Figure A: We show the motifs discovered by DiChIPMunk, HOMER, and MEME. We run these methods on the peaks, or on seqlets (i.e. high-importance windows of sequence identified by the neural network). Note that running these methods on seqlets generally gives a large advantage, which TF-MoDISco seeks to leverage further.
| Motif | Supporting sequences | PWM |
|---|---|---|
| 1 | 2000 |
|
| 2 | 2000 |
|
| 3 | 1990 |
|
| 4 | 1648 |
|
| 5 | 1060 |
|
| 6 | 353 |
|
| 7 | 153 |
|
| 8 | 125 |
|
| 9 | 102 |
|
| 10 | 45 |
|
