%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-5.625e-02	1.0000	50.0	1.19%	306.3	1.47%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-5.596e-02	1.0000	2.0	0.05%	23.3	0.11%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-5.215e-02	1.0000	295.0	7.00%	1599.7	7.65%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-4.874e-02	1.0000	1531.0	36.32%	7848.1	37.55%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-4.851e-02	1.0000	117.0	2.78%	671.2	3.21%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-4.805e-02	1.0000	293.0	6.95%	1592.3	7.62%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-4.793e-02	1.0000	1278.0	30.32%	6584.5	31.51%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-4.640e-02	1.0000	380.0	9.02%	2042.6	9.77%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.268e-02	1.0000	375.0	8.90%	2020.8	9.67%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-4.221e-02	1.0000	281.0	6.67%	1535.2	7.35%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-4.148e-02	1.0000	664.0	15.75%	3498.7	16.74%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.137e-02	1.0000	470.0	11.15%	2509.3	12.01%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-4.064e-02	1.0000	439.0	10.42%	2351.2	11.25%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-3.455e-02	1.0000	164.0	3.89%	930.5	4.45%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-3.344e-02	1.0000	8.0	0.19%	69.9	0.33%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-3.306e-02	1.0000	1209.0	28.68%	6263.2	29.97%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-3.252e-02	1.0000	722.0	17.13%	3806.3	18.21%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.210e-02	1.0000	94.0	2.23%	558.9	2.67%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-3.074e-02	1.0000	651.0	15.44%	3448.7	16.50%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.743e-02	1.0000	211.0	5.01%	1185.2	5.67%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.686e-02	1.0000	742.0	17.60%	3918.8	18.75%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-2.669e-02	1.0000	4206.0	99.79%	20874.0	99.88%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.604e-02	1.0000	38.0	0.90%	252.2	1.21%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.586e-02	1.0000	584.0	13.86%	3115.6	14.91%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-2.350e-02	1.0000	325.0	7.71%	1786.7	8.55%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.313e-02	1.0000	1152.0	27.33%	5999.8	28.71%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.218e-02	1.0000	776.0	18.41%	4101.8	19.63%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.127e-02	1.0000	57.0	1.35%	363.3	1.74%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.796e-02	1.0000	4214.0	99.98%	20898.3	100.00%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.785e-02	1.0000	60.0	1.42%	383.8	1.84%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.677e-02	1.0000	399.0	9.47%	2183.7	10.45%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.622e-02	1.0000	488.0	11.58%	2645.0	12.66%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.506e-02	1.0000	356.0	8.45%	1964.8	9.40%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.307e-02	1.0000	3.0	0.07%	40.3	0.19%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.269e-02	1.0000	345.0	8.19%	1913.0	9.15%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.050e-02	1.0000	180.0	4.27%	1049.9	5.02%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.981e-03	1.0000	261.0	6.19%	1484.7	7.10%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-7.033e-03	1.0000	14.0	0.33%	123.6	0.59%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.588e-03	1.0000	39.0	0.93%	278.3	1.33%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-6.175e-03	1.0000	887.0	21.04%	4730.2	22.63%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.767e-03	1.0000	978.0	23.20%	5205.6	24.91%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-3.431e-03	1.0000	100.0	2.37%	638.8	3.06%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.548e-03	1.0000	1090.0	25.86%	5803.0	27.77%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.298e-03	1.0000	77.0	1.83%	515.8	2.47%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.199e-03	1.0000	341.0	8.09%	1950.7	9.33%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.038e-03	1.0000	709.0	16.82%	3868.8	18.51%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.755e-03	1.0000	572.0	13.57%	3166.7	15.15%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.534e-03	1.0000	294.0	6.98%	1711.5	8.19%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.522e-03	1.0000	84.0	1.99%	562.8	2.69%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.521e-03	1.0000	1345.0	31.91%	7116.9	34.05%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.421e-03	1.0000	279.0	6.62%	1633.9	7.82%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.331e-03	1.0000	1745.0	41.40%	9128.4	43.68%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.001e-03	1.0000	1648.0	39.10%	8657.4	41.43%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-9.230e-04	1.0000	411.0	9.75%	2347.0	11.23%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-6.060e-04	1.0000	610.0	14.47%	3401.3	16.28%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.930e-04	1.0000	47.0	1.12%	358.4	1.72%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-5.840e-04	1.0000	875.0	20.76%	4770.4	22.83%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.160e-04	1.0000	67.0	1.59%	483.3	2.31%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.720e-04	1.0000	166.0	3.94%	1056.4	5.05%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.510e-04	1.0000	676.0	16.04%	3775.0	18.06%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.450e-04	1.0000	75.0	1.78%	538.5	2.58%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-2.130e-04	1.0000	1088.0	25.81%	5898.0	28.22%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.720e-04	1.0000	625.0	14.83%	3521.2	16.85%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.130e-04	1.0000	1623.0	38.51%	8627.8	41.28%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-9.400e-05	1.0000	156.0	3.70%	1020.7	4.88%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-9.300e-05	1.0000	203.0	4.82%	1283.9	6.14%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-9.000e-05	1.0000	371.0	8.80%	2198.8	10.52%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-8.700e-05	1.0000	520.0	12.34%	2991.5	14.31%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.600e-05	1.0000	201.0	4.77%	1276.1	6.11%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-7.500e-05	1.0000	1564.0	37.11%	8347.0	39.94%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-7.400e-05	1.0000	254.0	6.03%	1569.9	7.51%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-4.500e-05	1.0000	23.0	0.55%	231.8	1.11%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.100e-05	1.0000	196.0	4.65%	1260.8	6.03%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.900e-05	1.0000	1469.0	34.85%	7906.0	37.83%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.700e-05	1.0000	645.0	15.30%	3695.4	17.68%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.000e-05	1.0000	301.0	7.14%	1870.4	8.95%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-9.000e-06	1.0000	1184.0	28.09%	6501.7	31.11%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-7.000e-06	1.0000	1196.0	28.37%	6573.5	31.45%
SeqBias: CG bias	SSSSSSSSSS	1e0	-4.000e-06	1.0000	3432.0	81.42%	17551.9	83.99%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-3.000e-06	1.0000	73.0	1.73%	582.2	2.79%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-3.000e-06	1.0000	502.0	11.91%	2983.2	14.27%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.000e-06	1.0000	1323.0	31.39%	7244.1	34.66%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.000e-06	1.0000	141.0	3.35%	998.5	4.78%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.000e-06	1.0000	436.0	10.34%	2642.4	12.64%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.000e-06	1.0000	904.0	21.45%	5119.3	24.50%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.000e-06	1.0000	571.0	13.55%	3375.0	16.15%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.000e-06	1.0000	967.0	22.94%	5459.2	26.12%
Tal1	CATCTG	1e0	-1.000e-06	1.0000	843.0	20.00%	4826.4	23.09%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.000e-06	1.0000	2048.0	48.59%	10936.3	52.33%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.000e-06	1.0000	1867.0	44.29%	10038.3	48.03%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	363.0	8.61%	2274.4	10.88%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	1946.0	46.17%	10464.4	50.07%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-0.000e+00	1.0000	789.0	18.72%	4584.3	21.94%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-0.000e+00	1.0000	790.0	18.74%	4597.0	22.00%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-0.000e+00	1.0000	628.0	14.90%	3741.8	17.91%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-0.000e+00	1.0000	427.0	10.13%	2661.3	12.73%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	165.0	3.91%	1191.8	5.70%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-0.000e+00	1.0000	740.0	17.56%	4365.0	20.89%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-0.000e+00	1.0000	1879.0	44.58%	10193.6	48.78%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-0.000e+00	1.0000	611.0	14.50%	3700.1	17.71%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-0.000e+00	1.0000	263.0	6.24%	1787.6	8.55%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	1178.0	27.95%	6675.8	31.94%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-0.000e+00	1.0000	1459.0	34.61%	8118.1	38.85%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-0.000e+00	1.0000	1385.0	32.86%	7744.5	37.06%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-0.000e+00	1.0000	1567.0	37.18%	8676.2	41.52%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-0.000e+00	1.0000	1368.0	32.46%	7674.8	36.72%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-0.000e+00	1.0000	1563.0	37.08%	8668.6	41.48%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-0.000e+00	1.0000	942.0	22.35%	5482.3	26.23%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-0.000e+00	1.0000	762.0	18.08%	4537.3	21.71%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-0.000e+00	1.0000	887.0	21.04%	5202.7	24.90%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-0.000e+00	1.0000	1377.0	32.67%	7753.2	37.10%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-0.000e+00	1.0000	1610.0	38.20%	8937.6	42.77%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-0.000e+00	1.0000	1375.0	32.62%	7766.3	37.16%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	1866.0	44.27%	10248.8	49.04%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-0.000e+00	1.0000	2794.0	66.29%	14775.1	70.70%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-0.000e+00	1.0000	468.0	11.10%	3000.1	14.36%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-0.000e+00	1.0000	1569.0	37.22%	8764.6	41.94%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-0.000e+00	1.0000	1655.0	39.26%	9210.7	44.07%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	1959.0	46.48%	10738.6	51.38%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	1073.0	25.46%	6269.9	30.00%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-0.000e+00	1.0000	1241.0	29.44%	7190.1	34.41%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-0.000e+00	1.0000	1559.0	36.99%	8819.1	42.20%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-0.000e+00	1.0000	1691.0	40.12%	9489.4	45.41%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-0.000e+00	1.0000	621.0	14.73%	3940.8	18.86%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-0.000e+00	1.0000	2602.0	61.73%	13995.5	66.97%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	922.0	21.87%	5587.2	26.74%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-0.000e+00	1.0000	1219.0	28.92%	7151.3	34.22%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-0.000e+00	1.0000	2333.0	55.35%	12740.1	60.96%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-0.000e+00	1.0000	231.0	5.48%	1793.4	8.58%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-0.000e+00	1.0000	1625.0	38.55%	9282.5	44.42%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-0.000e+00	1.0000	3528.0	83.70%	18342.8	87.77%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-0.000e+00	1.0000	2156.0	51.15%	11957.3	57.22%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-0.000e+00	1.0000	1785.0	42.35%	10134.8	48.50%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-0.000e+00	1.0000	1245.0	29.54%	7392.6	35.37%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-0.000e+00	1.0000	2070.0	49.11%	11569.0	55.36%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	0.000e+00	1.0000	834.0	19.79%	5647.1	27.02%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	2244.0	53.24%	12554.3	60.07%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	1945.0	46.14%	11240.1	53.78%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	0.000e+00	1.0000	1058.0	25.10%	6756.0	32.33%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	0.000e+00	1.0000	2195.0	52.08%	12569.5	60.15%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	0.000e+00	1.0000	3113.0	73.86%	18145.1	86.83%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	1847.0	43.82%	10514.1	50.31%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	0.000e+00	1.0000	3090.0	73.31%	17479.6	83.64%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	3047.0	72.29%	17807.1	85.21%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	1.4	0.01%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	0.000e+00	1.0000	1944.0	46.12%	12107.5	57.94%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	0.000e+00	1.0000	452.0	10.72%	3217.0	15.39%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	0.000e+00	1.0000	2198.0	52.15%	12368.2	59.18%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.3	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	1.3	0.01%
SeqBias: CA-repeat	CACACACACA	1e0	0.000e+00	1.0000	3013.0	71.48%	16751.5	80.16%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	0.000e+00	1.0000	4153.0	98.53%	20867.8	99.85%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	0.000e+00	1.0000	2053.0	48.71%	11535.9	55.20%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	0.000e+00	1.0000	901.0	21.38%	5808.3	27.79%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	0.000e+00	1.0000	1901.0	45.10%	10841.6	51.88%