Information for 8-CSTATATA (Motif 6)


Reverse Opposite:

p-value:1e-41
log p-value:-9.512e+01
Information Content per bp:1.704
Number of Target Sequences with motif1718.0
Percentage of Target Sequences with motif40.76%
Number of Background Sequences with motif6454.0
Percentage of Background Sequences with motif30.88%
Average Position of motif in Targets398.8 +/- 338.2bp
Average Position of motif in Background282.1 +/- 197.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.48
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-box/SacCer-Promoters/Homer

Match Rank:1
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:CSTATATA----
--TATATAWDVV

MOT2/MA0379.1/Jaspar

Match Rank:2
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:CSTATATA
--TATAT-

Cf2/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.80
Offset:1
Orientation:forward strand
Alignment:CSTATATA--
-GTATATATA

Cf2/MA0015.1/Jaspar

Match Rank:4
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CSTATATA---
-GTATATATAC

POL012.1_TATA-Box/Jaspar

Match Rank:5
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CSTATATA--------
-GTATAAAAGGCGGGG

TBP/MA0108.2/Jaspar

Match Rank:6
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CSTATATA--------
-GTATAAAAGGCGGGG

TBP(- other)/several species/AthaMap

Match Rank:7
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CSTATATA----
ACTATAAATACC

bin/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CSTATATA
-ATAAATA

PB0163.1_Six6_2/Jaspar

Match Rank:9
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CSTATATA------
ANNNGGATATATCCNNN

nub/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CSTATATA-
GCTTGCATAA