Forward Reverse Complement
HOMER correlation HOMER motif name HOMER motif PWM ENCODE correlation ENCODE motif name ENCODE motif PWM CISBP correlation CISBP motif name CISBP motif PWM
0.85 X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer 0.9 >RFX3_4Rfx3_jolma_DBD_M244 0.9 M6077_1.02.txt
0.83 Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer 0.87 >NFATC1_3NFATC1_jolma_full_M188 0.87 NFATC1
0.82 Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer 0.87 >RFX5_known9RFX5_2RFX5_jolma_DBD_M241 0.87 RFX5
0.82 RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer 0.87 >RFX5_known8RFX5_1RFX5_jolma_DBD_M240 0.87 RFX5
0.74 OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer 0.86 >RFX2_1RFX2_jolma_DBD_M234 0.87 RFX5
0.71 NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer 0.84 >RFX2_3Rfx2_jolma_DBD_M242 0.86 RFX2
0.69 ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer 0.82 >RFX3_2RFX3_jolma_DBD_M236 0.85 RFX3
0.68 Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer 0.78 >RFX5_known6RFX4_2RFX4_jolma_DBD_M238 0.84 M6075_1.02.txt
0.67 Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer 0.78 >MYC_disc4 MAX_H1-hESC_encode-Snyder_seq_hsa_r1:MDscan#2#Intergenic 0.82 RFX3
0.67 Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer 0.78 >SREBP_disc1 SREBF1_HepG2_encode-Snyder_seq_hsa_insulin_r1:MEME#2#Intergenic 0.79 RFX2