Figure A: We show the motifs discovered by DiChIPMunk, HOMER, and MEME. We run these methods on the peaks, or on seqlets (i.e. high-importance windows of sequence identified by the neural network). Note that running these methods on seqlets generally gives a large advantage, which TF-MoDISco seeks to leverage further.
| Motif | Supporting sequences | PWM |
|---|---|---|
| 1 | 1998 |
|
| 2 | 2000 |
|
| 3 | 2000 |
|
| 4 | 1923 |
|
| 5 | 1327 |
|
| 6 | 672 |
|
| 7 | 381 |
|
| 8 | 156 |
|
| 9 | 93 |
|
| 10 | 56 |
|
