ChromHMM Report

Input Directory: /srv/gsfs0/projects/kundaje/users/annashch/chetty_chrom_hmm/CHETTY_DATA_HG19
Output Directory: /srv/gsfs0/projects/kundaje/users/annashch/chetty_chrom_hmm/OUTPUT_CHETTY
Number of States: 8
Assembly: hg19
Full ChromHMM command: LearnModel -p 0 /srv/gsfs0/projects/kundaje/users/annashch/chetty_chrom_hmm/CHETTY_DATA_HG19 /srv/gsfs0/projects/kundaje/users/annashch/chetty_chrom_hmm/OUTPUT_CHETTY 8 hg19

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • H9_8 Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • H9_8 Browser Custom Track Dense File
  • H9_8 Browser Custom Track Expanded File

    State Enrichments

    H9_8 Enrichments


  • H9_8 Overlap Enrichment SVG File
  • H9_8 Overlap Enrichment Tab-Delimited Text File

  • H9_8_RefSeqTES_neighborhood Enrichment SVG File
  • H9_8_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • H9_8_RefSeqTSS_neighborhood Enrichment SVG File
  • H9_8_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File