Information for 19-GAAAAATT (Motif 13)


Reverse Opposite:

p-value:1e-22
log p-value:-5.236e+01
Information Content per bp:1.812
Number of Target Sequences with motif686.0
Percentage of Target Sequences with motif15.62%
Number of Background Sequences with motif2020.5
Percentage of Background Sequences with motif10.71%
Average Position of motif in Targets376.3 +/- 329.6bp
Average Position of motif in Background307.6 +/- 198.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

cad/dmmpmm(Down)/fly

Match Rank:1
Score:0.88
Offset:1
Orientation:forward strand
Alignment:GAAAAATT-
-AAAAATTT

SFP1/SacCer-Promoters/Homer

Match Rank:2
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GAAAAATT----
RAAAATTTTTHH

SUM1/MA0398.1/Jaspar

Match Rank:3
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:GAAAAATT--
-AAAAATTTT

SFP1/MA0378.1/Jaspar

Match Rank:4
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----GAAAAATT--------
CNGNAGAAAATTTTTTNNNNT

STB3/MA0390.1/Jaspar

Match Rank:5
Score:0.78
Offset:-7
Orientation:reverse strand
Alignment:-------GAAAAATT------
NNNNAGTGAAAAATTTTNGAC

gt/dmmpmm(SeSiMCMC)/fly

Match Rank:6
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GAAAAATT
TAAAAA--

hb/dmmpmm(SeSiMCMC)/fly

Match Rank:7
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GAAAAATT
AAAAAA--

DOF2.5/MA0977.1/Jaspar

Match Rank:8
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GAAAAATT-
-AAAAAGTG

hb/dmmpmm(Pollard)/fly

Match Rank:9
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GAAAAATT
ATAAAAAA-

PB0146.1_Mafk_2/Jaspar

Match Rank:10
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GAAAAATT------
GAAAAAATTGCAAGG