******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YRR1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:81948-82255 1.0000 100 chrI:138998-139341 1.0000 100 chrI:166170-166632 1.0000 100 chrII:6808-7095 1.0000 100 chrII:9457-9853 1.0000 100 chrII:36249-36590 1.0000 100 chrII:36737-36928 1.0000 100 chrII:45021-45316 1.0000 100 chrII:45610-46341 1.0000 100 chrII:60635-61398 1.0000 100 chrII:87958-88571 1.0000 100 chrII:89666-89973 1.0000 100 chrII:165106-165374 1.0000 100 chrII:167936-168165 1.0000 100 chrII:181174-181613 1.0000 100 chrII:197171-197803 1.0000 100 chrII:217131-217373 1.0000 100 chrII:226963-227343 1.0000 100 chrII:236529-237284 1.0000 100 chrII:254489-254885 1.0000 100 chrII:255083-255655 1.0000 100 chrII:256348-256783 1.0000 100 chrII:266236-266956 1.0000 100 chrII:311146-311949 1.0000 100 chrII:326503-327191 1.0000 100 chrII:332345-333085 1.0000 100 chrII:347423-347931 1.0000 100 chrII:350595-350956 1.0000 100 chrII:393361-395322 1.0000 100 chrII:405656-406185 1.0000 100 chrII:415533-416272 1.0000 100 chrII:477101-477409 1.0000 100 chrII:530528-530767 1.0000 100 chrII:544564-546031 1.0000 100 chrII:580027-581150 1.0000 100 chrII:592257-592645 1.0000 100 chrII:592944-593251 1.0000 100 chrII:604165-606048 1.0000 100 chrII:644990-645443 1.0000 100 chrIII:87-2044 1.0000 100 chrIII:13960-14594 1.0000 100 chrIII:82463-82643 1.0000 100 chrIII:90782-91072 1.0000 100 chrIII:123495-123784 1.0000 100 chrIII:127560-127866 1.0000 100 chrIII:137627-139017 1.0000 100 chrIII:142385-142954 1.0000 100 chrIII:149717-150233 1.0000 100 chrIII:151126-151560 1.0000 100 chrIII:162519-163348 1.0000 100 chrIII:163513-163828 1.0000 100 chrIII:168102-168510 1.0000 100 chrIII:178380-178712 1.0000 100 chrIII:227794-228180 1.0000 100 chrIII:295355-295946 1.0000 100 chrIII:308696-308965 1.0000 100 chrIV:83427-83803 1.0000 100 chrIV:117181-118195 1.0000 100 chrIV:129898-130932 1.0000 100 chrIV:208993-209617 1.0000 100 chrIV:216644-218071 1.0000 100 chrIV:221447-222387 1.0000 100 chrIV:229551-230505 1.0000 100 chrIV:308043-308369 1.0000 100 chrIV:321691-321934 1.0000 100 chrIV:322219-323569 1.0000 100 chrIV:331078-332862 1.0000 100 chrIV:340513-341616 1.0000 100 chrIV:357940-358375 1.0000 100 chrIV:359187-359794 1.0000 100 chrIV:410239-410451 1.0000 100 chrIV:411339-411576 1.0000 100 chrIV:434106-435153 1.0000 100 chrIV:437572-438589 1.0000 100 chrIV:464068-470794 1.0000 100 chrIV:488534-488988 1.0000 100 chrIV:490342-491241 1.0000 100 chrIV:491505-492623 1.0000 100 chrIV:507767-509475 1.0000 100 chrIV:519650-519900 1.0000 100 chrIV:520672-521110 1.0000 100 chrIV:539007-539209 1.0000 100 chrIV:541172-541870 1.0000 100 chrIV:555791-556461 1.0000 100 chrIV:568736-569535 1.0000 100 chrIV:579071-580423 1.0000 100 chrIV:580594-580813 1.0000 100 chrIV:600781-601529 1.0000 100 chrIV:601958-602292 1.0000 100 chrIV:619778-620389 1.0000 100 chrIV:667787-668569 1.0000 100 chrIV:757470-758456 1.0000 100 chrIV:802591-802841 1.0000 100 chrIV:884292-884739 1.0000 100 chrIV:945806-946592 1.0000 100 chrIV:992676-993188 1.0000 100 chrIV:1016930-1017656 1.0000 100 chrIV:1075332-1075704 1.0000 100 chrIV:1095181-1095717 1.0000 100 chrIV:1150701-1151145 1.0000 100 chrIV:1175625-1176259 1.0000 100 chrIV:1176544-1176710 1.0000 100 chrIV:1201061-1201920 1.0000 100 chrIV:1236431-1238001 1.0000 100 chrIV:1278741-1279014 1.0000 100 chrIV:1300023-1301288 1.0000 100 chrIV:1301761-1302142 1.0000 100 chrIV:1305195-1306564 1.0000 100 chrIV:1328953-1329643 1.0000 100 chrIV:1352377-1353091 1.0000 100 chrIV:1354385-1355570 1.0000 100 chrIV:1355749-1355986 1.0000 100 chrIV:1359457-1361108 1.0000 100 chrIV:1401302-1401951 1.0000 100 chrIV:1402727-1403277 1.0000 100 chrIV:1450211-1451195 1.0000 100 chrIV:1461355-1461846 1.0000 100 chrIV:1489145-1489850 1.0000 100 chrIX:59627-60069 1.0000 100 chrIX:67710-68496 1.0000 100 chrIX:68654-69540 1.0000 100 chrIX:98424-99428 1.0000 100 chrIX:99676-99967 1.0000 100 chrIX:174691-175380 1.0000 100 chrIX:183292-183670 1.0000 100 chrIX:197425-198058 1.0000 100 chrIX:210660-210961 1.0000 100 chrIX:214966-216424 1.0000 100 chrIX:248522-249393 1.0000 100 chrIX:254270-254512 1.0000 100 chrIX:257395-258161 1.0000 100 chrIX:299984-300522 1.0000 100 chrIX:316141-316545 1.0000 100 chrIX:316699-317650 1.0000 100 chrIX:324119-324533 1.0000 100 chrIX:325577-326049 1.0000 100 chrIX:336130-336588 1.0000 100 chrIX:370258-370593 1.0000 100 chrV:6218-6581 1.0000 100 chrV:17185-17742 1.0000 100 chrV:53567-54433 1.0000 100 chrV:61089-62125 1.0000 100 chrV:67624-68623 1.0000 100 chrV:78098-79415 1.0000 100 chrV:85168-86280 1.0000 100 chrV:86432-86780 1.0000 100 chrV:99944-100281 1.0000 100 chrV:117548-118264 1.0000 100 chrV:130991-131325 1.0000 100 chrV:135214-135612 1.0000 100 chrV:138493-140040 1.0000 100 chrV:140201-140852 1.0000 100 chrV:176900-177470 1.0000 100 chrV:207352-207529 1.0000 100 chrV:207714-208006 1.0000 100 chrV:249667-251178 1.0000 100 chrV:269271-269858 1.0000 100 chrV:270416-270632 1.0000 100 chrV:287900-288754 1.0000 100 chrV:305834-306156 1.0000 100 chrV:311758-312270 1.0000 100 chrV:322069-323069 1.0000 100 chrV:354798-355392 1.0000 100 chrV:396211-396531 1.0000 100 chrV:396732-397569 1.0000 100 chrV:423117-423449 1.0000 100 chrV:431039-431489 1.0000 100 chrV:434397-435133 1.0000 100 chrV:435635-435931 1.0000 100 chrV:438534-438915 1.0000 100 chrV:441877-442632 1.0000 100 chrV:443104-443335 1.0000 100 chrV:469269-469728 1.0000 100 chrV:486777-487707 1.0000 100 chrV:551066-551643 1.0000 100 chrVI:4573-4757 1.0000 100 chrVI:64003-65339 1.0000 100 chrVI:95509-95792 1.0000 100 chrVI:101371-101590 1.0000 100 chrVI:137276-137817 1.0000 100 chrVI:157905-158196 1.0000 100 chrVI:162053-162380 1.0000 100 chrVI:167283-167705 1.0000 100 chrVI:180504-181208 1.0000 100 chrVI:191203-191749 1.0000 100 chrVI:210490-210932 1.0000 100 chrVI:221765-222046 1.0000 100 chrVI:223292-224839 1.0000 100 chrVI:226515-226903 1.0000 100 chrVII:1027-2026 1.0000 100 chrVII:110337-110787 1.0000 100 chrVII:115318-115702 1.0000 100 chrVII:121935-122510 1.0000 100 chrVII:149157-149453 1.0000 100 chrVII:185438-185790 1.0000 100 chrVII:205126-205746 1.0000 100 chrVII:227370-228246 1.0000 100 chrVII:254180-254727 1.0000 100 chrVII:277061-277348 1.0000 100 chrVII:287235-287632 1.0000 100 chrVII:300234-300367 1.0000 100 chrVII:310500-312229 1.0000 100 chrVII:319262-320122 1.0000 100 chrVII:328389-329255 1.0000 100 chrVII:329424-329894 1.0000 100 chrVII:364911-366627 1.0000 100 chrVII:405462-405792 1.0000 100 chrVII:412061-412559 1.0000 100 chrVII:422742-423426 1.0000 100 chrVII:438616-438869 1.0000 100 chrVII:440286-440923 1.0000 100 chrVII:479244-482906 1.0000 100 chrVII:531452-531803 1.0000 100 chrVII:533162-535187 1.0000 100 chrVII:541715-542138 1.0000 100 chrVII:544430-544832 1.0000 100 chrVII:555148-556682 1.0000 100 chrVII:556969-557986 1.0000 100 chrVII:561433-561704 1.0000 100 chrVII:609466-610077 1.0000 100 chrVII:648782-649342 1.0000 100 chrVII:658072-659173 1.0000 100 chrVII:661558-661911 1.0000 100 chrVII:700415-701159 1.0000 100 chrVII:706953-707192 1.0000 100 chrVII:726448-726727 1.0000 100 chrVII:726934-728091 1.0000 100 chrVII:730967-731419 1.0000 100 chrVII:736203-736999 1.0000 100 chrVII:738772-739501 1.0000 100 chrVII:774172-774584 1.0000 100 chrVII:779354-779701 1.0000 100 chrVII:787368-787843 1.0000 100 chrVII:788379-788696 1.0000 100 chrVII:794085-794505 1.0000 100 chrVII:798557-800136 1.0000 100 chrVII:806584-807548 1.0000 100 chrVII:823353-823674 1.0000 100 chrVII:824029-827311 1.0000 100 chrVII:828199-828952 1.0000 100 chrVII:845490-845914 1.0000 100 chrVII:857096-857594 1.0000 100 chrVII:876177-876906 1.0000 100 chrVII:878622-878997 1.0000 100 chrVII:882784-883945 1.0000 100 chrVII:892762-896604 1.0000 100 chrVII:930879-931145 1.0000 100 chrVII:939037-939587 1.0000 100 chrVII:1004038-1004412 1.0000 100 chrVII:1052333-1052674 1.0000 100 chrVIII:34436-35153 1.0000 100 chrVIII:62619-63025 1.0000 100 chrVIII:74844-75940 1.0000 100 chrVIII:103829-104299 1.0000 100 chrVIII:115958-116294 1.0000 100 chrVIII:125949-126266 1.0000 100 chrVIII:126479-127491 1.0000 100 chrVIII:132824-133353 1.0000 100 chrVIII:133585-134619 1.0000 100 chrVIII:145922-146745 1.0000 100 chrVIII:149001-149225 1.0000 100 chrVIII:149570-149727 1.0000 100 chrVIII:175086-175325 1.0000 100 chrVIII:237759-238077 1.0000 100 chrVIII:296741-297184 1.0000 100 chrVIII:358337-358758 1.0000 100 chrVIII:382953-383297 1.0000 100 chrVIII:388677-389200 1.0000 100 chrVIII:411001-411975 1.0000 100 chrVIII:451353-452969 1.0000 100 chrVIII:466906-467272 1.0000 100 chrVIII:475551-475911 1.0000 100 chrVIII:505860-506176 1.0000 100 chrVIII:555751-556362 1.0000 100 chrVIII:556952-557132 1.0000 100 chrX:59084-59454 1.0000 100 chrX:73426-74640 1.0000 100 chrX:74823-75663 1.0000 100 chrX:75893-76493 1.0000 100 chrX:90098-90392 1.0000 100 chrX:115827-116205 1.0000 100 chrX:139171-140097 1.0000 100 chrX:157490-157898 1.0000 100 chrX:197186-197519 1.0000 100 chrX:204554-204969 1.0000 100 chrX:212388-214885 1.0000 100 chrX:215750-216964 1.0000 100 chrX:227793-228579 1.0000 100 chrX:233192-234108 1.0000 100 chrX:348930-349432 1.0000 100 chrX:354158-354592 1.0000 100 chrX:355218-355737 1.0000 100 chrX:374227-374874 1.0000 100 chrX:378178-378574 1.0000 100 chrX:390925-391242 1.0000 100 chrX:391897-392077 1.0000 100 chrX:396576-396946 1.0000 100 chrX:414808-416242 1.0000 100 chrX:422668-423231 1.0000 100 chrX:424309-424706 1.0000 100 chrX:517678-518037 1.0000 100 chrX:523701-524341 1.0000 100 chrX:531619-532186 1.0000 100 chrX:538526-538729 1.0000 100 chrX:540997-541842 1.0000 100 chrX:542762-543245 1.0000 100 chrX:606109-608125 1.0000 100 chrX:617706-618085 1.0000 100 chrX:651262-651583 1.0000 100 chrX:651962-652870 1.0000 100 chrX:703298-703622 1.0000 100 chrXI:781-1056 1.0000 100 chrXI:46560-46979 1.0000 100 chrXI:67805-68016 1.0000 100 chrXI:74470-74785 1.0000 100 chrXI:84036-84409 1.0000 100 chrXI:108756-109051 1.0000 100 chrXI:140790-141299 1.0000 100 chrXI:158254-159619 1.0000 100 chrXI:162433-162667 1.0000 100 chrXI:163391-164488 1.0000 100 chrXI:202291-203049 1.0000 100 chrXI:219586-220102 1.0000 100 chrXI:259121-259893 1.0000 100 chrXI:282821-284487 1.0000 100 chrXI:302742-303227 1.0000 100 chrXI:307964-308454 1.0000 100 chrXI:313267-313594 1.0000 100 chrXI:334130-334956 1.0000 100 chrXI:340161-340959 1.0000 100 chrXI:379503-379916 1.0000 100 chrXI:382234-382407 1.0000 100 chrXI:430885-431605 1.0000 100 chrXI:457630-459314 1.0000 100 chrXI:490777-491336 1.0000 100 chrXI:513220-513516 1.0000 100 chrXI:517798-518063 1.0000 100 chrXI:519914-521197 1.0000 100 chrXI:578797-579414 1.0000 100 chrXI:618836-619284 1.0000 100 chrXI:666619-666777 1.0000 100 chrXII:54-208 1.0000 100 chrXII:47864-49481 1.0000 100 chrXII:92425-92726 1.0000 100 chrXII:96116-96313 1.0000 100 chrXII:167757-168199 1.0000 100 chrXII:198669-199682 1.0000 100 chrXII:201737-202687 1.0000 100 chrXII:214728-215067 1.0000 100 chrXII:232089-234212 1.0000 100 chrXII:238757-239132 1.0000 100 chrXII:241684-241973 1.0000 100 chrXII:242189-243512 1.0000 100 chrXII:262463-263932 1.0000 100 chrXII:282721-283845 1.0000 100 chrXII:348219-348722 1.0000 100 chrXII:366045-366523 1.0000 100 chrXII:368724-369560 1.0000 100 chrXII:369704-370241 1.0000 100 chrXII:374214-374766 1.0000 100 chrXII:424204-424415 1.0000 100 chrXII:426837-427438 1.0000 100 chrXII:448508-448960 1.0000 100 chrXII:459645-460114 1.0000 100 chrXII:460489-460682 1.0000 100 chrXII:498233-499890 1.0000 100 chrXII:521813-522414 1.0000 100 chrXII:592094-592719 1.0000 100 chrXII:605241-605598 1.0000 100 chrXII:628038-629056 1.0000 100 chrXII:636699-639939 1.0000 100 chrXII:656846-657164 1.0000 100 chrXII:673560-674179 1.0000 100 chrXII:687670-687901 1.0000 100 chrXII:713181-713502 1.0000 100 chrXII:732005-732278 1.0000 100 chrXII:734626-734934 1.0000 100 chrXII:781496-781833 1.0000 100 chrXII:784076-784520 1.0000 100 chrXII:793751-795313 1.0000 100 chrXII:796317-796816 1.0000 100 chrXII:796997-797265 1.0000 100 chrXII:818499-818721 1.0000 100 chrXII:818902-819108 1.0000 100 chrXII:819899-820284 1.0000 100 chrXII:822190-823328 1.0000 100 chrXII:837712-839401 1.0000 100 chrXII:855759-857556 1.0000 100 chrXII:875252-875975 1.0000 100 chrXII:897745-899093 1.0000 100 chrXII:919389-921176 1.0000 100 chrXII:922143-922594 1.0000 100 chrXII:932127-932464 1.0000 100 chrXII:962623-963360 1.0000 100 chrXII:975795-976098 1.0000 100 chrXII:1017339-1019362 1.0000 100 chrXII:1028250-1028534 1.0000 100 chrXII:1051973-1052228 1.0000 100 chrXIII:91152-92100 1.0000 100 chrXIII:117014-118713 1.0000 100 chrXIII:131567-132200 1.0000 100 chrXIII:145882-146227 1.0000 100 chrXIII:163452-164330 1.0000 100 chrXIII:168692-168999 1.0000 100 chrXIII:195936-196295 1.0000 100 chrXIII:224108-224425 1.0000 100 chrXIII:225368-225680 1.0000 100 chrXIII:259033-259442 1.0000 100 chrXIII:282327-282495 1.0000 100 chrXIII:282783-283039 1.0000 100 chrXIII:288078-289680 1.0000 100 chrXIII:290541-291099 1.0000 100 chrXIII:296391-298846 1.0000 100 chrXIII:302856-303964 1.0000 100 chrXIII:320978-321678 1.0000 100 chrXIII:334944-335212 1.0000 100 chrXIII:352111-352433 1.0000 100 chrXIII:362940-363313 1.0000 100 chrXIII:372200-372746 1.0000 100 chrXIII:378761-379591 1.0000 100 chrXIII:420346-420843 1.0000 100 chrXIII:463432-463853 1.0000 100 chrXIII:473015-473190 1.0000 100 chrXIII:480434-480840 1.0000 100 chrXIII:499120-500754 1.0000 100 chrXIII:504701-505275 1.0000 100 chrXIII:551403-551763 1.0000 100 chrXIII:551907-552290 1.0000 100 chrXIII:552513-553097 1.0000 100 chrXIII:572527-573151 1.0000 100 chrXIII:586492-586851 1.0000 100 chrXIII:626163-626849 1.0000 100 chrXIII:650835-651094 1.0000 100 chrXIII:652061-652868 1.0000 100 chrXIII:700701-701481 1.0000 100 chrXIII:701754-703307 1.0000 100 chrXIII:732041-733151 1.0000 100 chrXIII:747741-748138 1.0000 100 chrXIII:754451-754806 1.0000 100 chrXIII:768212-768438 1.0000 100 chrXIII:808141-808497 1.0000 100 chrXIII:837725-838180 1.0000 100 chrXIII:887012-889247 1.0000 100 chrXIV:24172-26782 1.0000 100 chrXIV:63160-64502 1.0000 100 chrXIV:88989-89929 1.0000 100 chrXIV:96040-96460 1.0000 100 chrXIV:102582-103087 1.0000 100 chrXIV:104629-105103 1.0000 100 chrXIV:217376-217593 1.0000 100 chrXIV:241434-241756 1.0000 100 chrXIV:282671-283455 1.0000 100 chrXIV:302662-303829 1.0000 100 chrXIV:330370-331057 1.0000 100 chrXIV:349905-350074 1.0000 100 chrXIV:374731-375095 1.0000 100 chrXIV:413586-414853 1.0000 100 chrXIV:442863-444776 1.0000 100 chrXIV:493800-495063 1.0000 100 chrXIV:495229-495550 1.0000 100 chrXIV:499645-500718 1.0000 100 chrXIV:518670-519126 1.0000 100 chrXIV:546598-547444 1.0000 100 chrXIV:560182-560788 1.0000 100 chrXIV:568049-568484 1.0000 100 chrXIV:569512-570039 1.0000 100 chrXIV:574917-576104 1.0000 100 chrXIV:585478-586279 1.0000 100 chrXIV:602090-602554 1.0000 100 chrXIV:631730-632021 1.0000 100 chrXIV:632489-632852 1.0000 100 chrXIV:715974-716622 1.0000 100 chrXIV:725748-726345 1.0000 100 chrXIV:783838-784317 1.0000 100 chrXV:79753-80107 1.0000 100 chrXV:80409-81152 1.0000 100 chrXV:87446-88126 1.0000 100 chrXV:92800-94774 1.0000 100 chrXV:110844-111178 1.0000 100 chrXV:113418-113878 1.0000 100 chrXV:161142-161656 1.0000 100 chrXV:168037-168403 1.0000 100 chrXV:216315-216623 1.0000 100 chrXV:226591-226808 1.0000 100 chrXV:228008-228622 1.0000 100 chrXV:253133-253652 1.0000 100 chrXV:274527-274970 1.0000 100 chrXV:281890-282547 1.0000 100 chrXV:288077-288390 1.0000 100 chrXV:300906-301633 1.0000 100 chrXV:340133-340569 1.0000 100 chrXV:353934-354285 1.0000 100 chrXV:438373-439460 1.0000 100 chrXV:444627-446176 1.0000 100 chrXV:446712-447444 1.0000 100 chrXV:464303-464649 1.0000 100 chrXV:464871-465260 1.0000 100 chrXV:472071-472886 1.0000 100 chrXV:487432-487731 1.0000 100 chrXV:505154-505455 1.0000 100 chrXV:571676-572147 1.0000 100 chrXV:594045-594601 1.0000 100 chrXV:619251-620880 1.0000 100 chrXV:641401-642549 1.0000 100 chrXV:663474-664085 1.0000 100 chrXV:678201-679132 1.0000 100 chrXV:710073-710618 1.0000 100 chrXV:723034-724775 1.0000 100 chrXV:759088-759498 1.0000 100 chrXV:779743-780930 1.0000 100 chrXV:854018-854805 1.0000 100 chrXV:866548-866897 1.0000 100 chrXV:877177-877616 1.0000 100 chrXV:896631-898392 1.0000 100 chrXV:900226-901251 1.0000 100 chrXV:968155-968363 1.0000 100 chrXV:976381-976703 1.0000 100 chrXV:978869-979095 1.0000 100 chrXV:979862-981438 1.0000 100 chrXV:1003913-1005020 1.0000 100 chrXV:1025755-1026017 1.0000 100 chrXV:1027888-1029075 1.0000 100 chrXVI:55854-56352 1.0000 100 chrXVI:76219-76713 1.0000 100 chrXVI:172906-174067 1.0000 100 chrXVI:188654-188897 1.0000 100 chrXVI:189046-189208 1.0000 100 chrXVI:193487-194609 1.0000 100 chrXVI:209986-210447 1.0000 100 chrXVI:210588-210725 1.0000 100 chrXVI:210967-211111 1.0000 100 chrXVI:280703-281894 1.0000 100 chrXVI:282052-282964 1.0000 100 chrXVI:297009-298468 1.0000 100 chrXVI:302673-302941 1.0000 100 chrXVI:303074-304036 1.0000 100 chrXVI:338767-339124 1.0000 100 chrXVI:378706-378970 1.0000 100 chrXVI:404934-406057 1.0000 100 chrXVI:406214-408105 1.0000 100 chrXVI:432503-434400 1.0000 100 chrXVI:435652-436172 1.0000 100 chrXVI:520197-520494 1.0000 100 chrXVI:559989-560435 1.0000 100 chrXVI:571655-572470 1.0000 100 chrXVI:581904-582491 1.0000 100 chrXVI:622321-622818 1.0000 100 chrXVI:645463-646215 1.0000 100 chrXVI:689388-689843 1.0000 100 chrXVI:699777-700647 1.0000 100 chrXVI:718374-719367 1.0000 100 chrXVI:731963-732267 1.0000 100 chrXVI:744119-744523 1.0000 100 chrXVI:768984-769447 1.0000 100 chrXVI:775692-776031 1.0000 100 chrXVI:794499-794769 1.0000 100 chrXVI:810572-810886 1.0000 100 chrXVI:819344-819882 1.0000 100 chrXVI:856799-857071 1.0000 100 chrXVI:860207-860652 1.0000 100 chrXVI:879442-880510 1.0000 100 chrXVI:919190-920385 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YRR1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YRR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YRR1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 562 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56200 N= 562 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.302 C 0.198 G 0.198 T 0.302 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YRR1/background): A 0.312 C 0.188 G 0.188 T 0.312 ******************************************************************************** ******************************************************************************** MOTIF RGRATCGAACCSVKGACCTYMHSV MEME-1 width = 24 sites = 89 llr = 1569 E-value = 4.8e-311 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGRATCGAACCSVKGACCTYMHSV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:56:::aa::13:26::1133:4 pos.-specific C :::1:8:::a7632::76344343 probability G 6a52::a::::44581:211:163 matrix T :::1a2::::3::3:2326423:: bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * ** * Relative 1.4 * ****** * * Entropy 1.2 * ****** * * (25.4 bits) 1.0 ** ******** * * * 0.7 *** ******** * ** * 0.5 *** *********** *** * ** 0.2 ********************* ** 0.0 ------------------------ Multilevel GGAATCGAACCCGGGACCTCCCGA consensus A G T TGCTATT CTAACC sequence A T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRATCGAACCSVKGACCTYMHSV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chrXIV:631730-632021 + 32 3.86e-14 GGGCGAGCCG GGACTCGAACCCGGGACCTCCCGC ACCCTAAGCG chrXVI:860207-860652 - 36 4.66e-11 GCGCAAGCCC GGAATCGAACCGGGGGCCCAACGA TGGCAACGTT chrXVI:819344-819882 - 5 4.66e-11 GGTCTCTAGC GGGATCGAACCGCTGATCCCCGCG TTAT chrXV:281890-282547 - 32 4.66e-11 GCGCAAGCCC GGAATCGAACCGGGGGCCCAACGA TGGCAACGTT chrXII:1051973-1052228 + 32 4.66e-11 GGTCTCTAGC GGGATCGAACCGCTGATCCCCGCG TTATTAGCAC chrX:531619-532186 - 12 4.66e-11 GCGCAAGCCC GGAATCGAACCGGGGGCCCAACGA TGGCAACGTT chrX:396576-396946 + 26 4.66e-11 GCGCAAGCCC GGAATCGAACCGGGGGCCCAACGA TGGCAACGTT chrVII:930879-931145 + 2 4.66e-11 C GGAATCGAACCGGGGGCCCAACGA TGGCAACGTT chrVII:845490-845914 - 33 4.66e-11 GCGCAAGCCC GGAATCGAACCGGGGGCCCAACGA TGGCAACGTT chrVII:738772-739501 - 75 4.66e-11 GC GGGATCGAACCGCTGATCCCCGCG TTATTAGCAC chrV:443104-443335 + 44 4.66e-11 GGTCTCTAGC GGGATCGAACCGCTGATCCCCGCG TTATTAGCAC chrIX:183292-183670 + 20 4.66e-11 GGTCTCTAGC GGGATCGAACCGCTGATCCCCGCG TTATTAGCAC chrIV:83427-83803 - 19 4.66e-11 GCGCAAGCCC GGAATCGAACCGGGGGCCCAACGA TGGCAACGTT chrXVI:209986-210447 + 37 1.19e-10 TCCGATACGG GGAGTCGAACCCCGGTCTCCACGG TGAAAGCGTG chrXIII:290541-291099 - 68 1.19e-10 CCGATACGG GGAGTCGAACCCCGGTCTCCACGG TGAAAGCGTG chrXI:140790-141299 + 35 1.19e-10 TCCGATACGG GGAGTCGAACCCCGGTCTCCACGG TGAAAGCGTG chrVII:541715-542138 - 11 1.19e-10 TCCGATACGG GGAGTCGAACCCCGGTCTCCACGG TGAAAGCGTG chrII:644990-645443 - 38 1.19e-10 TCCGATACGG GGAGTCGAACCCCGGTCTCCACGG TGAAAGCGTG chrXIII:586492-586851 + 26 1.39e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrXIII:420346-420843 + 55 1.39e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrXIII:372200-372746 + 33 1.39e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrXI:379503-379916 - 60 1.39e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrX:378178-378574 - 73 1.39e-10 GCCC AGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrVII:823353-823674 - 58 1.39e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrVII:412061-412559 + 45 1.39e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrV:469269-469728 - 48 1.39e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrV:438534-438915 - 65 1.39e-10 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrXIII:195936-196295 + 14 1.61e-10 GGGCGAGCTG GGAATTGAACCCAGGGCCTCTCGC ATGCTTTGTC chrXII:214728-215067 + 47 1.61e-10 GGACGCAACC GGAATCGAACCGATGACCTCTTCC TTGCAAGGGA chrVIII:388677-389200 + 16 1.61e-10 GGGCGAGCTG GGAATTGAACCCAGGGCCTCTCGC ATGCTTTGTC chrVI:101371-101590 - 14 1.61e-10 GGGCGAGCTG GGAATTGAACCCAGGGCCTCTCGC ATGCTTTGTC chrV:311758-312270 + 70 1.61e-10 GGACGCAACC GGAATCGAACCGATGACCTCTTCC TTGCAAG chrVIII:475551-475911 + 36 2.15e-10 GTTCCAACCG AGGATCGAACTCGGGACCTTTGCC GTGTGAAGGC chrIV:1075332-1075704 + 15 2.15e-10 GTTCCAACCG AGGATCGAACTCGGGACCTTTGCC GTGTGAAGGC chrXVI:856799-857071 - 55 2.47e-10 GGACGAGTCC GGAATCGAACCGGAGACCTCTCCC ATGCTAAGGG chrX:197186-197519 + 22 2.47e-10 GGACGAGTCC GGAATCGAACCGGAGACCTCTCCC ATGCTAAGGG chrVII:774172-774584 - 59 2.47e-10 GGACGAGTCC GGAATCGAACCGGAGACCTCTCCC ATGCTAAGGG chrXIII:480434-480840 + 45 6.35e-10 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrVI:226515-226903 + 40 6.35e-10 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrV:435635-435931 + 30 6.35e-10 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrV:135214-135612 + 73 6.35e-10 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGA TTAA chrIX:299984-300522 + 36 6.35e-10 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrIII:151126-151560 + 2 6.35e-10 G GGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrIII:168102-168510 + 56 9.27e-10 GGTCCTACCC GGATTCGAACCGGGGTTGTCCGGA TCAAAACCGA chrII:326503-327191 + 6 9.27e-10 AACCG AGGTTCGAACTCGGGATCTTCGCC GTGTAAAGGC chrXI:46560-46979 + 27 1.05e-09 GCCCTCTGTG GGAATTGAACCCACGATCCCCGCA TTACGAGTGC chrXIII:747741-748138 + 14 1.34e-09 ACTCACGATG GGGGTCGAACCCATAATCTTCTGA TTAGAAGTCA chrXIII:131567-132200 + 3 1.34e-09 TG GGGGTCGAACCCATAATCTTCTGA TTAGAAGTCA chrX:374227-374874 + 17 1.34e-09 ACTCACGATG GGGGTCGAACCCATAATCTTCTGA TTAGAAGTCA chrII:405656-406185 - 45 1.34e-09 ACTCACGATG GGGGTCGAACCCATAATCTTCTGA TTAGAAGTCA chrXVI:768984-769447 + 53 2.99e-09 TCCTCATAGG GGGCTCGAACCCCTGACATTTCGG TATCCTTGCT chrXV:110844-111178 + 12 4.13e-09 GAGCGGTACG AGAATCGAACCCGTGTCCCCACCT TGGAAGGGTG chrXIV:96040-96460 + 52 4.13e-09 GAGCGGTACG AGAATCGAACCCGTGTCCCCACCT TGGAAGGGTG chrX:538526-538729 - 15 4.13e-09 GTTCCGTACG GGACTCGAACCCGCAGTCTTCTCC TTAGGAGGGA chrXVI:622321-622818 + 32 4.59e-09 GCGAATTCTG TGGATCGAACACAGGACCTCCAGA TAACTTGACC chrXVI:559989-560435 + 47 4.59e-09 GCGAATTCTG TGGATCGAACACAGGACCTCCAGA TAACTTGACC chrXIV:374731-375095 - 62 4.59e-09 GCGAACTCTG TGGATCGAACACAGGACCTCCAGA TGACTTGACC chrXIV:104629-105103 - 27 6.27e-09 GCTTCCAATC GGATTTGAACCGATGATCTCCACA TTACTAGTGT chrVIII:115958-116294 + 42 6.27e-09 GCTTCCAATC GGATTTGAACCGATGATCTCCACA TTACTAGTGT chrIX:325577-326049 - 23 6.27e-09 GCTTCCAATC GGATTTGAACCGATGATCTCCACA TTACTAGTGT chrX:422668-423231 - 76 1.37e-08 G AGGTTCGAACTCTCGACCTTCAGA TTATGAGACT chrX:390925-391242 + 21 1.37e-08 GCTCCAGGGG AGGTTCGAACTCTCGACCTTCAGA TTATGAGACT chrXV:288077-288390 - 63 2.80e-08 CTCCCGGGGG CGAGTCGAACGCCCGATCTCAAGA TTTCGTAGTG chrXIII:168692-168999 - 54 2.80e-08 CTCCCGGGGG CGAGTCGAACGCCCGATCTCAAGA TTTCGTAGTG chrX:542762-543245 + 14 2.80e-08 CTCCCGGGGG CGAGTCGAACGCCCGATCTCAAGA TTTCGTAGTG chrVI:167283-167705 - 47 2.80e-08 CTCCCGGGGG CGAGTCGAACGCCCGATCTCAAGA TTTCGTAGTG chrXVI:435652-436172 + 42 3.91e-08 GCTCGCACTC AGGATCGAACTAAGGACCAACAGA TTTGCAATCT chrXI:302742-303227 - 55 4.60e-08 GAAACGGACA GGAATTGAACCTGCAACCCTTCGA TTGCAATCTT chrXVI:810572-810886 - 36 5.39e-08 GACCCCAGTG AGGGTTGAACTCACGATCTTGCGA TTAACAGTCG chrXIV:632489-632852 - 18 5.39e-08 GACCCCAGTG AGGGTTGAACTCACGATCTTGCGA TTAACAGTCG chrVII:730967-731419 - 33 5.39e-08 GACCCCAGTG AGGGTTGAACTCACGATCTTGCGA TTAACAGTCG chrXV:340133-340569 + 9 5.83e-08 CCCCGCCA GGACTTGAACCTGGAATCTTCTGG TTCGTAGCCA chrXI:513220-513516 + 25 7.34e-08 TCCGCGACGG GGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrX:355218-355737 - 66 7.34e-08 TCCGCGACGG GGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrX:204554-204969 - 61 7.34e-08 TCCGCGACGG GGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrVII:544430-544832 + 7 7.34e-08 CGACGG GGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrVII:531452-531803 - 70 7.34e-08 GCGACGG GGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrIX:336130-336588 + 51 7.34e-08 TCCGCGACGG GGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrIX:324119-324533 + 38 7.34e-08 TCCGCGACGG GGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrXIII:362940-363313 - 25 7.91e-08 GCCATCTCCT AGAATCGAACCAGGGTTTCATCGG CCACAACGAT chrXI:313267-313594 + 32 7.91e-08 GCCATCTCCT AGAATCGAACCAGGGTTTCATCGG CCACAACGAT chrVIII:62619-63025 - 20 7.91e-08 GCCATCTCCT AGAATCGAACCAGGGTTTCATCGG CCACAACGAT chrXVI:744119-744523 - 50 1.61e-07 GCCACCTGTC AGAATTGAACTAACGACCTTTGCA TTACAAGTGC chrX:517678-518037 + 17 5.42e-07 AGCGCCGCTC GGTTTCGATCCGAGGACATCAGGG TTATGAGCCC chrIII:149717-150233 - 32 5.42e-07 AGCGCCGCTC GGTTTCGATCCGAGGACATCAGGG TTATGAGCCC chrXII:962623-963360 + 42 5.73e-07 GAAGGATGCG AGGTTCGAACTCGCGCGGACAACC GTCCAACAGA chrIV:519650-519900 - 67 5.73e-07 GAAGGATGCG AGGTTCGAACTCGCGCGGACAACC GTCCAACAGA chrII:347423-347931 - 25 5.73e-07 GAAGGATGCG AGGTTCGAACTCGCGCGGACAACC GTCCAACAGA chrII:9457-9853 - 27 5.73e-07 GAAGGATGCG AGGTTCGAACTCGCGCGGACAACC GTCCAACAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRATCGAACCSVKGACCTYMHSV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631730-632021 3.9e-14 31_[+1]_45 chrXVI:860207-860652 4.7e-11 35_[-1]_41 chrXVI:819344-819882 4.7e-11 4_[-1]_72 chrXV:281890-282547 4.7e-11 31_[-1]_45 chrXII:1051973-1052228 4.7e-11 31_[+1]_45 chrX:531619-532186 4.7e-11 11_[-1]_65 chrX:396576-396946 4.7e-11 25_[+1]_51 chrVII:930879-931145 4.7e-11 1_[+1]_75 chrVII:845490-845914 4.7e-11 32_[-1]_44 chrVII:738772-739501 4.7e-11 74_[-1]_2 chrV:443104-443335 4.7e-11 43_[+1]_33 chrIX:183292-183670 4.7e-11 19_[+1]_57 chrIV:83427-83803 4.7e-11 18_[-1]_58 chrXVI:209986-210447 1.2e-10 36_[+1]_40 chrXIII:290541-291099 1.2e-10 67_[-1]_9 chrXI:140790-141299 1.2e-10 34_[+1]_42 chrVII:541715-542138 1.2e-10 10_[-1]_66 chrII:644990-645443 1.2e-10 37_[-1]_39 chrXIII:586492-586851 1.4e-10 25_[+1]_51 chrXIII:420346-420843 1.4e-10 54_[+1]_22 chrXIII:372200-372746 1.4e-10 32_[+1]_44 chrXI:379503-379916 1.4e-10 59_[-1]_17 chrX:378178-378574 1.4e-10 72_[-1]_4 chrVII:823353-823674 1.4e-10 57_[-1]_19 chrVII:412061-412559 1.4e-10 44_[+1]_32 chrV:469269-469728 1.4e-10 47_[-1]_29 chrV:438534-438915 1.4e-10 64_[-1]_12 chrXIII:195936-196295 1.6e-10 13_[+1]_63 chrXII:214728-215067 1.6e-10 46_[+1]_30 chrVIII:388677-389200 1.6e-10 15_[+1]_61 chrVI:101371-101590 1.6e-10 13_[-1]_63 chrV:311758-312270 1.6e-10 69_[+1]_7 chrVIII:475551-475911 2.1e-10 35_[+1]_41 chrIV:1075332-1075704 2.1e-10 14_[+1]_62 chrXVI:856799-857071 2.5e-10 54_[-1]_22 chrX:197186-197519 2.5e-10 21_[+1]_55 chrVII:774172-774584 2.5e-10 58_[-1]_18 chrXIII:480434-480840 6.3e-10 44_[+1]_32 chrVI:226515-226903 6.3e-10 39_[+1]_37 chrV:435635-435931 6.3e-10 29_[+1]_47 chrV:135214-135612 6.3e-10 72_[+1]_4 chrIX:299984-300522 6.3e-10 35_[+1]_41 chrIII:151126-151560 6.3e-10 1_[+1]_75 chrIII:168102-168510 9.3e-10 55_[+1]_21 chrII:326503-327191 9.3e-10 5_[+1]_71 chrXI:46560-46979 1e-09 26_[+1]_50 chrXIII:747741-748138 1.3e-09 13_[+1]_63 chrXIII:131567-132200 1.3e-09 2_[+1]_74 chrX:374227-374874 1.3e-09 16_[+1]_60 chrII:405656-406185 1.3e-09 44_[-1]_32 chrXVI:768984-769447 3e-09 52_[+1]_24 chrXV:110844-111178 4.1e-09 11_[+1]_65 chrXIV:96040-96460 4.1e-09 51_[+1]_25 chrX:538526-538729 4.1e-09 14_[-1]_62 chrXVI:622321-622818 4.6e-09 31_[+1]_45 chrXVI:559989-560435 4.6e-09 46_[+1]_30 chrXIV:374731-375095 4.6e-09 61_[-1]_15 chrXIV:104629-105103 6.3e-09 26_[-1]_50 chrVIII:115958-116294 6.3e-09 41_[+1]_35 chrIX:325577-326049 6.3e-09 22_[-1]_54 chrX:422668-423231 1.4e-08 75_[-1]_1 chrX:390925-391242 1.4e-08 20_[+1]_56 chrXV:288077-288390 2.8e-08 62_[-1]_14 chrXIII:168692-168999 2.8e-08 53_[-1]_23 chrX:542762-543245 2.8e-08 13_[+1]_63 chrVI:167283-167705 2.8e-08 46_[-1]_30 chrXVI:435652-436172 3.9e-08 41_[+1]_35 chrXI:302742-303227 4.6e-08 54_[-1]_22 chrXVI:810572-810886 5.4e-08 35_[-1]_41 chrXIV:632489-632852 5.4e-08 17_[-1]_59 chrVII:730967-731419 5.4e-08 32_[-1]_44 chrXV:340133-340569 5.8e-08 8_[+1]_68 chrXI:513220-513516 7.3e-08 24_[+1]_52 chrX:355218-355737 7.3e-08 65_[-1]_11 chrX:204554-204969 7.3e-08 60_[-1]_16 chrVII:544430-544832 7.3e-08 6_[+1]_70 chrVII:531452-531803 7.3e-08 69_[-1]_7 chrIX:336130-336588 7.3e-08 50_[+1]_26 chrIX:324119-324533 7.3e-08 37_[+1]_39 chrXIII:362940-363313 7.9e-08 24_[-1]_52 chrXI:313267-313594 7.9e-08 31_[+1]_45 chrVIII:62619-63025 7.9e-08 19_[-1]_57 chrXVI:744119-744523 1.6e-07 49_[-1]_27 chrX:517678-518037 5.4e-07 16_[+1]_60 chrIII:149717-150233 5.4e-07 31_[-1]_45 chrXII:962623-963360 5.7e-07 41_[+1]_35 chrIV:519650-519900 5.7e-07 66_[-1]_10 chrII:347423-347931 5.7e-07 24_[-1]_52 chrII:9457-9853 5.7e-07 26_[-1]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRATCGAACCSVKGACCTYMHSV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGRATCGAACCSVKGACCTYMHSV width=24 seqs=89 chrXIV:631730-632021 ( 32) GGACTCGAACCCGGGACCTCCCGC 1 chrXVI:860207-860652 ( 36) GGAATCGAACCGGGGGCCCAACGA 1 chrXVI:819344-819882 ( 5) GGGATCGAACCGCTGATCCCCGCG 1 chrXV:281890-282547 ( 32) GGAATCGAACCGGGGGCCCAACGA 1 chrXII:1051973-1052228 ( 32) GGGATCGAACCGCTGATCCCCGCG 1 chrX:531619-532186 ( 12) GGAATCGAACCGGGGGCCCAACGA 1 chrX:396576-396946 ( 26) GGAATCGAACCGGGGGCCCAACGA 1 chrVII:930879-931145 ( 2) GGAATCGAACCGGGGGCCCAACGA 1 chrVII:845490-845914 ( 33) GGAATCGAACCGGGGGCCCAACGA 1 chrVII:738772-739501 ( 75) GGGATCGAACCGCTGATCCCCGCG 1 chrV:443104-443335 ( 44) GGGATCGAACCGCTGATCCCCGCG 1 chrIX:183292-183670 ( 20) GGGATCGAACCGCTGATCCCCGCG 1 chrIV:83427-83803 ( 19) GGAATCGAACCGGGGGCCCAACGA 1 chrXVI:209986-210447 ( 37) GGAGTCGAACCCCGGTCTCCACGG 1 chrXIII:290541-291099 ( 68) GGAGTCGAACCCCGGTCTCCACGG 1 chrXI:140790-141299 ( 35) GGAGTCGAACCCCGGTCTCCACGG 1 chrVII:541715-542138 ( 11) GGAGTCGAACCCCGGTCTCCACGG 1 chrII:644990-645443 ( 38) GGAGTCGAACCCCGGTCTCCACGG 1 chrXIII:586492-586851 ( 26) AGGATCGAACTGGGGACGTTCTGC 1 chrXIII:420346-420843 ( 55) AGGATCGAACTGGGGACGTTCTGC 1 chrXIII:372200-372746 ( 33) AGGATCGAACTGGGGACGTTCTGC 1 chrXI:379503-379916 ( 60) AGGATCGAACTGGGGACGTTCTGC 1 chrX:378178-378574 ( 73) AGGATCGAACTGGGGACGTTCTGC 1 chrVII:823353-823674 ( 58) AGGATCGAACTGGGGACGTTCTGC 1 chrVII:412061-412559 ( 45) AGGATCGAACTGGGGACGTTCTGC 1 chrV:469269-469728 ( 48) AGGATCGAACTGGGGACGTTCTGC 1 chrV:438534-438915 ( 65) AGGATCGAACTGGGGACGTTCTGC 1 chrXIII:195936-196295 ( 14) GGAATTGAACCCAGGGCCTCTCGC 1 chrXII:214728-215067 ( 47) GGAATCGAACCGATGACCTCTTCC 1 chrVIII:388677-389200 ( 16) GGAATTGAACCCAGGGCCTCTCGC 1 chrVI:101371-101590 ( 14) GGAATTGAACCCAGGGCCTCTCGC 1 chrV:311758-312270 ( 70) GGAATCGAACCGATGACCTCTTCC 1 chrVIII:475551-475911 ( 36) AGGATCGAACTCGGGACCTTTGCC 1 chrIV:1075332-1075704 ( 15) AGGATCGAACTCGGGACCTTTGCC 1 chrXVI:856799-857071 ( 55) GGAATCGAACCGGAGACCTCTCCC 1 chrX:197186-197519 ( 22) GGAATCGAACCGGAGACCTCTCCC 1 chrVII:774172-774584 ( 59) GGAATCGAACCGGAGACCTCTCCC 1 chrXIII:480434-480840 ( 45) GGGCTCGAACCCCTAACCTTATGA 1 chrVI:226515-226903 ( 40) GGGCTCGAACCCCTAACCTTATGA 1 chrV:435635-435931 ( 30) GGGCTCGAACCCCTAACCTTATGA 1 chrV:135214-135612 ( 73) GGGCTCGAACCCCTAACCTTATGA 1 chrIX:299984-300522 ( 36) GGGCTCGAACCCCTAACCTTATGA 1 chrIII:151126-151560 ( 2) GGGCTCGAACCCCTAACCTTATGA 1 chrIII:168102-168510 ( 56) GGATTCGAACCGGGGTTGTCCGGA 1 chrII:326503-327191 ( 6) AGGTTCGAACTCGGGATCTTCGCC 1 chrXI:46560-46979 ( 27) GGAATTGAACCCACGATCCCCGCA 1 chrXIII:747741-748138 ( 14) GGGGTCGAACCCATAATCTTCTGA 1 chrXIII:131567-132200 ( 3) GGGGTCGAACCCATAATCTTCTGA 1 chrX:374227-374874 ( 17) GGGGTCGAACCCATAATCTTCTGA 1 chrII:405656-406185 ( 45) GGGGTCGAACCCATAATCTTCTGA 1 chrXVI:768984-769447 ( 53) GGGCTCGAACCCCTGACATTTCGG 1 chrXV:110844-111178 ( 12) AGAATCGAACCCGTGTCCCCACCT 1 chrXIV:96040-96460 ( 52) AGAATCGAACCCGTGTCCCCACCT 1 chrX:538526-538729 ( 15) GGACTCGAACCCGCAGTCTTCTCC 1 chrXVI:622321-622818 ( 32) TGGATCGAACACAGGACCTCCAGA 1 chrXVI:559989-560435 ( 47) TGGATCGAACACAGGACCTCCAGA 1 chrXIV:374731-375095 ( 62) TGGATCGAACACAGGACCTCCAGA 1 chrXIV:104629-105103 ( 27) GGATTTGAACCGATGATCTCCACA 1 chrVIII:115958-116294 ( 42) GGATTTGAACCGATGATCTCCACA 1 chrIX:325577-326049 ( 23) GGATTTGAACCGATGATCTCCACA 1 chrX:422668-423231 ( 76) AGGTTCGAACTCTCGACCTTCAGA 1 chrX:390925-391242 ( 21) AGGTTCGAACTCTCGACCTTCAGA 1 chrXV:288077-288390 ( 63) CGAGTCGAACGCCCGATCTCAAGA 1 chrXIII:168692-168999 ( 54) CGAGTCGAACGCCCGATCTCAAGA 1 chrX:542762-543245 ( 14) CGAGTCGAACGCCCGATCTCAAGA 1 chrVI:167283-167705 ( 47) CGAGTCGAACGCCCGATCTCAAGA 1 chrXVI:435652-436172 ( 42) AGGATCGAACTAAGGACCAACAGA 1 chrXI:302742-303227 ( 55) GGAATTGAACCTGCAACCCTTCGA 1 chrXVI:810572-810886 ( 36) AGGGTTGAACTCACGATCTTGCGA 1 chrXIV:632489-632852 ( 18) AGGGTTGAACTCACGATCTTGCGA 1 chrVII:730967-731419 ( 33) AGGGTTGAACTCACGATCTTGCGA 1 chrXV:340133-340569 ( 9) GGACTTGAACCTGGAATCTTCTGG 1 chrXI:513220-513516 ( 25) GGAATTGAACCCCGATCTGGCACG 1 chrX:355218-355737 ( 66) GGAATTGAACCCCGATCTGGCACG 1 chrX:204554-204969 ( 61) GGAATTGAACCCCGATCTGGCACG 1 chrVII:544430-544832 ( 7) GGAATTGAACCCCGATCTGGCACG 1 chrVII:531452-531803 ( 70) GGAATTGAACCCCGATCTGGCACG 1 chrIX:336130-336588 ( 51) GGAATTGAACCCCGATCTGGCACG 1 chrIX:324119-324533 ( 38) GGAATTGAACCCCGATCTGGCACG 1 chrXIII:362940-363313 ( 25) AGAATCGAACCAGGGTTTCATCGG 1 chrXI:313267-313594 ( 32) AGAATCGAACCAGGGTTTCATCGG 1 chrVIII:62619-63025 ( 20) AGAATCGAACCAGGGTTTCATCGG 1 chrXVI:744119-744523 ( 50) AGAATTGAACTAACGACCTTTGCA 1 chrX:517678-518037 ( 17) GGTTTCGATCCGAGGACATCAGGG 1 chrIII:149717-150233 ( 32) GGTTTCGATCCGAGGACATCAGGG 1 chrXII:962623-963360 ( 42) AGGTTCGAACTCGCGCGGACAACC 1 chrIV:519650-519900 ( 67) AGGTTCGAACTCGCGCGGACAACC 1 chrII:347423-347931 ( 25) AGGTTCGAACTCGCGCGGACAACC 1 chrII:9457-9853 ( 27) AGGTTCGAACTCGCGCGGACAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRATCGAACCSVKGACCTYMHSV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 43274 bayes= 8.48791 E= 4.8e-311 1 -206 169 -321 -1312 -1312 241 -1312 73 -1312 129 -379 85 -74 -6 -110 -1312 -1312 -1312 168 -1312 204 -1312 -47 -1312 -1312 241 -1312 168 -1312 -1312 -1312 165 -1312 -1312 -379 -1312 241 -1312 -1312 -321 182 -206 -27 -247 158 94 -379 -27 74 111 -379 -321 2 146 -27 -47 -1312 204 -1312 101 -206 -60 -63 -1312 179 -206 -4 -321 177 -26 -89 -247 52 -126 93 -134 122 -126 20 11 126 -248 -80 -21 79 -36 -27 -1312 94 177 -1312 41 64 52 -379 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRATCGAACCSVKGACCTYMHSV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 89 E= 4.8e-311 0.314607 0.044944 0.606742 0.033708 0.000000 0.000000 1.000000 0.000000 0.516854 0.000000 0.460674 0.022472 0.561798 0.112360 0.179775 0.146067 0.000000 0.000000 0.000000 1.000000 0.000000 0.775281 0.000000 0.224719 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.977528 0.000000 0.000000 0.022472 0.000000 1.000000 0.000000 0.000000 0.033708 0.662921 0.044944 0.258427 0.056180 0.561798 0.359551 0.022472 0.258427 0.314607 0.404494 0.022472 0.033708 0.191011 0.516854 0.258427 0.224719 0.000000 0.775281 0.000000 0.629213 0.044944 0.123596 0.202247 0.000000 0.651685 0.044944 0.303371 0.033708 0.640449 0.157303 0.168539 0.056180 0.269663 0.078652 0.595506 0.123596 0.438202 0.078652 0.359551 0.337079 0.449438 0.033708 0.179775 0.269663 0.325843 0.146067 0.258427 0.000000 0.359551 0.640449 0.000000 0.415730 0.292135 0.269663 0.022472 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRATCGAACCSVKGACCTYMHSV MEME-1 regular expression -------------------------------------------------------------------------------- [GA]G[AG]AT[CT]GAAC[CT][CG][GCA][GT][GA][AT][CT]C[TC][CT][CA][CAT][GC][ACG] -------------------------------------------------------------------------------- Time 309.69 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCCYAGTBGKTWRAGSSHH MEME-2 width = 21 sites = 82 llr = 1273 E-value = 1.6e-213 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCCYAGTBGKTWRAGSSHH MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:::2a1::::25661::42 pos.-specific C :::763:::2::1::1:5634 probability G :8a:21:9:4a61:3174411 matrix T a::324::a4:4751121:23 bits 2.4 * * 2.2 * * 1.9 * * * 1.7 * * ** * Relative 1.4 *** *** * * Entropy 1.2 **** *** ** * * (22.4 bits) 1.0 ***** *** ** *** 0.7 ***** *** ** * *** 0.5 ***** ********* *** 0.2 ***** ************* * 0.0 --------------------- Multilevel TGGCCTAGTGGGTAAAGCCAC consensus TTC T T TG GGCT sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCYAGTBGKTWRAGSSHH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:602090-602554 + 47 4.21e-12 AATGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrXII:1051973-1052228 - 67 4.21e-12 CATGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrXII:734626-734934 + 79 4.21e-12 TTTGGTCTCT TGGCCCAGTTGGTTAAGGCAC C chrVII:738772-739501 + 43 4.21e-12 ATAGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrV:551066-551643 - 27 4.21e-12 ACAGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrV:443104-443335 - 79 4.21e-12 T TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrIX:183292-183670 - 55 4.21e-12 CCTGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrII:197171-197803 + 64 4.21e-12 CAAGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrXV:353934-354285 - 27 4.82e-10 ACTGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrVIII:115958-116294 - 76 4.82e-10 TCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrIX:174691-175380 + 53 4.82e-10 CGAGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrXVI:810572-810886 + 4 5.79e-10 CCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrXV:228008-228622 + 73 5.79e-10 TTAGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTG chrXI:74470-74785 + 54 5.79e-10 TTAGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrVII:730967-731419 + 1 5.79e-10 . TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrVI:137276-137817 - 36 5.79e-10 ACTGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrIII:127560-127866 + 60 5.79e-10 AATGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrXVI:689388-689843 + 7 8.18e-10 GCACTA TGGCCGAGTGGTTAAGGCGAC AGACTTGAAA chrXII:732005-732278 + 6 8.18e-10 GAGTT TGGCCGAGTGGTTTAAGGCGT CAGATTTAGG chrIV:1150701-1151145 - 41 2.48e-09 TCAGTCCCAG TGGCCGAGTGGTTAAGGCGAT GCCTGCTATT chrXVI:856799-857071 + 24 3.32e-09 TTCGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrXII:656846-657164 - 24 3.32e-09 ATTGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrX:197186-197519 - 56 3.32e-09 TTAGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrVIII:145922-146745 - 4 3.32e-09 TCAGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCC chrVII:774172-774584 + 28 3.32e-09 ATTGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrXIII:259033-259442 - 25 4.39e-09 TATGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrXII:167757-168199 - 70 4.39e-09 TATGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrVIII:132824-133353 - 42 4.39e-09 AGTGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrV:86432-86780 + 55 4.39e-09 TATGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrXIII:586492-586851 - 61 5.04e-09 TATGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrXIII:372200-372746 - 68 5.04e-09 CCTGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrXI:379503-379916 + 28 5.04e-09 ATAGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrXI:307964-308454 - 31 5.04e-09 AGTGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrX:378178-378574 + 41 5.04e-09 ATAGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrVII:823353-823674 + 26 5.04e-09 AGTGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrVII:412061-412559 - 80 5.04e-09 . TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrV:469269-469728 + 16 5.04e-09 ATTGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrV:438534-438915 + 33 5.04e-09 TTAGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrIII:227794-228180 + 12 5.04e-09 AATGGCACTA TGGCCGAGTGGTTAAGGCGAG AGACTCGAAT chrXI:84036-84409 + 43 1.76e-08 TATGGAGGGT TGGCCGAGTGGTCTAAGGCGG CAGACTTAAG chrX:424309-424706 - 31 1.76e-08 GATGGAGGGT TGGCCGAGTGGTCTAAGGCGG CAGACTTAAG chrIV:519650-519900 + 25 1.76e-08 TACGGAGGGT TGGCCGAGTGGTCTAAGGCGG CAGACTTAAG chrVII:115318-115702 + 35 1.98e-08 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTT CGGCTTTTAA chrXIV:374731-375095 + 13 2.47e-08 TAAGCGGACT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrXIII:352111-352433 + 65 2.47e-08 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrVIII:358337-358758 - 45 2.47e-08 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrVIII:237759-238077 - 44 2.47e-08 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrIV:1095181-1095717 - 35 2.47e-08 TTAGCGGACT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrII:36249-36590 + 36 2.47e-08 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrXIII:480434-480840 - 79 1.57e-07 T TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrVI:226515-226903 - 74 1.57e-07 CCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrV:435635-435931 - 64 1.57e-07 AGAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrIX:299984-300522 - 70 1.57e-07 ATAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrIII:151126-151560 - 36 1.57e-07 AGAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrXV:464303-464649 + 31 1.86e-07 CAAGGGCGTG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrXIII:195936-196295 - 78 1.86e-07 TG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrXII:92425-92726 + 30 1.86e-07 TAAGGGCGTG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrVIII:388677-389200 - 80 1.86e-07 . TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrVII:422742-423426 + 65 1.86e-07 AGTGGTTGTT TGGCCGAGCGGTCTAAGGCGC CTGATTCAAG chrI:138998-139341 + 40 1.86e-07 TACGGGCGTG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrXVI:860207-860652 + 7 2.38e-07 CGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrXV:281890-282547 + 3 2.38e-07 AG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrXV:226591-226808 - 5 2.38e-07 TCAGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTT chrX:396576-396946 - 58 2.38e-07 TAAGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrVII:930879-931145 - 34 2.38e-07 TAAGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrVII:845490-845914 + 4 2.38e-07 AAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrVI:162053-162380 + 69 2.38e-07 CAAGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrX:422668-423231 + 45 3.27e-07 TATGCTTCAG TAGCTCAGTAGGAAGAGCGTC AGTCTCATAA chrX:390925-391242 - 55 3.27e-07 AGTGCTTCAG TAGCTCAGTAGGAAGAGCGTC AGTCTCATAA chrXII:605241-605598 - 36 5.10e-07 AATGCTCGTG TAGCTCAGTGGTTAGAGCTTC GTGCTTATAG chrXV:288077-288390 + 16 6.75e-07 CTTCTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrXIII:837725-838180 + 33 6.75e-07 TGACTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrXIII:168692-168999 + 7 6.75e-07 TCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrX:542762-543245 - 64 6.75e-07 ATACTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrVI:210490-210932 - 19 6.75e-07 CGACTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrII:326503-327191 - 41 1.14e-06 CCGGGTCCAA TGGTCCAGTGGTTCAAGACGT CGCCTTTACA chrXV:340133-340569 - 43 1.37e-06 CTGTTCCTCG TGGCCCAATGGTCACGGCGTC TGGCTACGAA chrV:78098-79415 + 15 1.37e-06 GGTCCATCGA TGGTGTCGTCGGTAGAACCTT GTACAAGAAC chrXIV:631730-632021 - 65 2.07e-06 ACCGGGCGTG TGGTCTAGAGGTATGATTCTC GCTTAGGGTG chrIII:123495-123784 - 32 2.07e-06 GGAGGGCGTG TGGTCTAGAGGTATGATTCTC GCTTAGGGTG chrX:233192-234108 - 33 3.02e-06 CTTAGCTTAT TGGTGTAGGTGGTAATTTCCC TTAGTGGCAC chrXV:110844-111178 - 45 4.52e-06 CCCGGGCGGT TAGTGTAGTGGTTATCATCCC ACCCTTCCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCYAGTBGKTWRAGSSHH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602090-602554 4.2e-12 46_[+2]_33 chrXII:1051973-1052228 4.2e-12 66_[-2]_13 chrXII:734626-734934 4.2e-12 78_[+2]_1 chrVII:738772-739501 4.2e-12 42_[+2]_37 chrV:551066-551643 4.2e-12 26_[-2]_53 chrV:443104-443335 4.2e-12 78_[-2]_1 chrIX:183292-183670 4.2e-12 54_[-2]_25 chrII:197171-197803 4.2e-12 63_[+2]_16 chrXV:353934-354285 4.8e-10 26_[-2]_53 chrVIII:115958-116294 4.8e-10 75_[-2]_4 chrIX:174691-175380 4.8e-10 52_[+2]_27 chrXVI:810572-810886 5.8e-10 3_[+2]_76 chrXV:228008-228622 5.8e-10 72_[+2]_7 chrXI:74470-74785 5.8e-10 53_[+2]_26 chrVII:730967-731419 5.8e-10 [+2]_79 chrVI:137276-137817 5.8e-10 35_[-2]_44 chrIII:127560-127866 5.8e-10 59_[+2]_20 chrXVI:689388-689843 8.2e-10 6_[+2]_73 chrXII:732005-732278 8.2e-10 5_[+2]_74 chrIV:1150701-1151145 2.5e-09 40_[-2]_39 chrXVI:856799-857071 3.3e-09 23_[+2]_56 chrXII:656846-657164 3.3e-09 23_[-2]_56 chrX:197186-197519 3.3e-09 55_[-2]_24 chrVIII:145922-146745 3.3e-09 3_[-2]_76 chrVII:774172-774584 3.3e-09 27_[+2]_52 chrXIII:259033-259442 4.4e-09 24_[-2]_55 chrXII:167757-168199 4.4e-09 69_[-2]_10 chrVIII:132824-133353 4.4e-09 41_[-2]_38 chrV:86432-86780 4.4e-09 54_[+2]_25 chrXIII:586492-586851 5e-09 60_[-2]_19 chrXIII:372200-372746 5e-09 67_[-2]_12 chrXI:379503-379916 5e-09 27_[+2]_52 chrXI:307964-308454 5e-09 30_[-2]_49 chrX:378178-378574 5e-09 40_[+2]_39 chrVII:823353-823674 5e-09 25_[+2]_54 chrVII:412061-412559 5e-09 79_[-2] chrV:469269-469728 5e-09 15_[+2]_64 chrV:438534-438915 5e-09 32_[+2]_47 chrIII:227794-228180 5e-09 11_[+2]_68 chrXI:84036-84409 1.8e-08 42_[+2]_37 chrX:424309-424706 1.8e-08 30_[-2]_49 chrIV:519650-519900 1.8e-08 24_[+2]_55 chrVII:115318-115702 2e-08 34_[+2]_45 chrXIV:374731-375095 2.5e-08 12_[+2]_67 chrXIII:352111-352433 2.5e-08 64_[+2]_15 chrVIII:358337-358758 2.5e-08 44_[-2]_35 chrVIII:237759-238077 2.5e-08 43_[-2]_36 chrIV:1095181-1095717 2.5e-08 34_[-2]_45 chrII:36249-36590 2.5e-08 35_[+2]_44 chrXIII:480434-480840 1.6e-07 78_[-2]_1 chrVI:226515-226903 1.6e-07 73_[-2]_6 chrV:435635-435931 1.6e-07 63_[-2]_16 chrIX:299984-300522 1.6e-07 69_[-2]_10 chrIII:151126-151560 1.6e-07 35_[-2]_44 chrXV:464303-464649 1.9e-07 30_[+2]_49 chrXIII:195936-196295 1.9e-07 77_[-2]_2 chrXII:92425-92726 1.9e-07 29_[+2]_50 chrVIII:388677-389200 1.9e-07 79_[-2] chrVII:422742-423426 1.9e-07 64_[+2]_15 chrI:138998-139341 1.9e-07 39_[+2]_40 chrXVI:860207-860652 2.4e-07 6_[+2]_73 chrXV:281890-282547 2.4e-07 2_[+2]_77 chrXV:226591-226808 2.4e-07 4_[-2]_75 chrX:396576-396946 2.4e-07 57_[-2]_22 chrVII:930879-931145 2.4e-07 33_[-2]_46 chrVII:845490-845914 2.4e-07 3_[+2]_76 chrVI:162053-162380 2.4e-07 68_[+2]_11 chrX:422668-423231 3.3e-07 44_[+2]_35 chrX:390925-391242 3.3e-07 54_[-2]_25 chrXII:605241-605598 5.1e-07 35_[-2]_44 chrXV:288077-288390 6.7e-07 15_[+2]_64 chrXIII:837725-838180 6.7e-07 32_[+2]_47 chrXIII:168692-168999 6.7e-07 6_[+2]_73 chrX:542762-543245 6.7e-07 63_[-2]_16 chrVI:210490-210932 6.7e-07 18_[-2]_61 chrII:326503-327191 1.1e-06 40_[-2]_39 chrXV:340133-340569 1.4e-06 42_[-2]_37 chrV:78098-79415 1.4e-06 14_[+2]_65 chrXIV:631730-632021 2.1e-06 64_[-2]_15 chrIII:123495-123784 2.1e-06 31_[-2]_48 chrX:233192-234108 3e-06 32_[-2]_47 chrXV:110844-111178 4.5e-06 44_[-2]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCYAGTBGKTWRAGSSHH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCCYAGTBGKTWRAGSSHH width=21 seqs=82 chrXIV:602090-602554 ( 47) TGGCCCAGTTGGTTAAGGCAC 1 chrXII:1051973-1052228 ( 67) TGGCCCAGTTGGTTAAGGCAC 1 chrXII:734626-734934 ( 79) TGGCCCAGTTGGTTAAGGCAC 1 chrVII:738772-739501 ( 43) TGGCCCAGTTGGTTAAGGCAC 1 chrV:551066-551643 ( 27) TGGCCCAGTTGGTTAAGGCAC 1 chrV:443104-443335 ( 79) TGGCCCAGTTGGTTAAGGCAC 1 chrIX:183292-183670 ( 55) TGGCCCAGTTGGTTAAGGCAC 1 chrII:197171-197803 ( 64) TGGCCCAGTTGGTTAAGGCAC 1 chrXV:353934-354285 ( 27) TGGCCAAGTTGGTAAGGCGCC 1 chrVIII:115958-116294 ( 76) TGGCCAAGTTGGTAAGGCGCC 1 chrIX:174691-175380 ( 53) TGGCCAAGTTGGTAAGGCGCC 1 chrXVI:810572-810886 ( 4) TGGCCAAGTTGGTTAAGGCGT 1 chrXV:228008-228622 ( 73) TGGCCAAGTTGGTTAAGGCGT 1 chrXI:74470-74785 ( 54) TGGCCAAGTTGGTTAAGGCGT 1 chrVII:730967-731419 ( 1) TGGCCAAGTTGGTTAAGGCGT 1 chrVI:137276-137817 ( 36) TGGCCAAGTTGGTTAAGGCGT 1 chrIII:127560-127866 ( 60) TGGCCAAGTTGGTTAAGGCGT 1 chrXVI:689388-689843 ( 7) TGGCCGAGTGGTTAAGGCGAC 1 chrXII:732005-732278 ( 6) TGGCCGAGTGGTTTAAGGCGT 1 chrIV:1150701-1151145 ( 41) TGGCCGAGTGGTTAAGGCGAT 1 chrXVI:856799-857071 ( 24) TGGCGTAGTCGGTAGCGCGCT 1 chrXII:656846-657164 ( 24) TGGCGTAGTCGGTAGCGCGCT 1 chrX:197186-197519 ( 56) TGGCGTAGTCGGTAGCGCGCT 1 chrVIII:145922-146745 ( 4) TGGCGTAGTCGGTAGCGCGCT 1 chrVII:774172-774584 ( 28) TGGCGTAGTCGGTAGCGCGCT 1 chrXIII:259033-259442 ( 25) TGGCCGAGTGGTTAAGGCGAA 1 chrXII:167757-168199 ( 70) TGGCCGAGTGGTTAAGGCGAA 1 chrVIII:132824-133353 ( 42) TGGCCGAGTGGTTAAGGCGAA 1 chrV:86432-86780 ( 55) TGGCCGAGTGGTTAAGGCGAA 1 chrXIII:586492-586851 ( 61) TGGTCTAGTCGGTTATGGCAT 1 chrXIII:372200-372746 ( 68) TGGTCTAGTCGGTTATGGCAT 1 chrXI:379503-379916 ( 28) TGGTCTAGTCGGTTATGGCAT 1 chrXI:307964-308454 ( 31) TGGTCTAGTCGGTTATGGCAT 1 chrX:378178-378574 ( 41) TGGTCTAGTCGGTTATGGCAT 1 chrVII:823353-823674 ( 26) TGGTCTAGTCGGTTATGGCAT 1 chrVII:412061-412559 ( 80) TGGTCTAGTCGGTTATGGCAT 1 chrV:469269-469728 ( 16) TGGTCTAGTCGGTTATGGCAT 1 chrV:438534-438915 ( 33) TGGTCTAGTCGGTTATGGCAT 1 chrIII:227794-228180 ( 12) TGGCCGAGTGGTTAAGGCGAG 1 chrXI:84036-84409 ( 43) TGGCCGAGTGGTCTAAGGCGG 1 chrX:424309-424706 ( 31) TGGCCGAGTGGTCTAAGGCGG 1 chrIV:519650-519900 ( 25) TGGCCGAGTGGTCTAAGGCGG 1 chrVII:115318-115702 ( 35) TAGCTCAGTTGGTAGAGCGTT 1 chrXIV:374731-375095 ( 13) TAGCTCAGTTGGGAGAGCGCC 1 chrXIII:352111-352433 ( 65) TAGCTCAGTTGGGAGAGCGCC 1 chrVIII:358337-358758 ( 45) TAGCTCAGTTGGGAGAGCGCC 1 chrVIII:237759-238077 ( 44) TAGCTCAGTTGGGAGAGCGCC 1 chrIV:1095181-1095717 ( 35) TAGCTCAGTTGGGAGAGCGCC 1 chrII:36249-36590 ( 36) TAGCTCAGTTGGGAGAGCGCC 1 chrXIII:480434-480840 ( 79) TGGCGCAATCGGTAGCGCGTA 1 chrVI:226515-226903 ( 74) TGGCGCAATCGGTAGCGCGTA 1 chrV:435635-435931 ( 64) TGGCGCAATCGGTAGCGCGTA 1 chrIX:299984-300522 ( 70) TGGCGCAATCGGTAGCGCGTA 1 chrIII:151126-151560 ( 36) TGGCGCAATCGGTAGCGCGTA 1 chrXV:464303-464649 ( 31) TGGTCTAGTGGTATGATTCTC 1 chrXIII:195936-196295 ( 78) TGGTCTAGTGGTATGATTCTC 1 chrXII:92425-92726 ( 30) TGGTCTAGTGGTATGATTCTC 1 chrVIII:388677-389200 ( 80) TGGTCTAGTGGTATGATTCTC 1 chrVII:422742-423426 ( 65) TGGCCGAGCGGTCTAAGGCGC 1 chrI:138998-139341 ( 40) TGGTCTAGTGGTATGATTCTC 1 chrXVI:860207-860652 ( 7) TGGTTTAGTGGTAAAATCCAA 1 chrXV:281890-282547 ( 3) TGGTTTAGTGGTAAAATCCAA 1 chrXV:226591-226808 ( 5) TGGTTTAGTGGTAAAATCCAA 1 chrX:396576-396946 ( 58) TGGTTTAGTGGTAAAATCCAA 1 chrVII:930879-931145 ( 34) TGGTTTAGTGGTAAAATCCAA 1 chrVII:845490-845914 ( 4) TGGTTTAGTGGTAAAATCCAA 1 chrVI:162053-162380 ( 69) TGGTTTAGTGGTAAAATCCAA 1 chrX:422668-423231 ( 45) TAGCTCAGTAGGAAGAGCGTC 1 chrX:390925-391242 ( 55) TAGCTCAGTAGGAAGAGCGTC 1 chrXII:605241-605598 ( 36) TAGCTCAGTGGTTAGAGCTTC 1 chrXV:288077-288390 ( 16) TAGCCAAGTTGGTTTAAGGCG 1 chrXIII:837725-838180 ( 33) TAGCCAAGTTGGTTTAAGGCG 1 chrXIII:168692-168999 ( 7) TAGCCAAGTTGGTTTAAGGCG 1 chrX:542762-543245 ( 64) TAGCCAAGTTGGTTTAAGGCG 1 chrVI:210490-210932 ( 19) TAGCCAAGTTGGTTTAAGGCG 1 chrII:326503-327191 ( 41) TGGTCCAGTGGTTCAAGACGT 1 chrXV:340133-340569 ( 43) TGGCCCAATGGTCACGGCGTC 1 chrV:78098-79415 ( 15) TGGTGTCGTCGGTAGAACCTT 1 chrXIV:631730-632021 ( 65) TGGTCTAGAGGTATGATTCTC 1 chrIII:123495-123784 ( 32) TGGTCTAGAGGTATGATTCTC 1 chrX:233192-234108 ( 33) TGGTGTAGGTGGTAATTTCCC 1 chrXV:110844-111178 ( 45) TAGTGTAGTGGTTATCATCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCYAGTBGKTWRAGSSHH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 44960 bayes= 10.0627 E= 1.6e-213 -1300 -1300 -1300 168 -68 -1300 210 -1300 -1300 -1300 241 -1300 -1300 184 -1300 8 -1300 175 -25 -59 -87 70 -36 28 166 -394 -1300 -1300 -209 -1300 230 -1300 -368 -394 -394 161 -368 38 96 23 -1300 -1300 241 -1300 -1300 -1300 175 23 -68 -162 -136 110 68 -394 -1300 64 88 -394 86 -209 97 -49 -49 -136 -187 -1300 196 -77 -467 134 110 -151 -1300 158 118 -467 28 45 -36 -51 -68 105 -78 -3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCYAGTBGKTWRAGSSHH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 82 E= 1.6e-213 0.000000 0.000000 0.000000 1.000000 0.195122 0.000000 0.804878 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.670732 0.000000 0.329268 0.000000 0.634146 0.158537 0.207317 0.170732 0.304878 0.146341 0.378049 0.987805 0.012195 0.000000 0.000000 0.073171 0.000000 0.926829 0.000000 0.024390 0.012195 0.012195 0.951220 0.024390 0.243902 0.365854 0.365854 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.634146 0.365854 0.195122 0.060976 0.073171 0.670732 0.500000 0.012195 0.000000 0.487805 0.573171 0.012195 0.341463 0.073171 0.609756 0.134146 0.134146 0.121951 0.085366 0.000000 0.731707 0.182927 0.012195 0.475610 0.402439 0.109756 0.000000 0.560976 0.426829 0.012195 0.378049 0.256098 0.146341 0.219512 0.195122 0.390244 0.109756 0.304878 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCYAGTBGKTWRAGSSHH MEME-2 regular expression -------------------------------------------------------------------------------- TGG[CT][CT][TC]AGT[GTC]G[GT]T[AT][AG]AG[CG][CG][ACT][CT] -------------------------------------------------------------------------------- Time 585.11 secs. ******************************************************************************** ******************************************************************************** MOTIF BATAGYKTAATGGYHAKVMBDTBVVSTTBT MEME-3 width = 30 sites = 29 llr = 632 E-value = 6.9e-095 ******************************************************************************** -------------------------------------------------------------------------------- Motif BATAGYKTAATGGYHAKVMBDTBVVSTTBT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 16:8::::a7::::38227:2::23::::1 pos.-specific C 3::::3:1::3::52:2434:23437214: probability G 33:2a:6::3:aa::223:3323333::3: matrix T 31a::749::7::54:4::3463:::8939 bits 2.4 * ** 2.2 * ** 1.9 * ** 1.7 * * * ** Relative 1.4 * * ** ** * * Entropy 1.2 * * *** ** * *** * (31.5 bits) 1.0 ************ * * *** * 0.7 ************* * *** * ***** 0.5 ************* * ************* 0.2 **************** ************* 0.0 ------------------------------ Multilevel TATAGTGTAATGGTTATCACTTGCACTTCT consensus GG G CT GC CA GGCTGGTGGGC G sequence C C A GA CAC T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BATAGYKTAATGGYHAKVMBDTBVVSTTBT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIII:808141-808497 - 14 8.11e-13 AAAAAGGTCC TATAGTGTAGTGGTTATCACTTTCGGTTCT GATCCGAACA chrXII:448508-448960 - 3 5.21e-12 GTTCCGGTCC TATAGTGTAGTGGTTATCACTTTCGGTTTT GA chrV:130991-131325 - 11 5.21e-12 TAAGAGGTTT TATAGTGTAGTGGTTATCACTTTCGGTTTT GATCCGAACA chrXII:426837-427438 + 50 8.70e-12 TCTTATCCGT GATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrXI:513220-513516 - 51 8.70e-12 AACGTTCCGT GATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrX:355218-355737 + 34 8.70e-12 TTTCTTCCGT GATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrX:204554-204969 + 29 8.70e-12 AAAAATCCGT GATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrVII:544430-544832 - 33 8.70e-12 TTTCTTCCGT GATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrVII:531452-531803 + 38 8.70e-12 TTACTTCCGT GATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrIX:324119-324533 - 64 8.70e-12 ATTCCGT GATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrIV:1016930-1017656 - 1 1.02e-11 TACAATCCGA TGTAGTGTAACGGCTATCACATCACGTTCT chrXIII:747741-748138 - 40 3.60e-11 GACTAGCTCG CGTGGCGTAATGGCAACGCGTCTGACTTCT AATCAGAAGA chrXIII:131567-132200 - 29 3.60e-11 ATTTAGCTCG CGTGGCGTAATGGCAACGCGTCTGACTTCT AATCAGAAGA chrXI:162433-162667 - 24 3.60e-11 TATTAGCTCG CGTGGCGTAATGGCAACGCGTCTGACTTCT AATCAGAAGA chrX:374227-374874 - 43 3.60e-11 TAGTAGCTCG CGTGGCGTAATGGCAACGCGTCTGACTTCT AATCAGAAGA chrII:405656-406185 + 13 3.60e-11 TAGTAGCTCG CGTGGCGTAATGGCAACGCGTCTGACTTCT AATCAGAAGA chrXVI:209986-210447 - 63 6.43e-11 TTGTCCGA TATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrXIII:290541-291099 + 36 6.43e-11 TATAATCCGA TATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrXI:140790-141299 - 61 6.43e-11 TGTAATCCGA TATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrX:115827-116205 - 10 6.43e-11 TATAATCCGA TATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGA chrIX:370258-370593 + 47 6.43e-11 TATAATCCGA TATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrII:644990-645443 + 6 6.43e-11 TCCGA TATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrVIII:475551-475911 - 63 9.71e-11 TCTGTTCC AATAGTGTAGCGGCTATCACGTTGCCTTCA CACGGCAAAG chrIV:1075332-1075704 - 42 9.71e-11 ATATTGTTCC AATAGTGTAGCGGCTATCACGTTGCCTTCA CACGGCAAAG chrXVI:744119-744523 + 18 4.06e-10 TAAAAGCCTC CTTAGCTTAGTGGTAGAGCGTTGCACTTGT AATGCAAAGG chrVII:1004038-1004412 + 46 4.06e-10 GGTTTGCCTC CTTAGCTTAGTGGTAGAGCGTTGCACTTGT AATGCAAAGG chrVII:661558-661911 + 70 4.06e-10 AATTTGCCTC CTTAGCTTAGTGGTAGAGCGTTGCACTTGT A chrVII:878622-878997 - 22 2.85e-09 AAGATGAAGC GGTGGCTCAATGGTAGAGCTTTCGACTCCA ATTAAATCTT chrVII:287235-287632 - 38 2.85e-09 AAGATGAAGC GGTGGCTCAATGGTAGAGCTTTCGACTCCA ATTAAATCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BATAGYKTAATGGYHAKVMBDTBVVSTTBT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:808141-808497 8.1e-13 13_[-3]_57 chrXII:448508-448960 5.2e-12 2_[-3]_68 chrV:130991-131325 5.2e-12 10_[-3]_60 chrXII:426837-427438 8.7e-12 49_[+3]_21 chrXI:513220-513516 8.7e-12 50_[-3]_20 chrX:355218-355737 8.7e-12 33_[+3]_37 chrX:204554-204969 8.7e-12 28_[+3]_42 chrVII:544430-544832 8.7e-12 32_[-3]_38 chrVII:531452-531803 8.7e-12 37_[+3]_33 chrIX:324119-324533 8.7e-12 63_[-3]_7 chrIV:1016930-1017656 1e-11 [-3]_70 chrXIII:747741-748138 3.6e-11 39_[-3]_31 chrXIII:131567-132200 3.6e-11 28_[-3]_42 chrXI:162433-162667 3.6e-11 23_[-3]_47 chrX:374227-374874 3.6e-11 42_[-3]_28 chrII:405656-406185 3.6e-11 12_[+3]_58 chrXVI:209986-210447 6.4e-11 62_[-3]_8 chrXIII:290541-291099 6.4e-11 35_[+3]_35 chrXI:140790-141299 6.4e-11 60_[-3]_10 chrX:115827-116205 6.4e-11 9_[-3]_61 chrIX:370258-370593 6.4e-11 46_[+3]_24 chrII:644990-645443 6.4e-11 5_[+3]_65 chrVIII:475551-475911 9.7e-11 62_[-3]_8 chrIV:1075332-1075704 9.7e-11 41_[-3]_29 chrXVI:744119-744523 4.1e-10 17_[+3]_53 chrVII:1004038-1004412 4.1e-10 45_[+3]_25 chrVII:661558-661911 4.1e-10 69_[+3]_1 chrVII:878622-878997 2.8e-09 21_[-3]_49 chrVII:287235-287632 2.8e-09 37_[-3]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BATAGYKTAATGGYHAKVMBDTBVVSTTBT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BATAGYKTAATGGYHAKVMBDTBVVSTTBT width=30 seqs=29 chrXIII:808141-808497 ( 14) TATAGTGTAGTGGTTATCACTTTCGGTTCT 1 chrXII:448508-448960 ( 3) TATAGTGTAGTGGTTATCACTTTCGGTTTT 1 chrV:130991-131325 ( 11) TATAGTGTAGTGGTTATCACTTTCGGTTTT 1 chrXII:426837-427438 ( 50) GATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrXI:513220-513516 ( 51) GATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrX:355218-355737 ( 34) GATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrX:204554-204969 ( 29) GATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrVII:544430-544832 ( 33) GATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrVII:531452-531803 ( 38) GATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrIX:324119-324533 ( 64) GATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrIV:1016930-1017656 ( 1) TGTAGTGTAACGGCTATCACATCACGTTCT 1 chrXIII:747741-748138 ( 40) CGTGGCGTAATGGCAACGCGTCTGACTTCT 1 chrXIII:131567-132200 ( 29) CGTGGCGTAATGGCAACGCGTCTGACTTCT 1 chrXI:162433-162667 ( 24) CGTGGCGTAATGGCAACGCGTCTGACTTCT 1 chrX:374227-374874 ( 43) CGTGGCGTAATGGCAACGCGTCTGACTTCT 1 chrII:405656-406185 ( 13) CGTGGCGTAATGGCAACGCGTCTGACTTCT 1 chrXVI:209986-210447 ( 63) TATAGTGTAACGGCTATCACATCACGCTTT 1 chrXIII:290541-291099 ( 36) TATAGTGTAACGGCTATCACATCACGCTTT 1 chrXI:140790-141299 ( 61) TATAGTGTAACGGCTATCACATCACGCTTT 1 chrX:115827-116205 ( 10) TATAGTGTAACGGCTATCACATCACGCTTT 1 chrIX:370258-370593 ( 47) TATAGTGTAACGGCTATCACATCACGCTTT 1 chrII:644990-645443 ( 6) TATAGTGTAACGGCTATCACATCACGCTTT 1 chrVIII:475551-475911 ( 63) AATAGTGTAGCGGCTATCACGTTGCCTTCA 1 chrIV:1075332-1075704 ( 42) AATAGTGTAGCGGCTATCACGTTGCCTTCA 1 chrXVI:744119-744523 ( 18) CTTAGCTTAGTGGTAGAGCGTTGCACTTGT 1 chrVII:1004038-1004412 ( 46) CTTAGCTTAGTGGTAGAGCGTTGCACTTGT 1 chrVII:661558-661911 ( 70) CTTAGCTTAGTGGTAGAGCGTTGCACTTGT 1 chrVII:878622-878997 ( 22) GGTGGCTCAATGGTAGAGCTTTCGACTCCA 1 chrVII:287235-287632 ( 38) GGTGGCTCAATGGTAGAGCTTTCGACTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BATAGYKTAATGGYHAKVMBDTBVVSTTBT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 39902 bayes= 9.44922 E= 6.9e-095 -218 55 72 14 99 -1150 55 -159 -1150 -1150 -1150 168 128 -1150 36 -1150 -1150 -1150 241 -1150 -1150 88 -1150 107 -1150 -1150 164 41 -1150 -145 -1150 158 168 -1150 -1150 -1150 121 -1150 55 -1150 -1150 72 -1150 114 -1150 -1150 241 -1150 -1150 -1150 241 -1150 -1150 136 -1150 73 14 36 -1150 41 141 -1150 -12 -1150 -86 -12 36 41 -37 114 88 -1150 107 88 -1150 -1150 -1150 114 55 -1 -37 -1150 72 52 -1150 -12 36 91 -1150 72 88 14 -37 125 72 -1150 14 72 88 -1150 -1150 180 88 -1150 -1150 14 -1150 135 -1150 -145 -1150 158 -1150 101 88 -18 -118 -1150 -1150 147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BATAGYKTAATGGYHAKVMBDTBVVSTTBT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 29 E= 6.9e-095 0.068966 0.275862 0.310345 0.344828 0.620690 0.000000 0.275862 0.103448 0.000000 0.000000 0.000000 1.000000 0.758621 0.000000 0.241379 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.344828 0.000000 0.655172 0.000000 0.000000 0.586207 0.413793 0.000000 0.068966 0.000000 0.931034 1.000000 0.000000 0.000000 0.000000 0.724138 0.000000 0.275862 0.000000 0.000000 0.310345 0.000000 0.689655 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.482759 0.000000 0.517241 0.344828 0.241379 0.000000 0.413793 0.827586 0.000000 0.172414 0.000000 0.172414 0.172414 0.241379 0.413793 0.241379 0.413793 0.344828 0.000000 0.655172 0.344828 0.000000 0.000000 0.000000 0.413793 0.275862 0.310345 0.241379 0.000000 0.310345 0.448276 0.000000 0.172414 0.241379 0.586207 0.000000 0.310345 0.344828 0.344828 0.241379 0.448276 0.310345 0.000000 0.344828 0.310345 0.344828 0.000000 0.000000 0.655172 0.344828 0.000000 0.000000 0.206897 0.000000 0.793103 0.000000 0.068966 0.000000 0.931034 0.000000 0.379310 0.344828 0.275862 0.137931 0.000000 0.000000 0.862069 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BATAGYKTAATGGYHAKVMBDTBVVSTTBT MEME-3 regular expression -------------------------------------------------------------------------------- [TGC][AG]T[AG]G[TC][GT]TA[AG][TC]GG[TC][TAC]A[TG][CGA][AC][CTG][TGA][TG][GTC][CGA][AGC][CG][TC]T[CGT]T -------------------------------------------------------------------------------- Time 854.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:81948-82255 4.42e-02 100 chrI:138998-139341 9.04e-05 39_[+2(1.86e-07)]_40 chrI:166170-166632 5.01e-01 100 chrII:6808-7095 8.93e-01 100 chrII:9457-9853 1.05e-03 26_[-1(5.73e-07)]_50 chrII:36249-36590 8.79e-06 35_[+2(2.47e-08)]_44 chrII:36737-36928 8.93e-01 100 chrII:45021-45316 9.02e-01 100 chrII:45610-46341 9.91e-01 100 chrII:60635-61398 4.40e-01 100 chrII:87958-88571 8.81e-01 100 chrII:89666-89973 5.55e-01 100 chrII:165106-165374 6.69e-01 100 chrII:167936-168165 8.11e-01 100 chrII:181174-181613 5.97e-02 100 chrII:197171-197803 1.02e-07 63_[+2(4.21e-12)]_16 chrII:217131-217373 6.24e-02 27_[-3(7.53e-05)]_43 chrII:226963-227343 1.51e-02 18_[-1(2.67e-05)]_58 chrII:236529-237284 9.51e-01 100 chrII:254489-254885 9.91e-01 100 chrII:255083-255655 4.40e-01 100 chrII:256348-256783 5.95e-01 100 chrII:266236-266956 8.75e-01 100 chrII:311146-311949 5.67e-01 100 chrII:326503-327191 5.53e-10 5_[+1(9.27e-10)]_11_[-2(1.14e-06)]_\ 39 chrII:332345-333085 1.35e-01 100 chrII:347423-347931 1.05e-03 24_[-1(5.73e-07)]_52 chrII:350595-350956 6.83e-01 100 chrII:393361-395322 1.03e-02 32_[+1(6.59e-05)]_44 chrII:405656-406185 2.80e-13 12_[+3(3.60e-11)]_2_[-1(1.34e-09)]_\ 32 chrII:415533-416272 5.17e-01 100 chrII:477101-477409 7.55e-01 100 chrII:530528-530767 9.69e-01 100 chrII:544564-546031 7.91e-01 100 chrII:580027-581150 9.33e-01 100 chrII:592257-592645 1.93e-01 100 chrII:592944-593251 6.23e-01 100 chrII:604165-606048 5.16e-01 100 chrII:644990-645443 6.36e-14 5_[+3(6.43e-11)]_2_[-1(1.19e-10)]_\ 39 chrIII:87-2044 9.13e-01 100 chrIII:13960-14594 6.74e-02 100 chrIII:82463-82643 9.40e-01 100 chrIII:90782-91072 1.97e-02 60_[-1(3.64e-05)]_16 chrIII:123495-123784 1.22e-03 31_[-2(2.07e-06)]_48 chrIII:127560-127866 5.45e-06 59_[+2(5.79e-10)]_20 chrIII:137627-139017 1.60e-02 67_[-2(4.78e-05)]_12 chrIII:142385-142954 9.94e-01 100 chrIII:149717-150233 2.08e-03 31_[-1(5.42e-07)]_45 chrIII:151126-151560 1.24e-10 1_[+1(6.35e-10)]_10_[-2(1.57e-07)]_\ 44 chrIII:162519-163348 8.90e-01 100 chrIII:163513-163828 2.77e-01 100 chrIII:168102-168510 9.03e-06 55_[+1(9.27e-10)]_21 chrIII:178380-178712 6.05e-01 100 chrIII:227794-228180 3.00e-08 11_[+2(5.04e-09)]_38_[-1(4.03e-05)]_\ 6 chrIII:295355-295946 7.61e-01 100 chrIII:308696-308965 4.53e-03 32_[+1(3.89e-05)]_44 chrIV:83427-83803 4.74e-08 18_[-1(4.66e-11)]_58 chrIV:117181-118195 3.26e-01 100 chrIV:129898-130932 7.90e-01 100 chrIV:208993-209617 3.71e-01 100 chrIV:216644-218071 9.61e-02 100 chrIV:221447-222387 9.95e-01 100 chrIV:229551-230505 6.66e-01 100 chrIV:308043-308369 5.47e-01 100 chrIV:321691-321934 3.53e-01 100 chrIV:322219-323569 9.17e-01 100 chrIV:331078-332862 9.02e-01 100 chrIV:340513-341616 3.54e-01 100 chrIV:357940-358375 8.78e-02 100 chrIV:359187-359794 3.72e-01 100 chrIV:410239-410451 9.79e-01 100 chrIV:411339-411576 2.05e-01 100 chrIV:434106-435153 5.42e-01 100 chrIV:437572-438589 6.08e-01 100 chrIV:464068-470794 5.43e-01 100 chrIV:488534-488988 9.99e-01 100 chrIV:490342-491241 1.43e-01 100 chrIV:491505-492623 2.99e-01 100 chrIV:507767-509475 5.37e-02 100 chrIV:519650-519900 1.57e-08 24_[+2(1.76e-08)]_21_[-1(5.73e-07)]_\ 10 chrIV:520672-521110 9.18e-01 100 chrIV:539007-539209 2.67e-01 100 chrIV:541172-541870 6.28e-01 100 chrIV:555791-556461 3.70e-01 100 chrIV:568736-569535 4.89e-01 100 chrIV:579071-580423 7.07e-02 100 chrIV:580594-580813 3.89e-01 100 chrIV:600781-601529 4.24e-01 100 chrIV:601958-602292 7.83e-01 100 chrIV:619778-620389 8.09e-01 100 chrIV:667787-668569 6.58e-01 100 chrIV:757470-758456 1.06e-01 100 chrIV:802591-802841 3.18e-06 75_[+1(9.27e-10)]_1 chrIV:884292-884739 4.10e-01 100 chrIV:945806-946592 9.20e-01 100 chrIV:992676-993188 6.37e-01 100 chrIV:1016930-1017656 1.07e-07 [-3(1.02e-11)]_70 chrIV:1075332-1075704 1.75e-14 14_[+1(2.15e-10)]_3_[-3(9.71e-11)]_\ 29 chrIV:1095181-1095717 3.67e-05 34_[-2(2.47e-08)]_45 chrIV:1150701-1151145 1.18e-06 40_[-2(2.48e-09)]_39 chrIV:1175625-1176259 9.74e-01 100 chrIV:1176544-1176710 7.77e-01 100 chrIV:1201061-1201920 9.98e-01 100 chrIV:1236431-1238001 3.64e-01 100 chrIV:1278741-1279014 1.15e-01 100 chrIV:1300023-1301288 2.85e-02 3_[+1(4.17e-05)]_73 chrIV:1301761-1302142 4.39e-01 100 chrIV:1305195-1306564 9.67e-01 100 chrIV:1328953-1329643 1.92e-01 100 chrIV:1352377-1353091 8.57e-01 100 chrIV:1354385-1355570 2.62e-01 100 chrIV:1355749-1355986 9.20e-01 100 chrIV:1359457-1361108 4.03e-01 100 chrIV:1401302-1401951 6.84e-01 100 chrIV:1402727-1403277 4.96e-01 100 chrIV:1450211-1451195 2.96e-01 100 chrIV:1461355-1461846 5.27e-01 100 chrIV:1489145-1489850 7.67e-01 100 chrIX:59627-60069 1.69e-01 100 chrIX:67710-68496 5.43e-01 100 chrIX:68654-69540 3.94e-01 100 chrIX:98424-99428 7.10e-02 100 chrIX:99676-99967 7.99e-01 100 chrIX:174691-175380 5.59e-08 52_[+2(4.82e-10)]_27 chrIX:183292-183670 2.80e-16 19_[+1(4.66e-11)]_11_[-2(4.21e-12)]_\ 25 chrIX:197425-198058 3.07e-02 3_[-3(8.94e-05)]_67 chrIX:210660-210961 5.88e-01 100 chrIX:214966-216424 1.76e-01 100 chrIX:248522-249393 4.60e-01 100 chrIX:254270-254512 3.05e-01 100 chrIX:257395-258161 5.85e-01 100 chrIX:299984-300522 1.24e-10 35_[+1(6.35e-10)]_10_[-2(1.57e-07)]_\ 10 chrIX:316141-316545 4.62e-01 100 chrIX:316699-317650 2.50e-01 100 chrIX:324119-324533 3.57e-14 37_[+1(7.34e-08)]_2_[-3(8.70e-12)]_\ 7 chrIX:325577-326049 1.15e-05 22_[-1(6.27e-09)]_54 chrIX:336130-336588 8.30e-05 50_[+1(7.34e-08)]_26 chrIX:370258-370593 6.54e-07 46_[+3(6.43e-11)]_24 chrV:6218-6581 6.56e-01 100 chrV:17185-17742 7.43e-01 100 chrV:53567-54433 9.39e-01 100 chrV:61089-62125 6.81e-01 100 chrV:67624-68623 4.64e-01 100 chrV:78098-79415 1.17e-03 14_[+2(1.37e-06)]_65 chrV:85168-86280 4.35e-01 100 chrV:86432-86780 2.43e-05 54_[+2(4.39e-09)]_25 chrV:99944-100281 5.11e-01 100 chrV:117548-118264 4.87e-02 100 chrV:130991-131325 5.55e-10 10_[-3(5.21e-12)]_60 chrV:135214-135612 1.16e-06 72_[+1(6.35e-10)]_4 chrV:138493-140040 8.36e-02 100 chrV:140201-140852 9.85e-01 100 chrV:176900-177470 1.37e-06 [-1(1.19e-10)]_76 chrV:207352-207529 8.52e-04 3_[-1(7.91e-08)]_73 chrV:207714-208006 2.75e-01 100 chrV:249667-251178 1.22e-01 100 chrV:269271-269858 1.89e-01 100 chrV:270416-270632 6.41e-01 100 chrV:287900-288754 9.94e-01 100 chrV:305834-306156 7.51e-01 100 chrV:311758-312270 3.33e-06 69_[+1(1.61e-10)]_7 chrV:322069-323069 9.42e-01 100 chrV:354798-355392 7.29e-01 100 chrV:396211-396531 9.95e-01 100 chrV:396732-397569 6.89e-01 100 chrV:423117-423449 9.63e-01 100 chrV:431039-431489 1.43e-02 31_[+1(3.28e-05)]_45 chrV:434397-435133 1.38e-01 100 chrV:435635-435931 1.24e-10 29_[+1(6.35e-10)]_10_[-2(1.57e-07)]_\ 16 chrV:438534-438915 5.54e-12 32_[+2(5.04e-09)]_11_[-1(1.39e-10)]_\ 12 chrV:441877-442632 6.49e-01 100 chrV:443104-443335 2.80e-16 43_[+1(4.66e-11)]_11_[-2(4.21e-12)]_\ 1 chrV:469269-469728 5.54e-12 15_[+2(5.04e-09)]_11_[-1(1.39e-10)]_\ 29 chrV:486777-487707 9.05e-01 100 chrV:551066-551643 1.17e-08 26_[-2(4.21e-12)]_53 chrVI:4573-4757 7.90e-01 100 chrVI:64003-65339 3.37e-01 100 chrVI:95509-95792 1.99e-01 100 chrVI:101371-101590 3.97e-08 13_[-1(1.61e-10)]_63 chrVI:137276-137817 6.88e-11 [+1(5.39e-08)]_11_[-2(5.79e-10)]_44 chrVI:157905-158196 8.95e-01 100 chrVI:162053-162380 8.98e-06 5_[-3(5.78e-05)]_33_[+2(2.38e-07)]_\ 11 chrVI:167283-167705 4.57e-06 46_[-1(2.80e-08)]_30 chrVI:180504-181208 3.99e-01 100 chrVI:191203-191749 3.58e-01 100 chrVI:210490-210932 8.50e-04 18_[-2(6.75e-07)]_61 chrVI:221765-222046 7.86e-01 100 chrVI:223292-224839 5.27e-01 100 chrVI:226515-226903 1.24e-10 39_[+1(6.35e-10)]_10_[-2(1.57e-07)]_\ 6 chrVII:1027-2026 4.42e-01 100 chrVII:110337-110787 9.65e-01 100 chrVII:115318-115702 3.51e-07 34_[+2(1.98e-08)]_45 chrVII:121935-122510 2.01e-01 100 chrVII:149157-149453 9.84e-01 100 chrVII:185438-185790 9.13e-01 100 chrVII:205126-205746 5.81e-01 100 chrVII:227370-228246 9.80e-01 100 chrVII:254180-254727 9.73e-01 100 chrVII:277061-277348 4.95e-01 100 chrVII:287235-287632 7.45e-06 37_[-3(2.85e-09)]_33 chrVII:300234-300367 6.78e-01 100 chrVII:310500-312229 8.07e-01 100 chrVII:319262-320122 5.79e-01 100 chrVII:328389-329255 9.90e-01 100 chrVII:329424-329894 8.31e-01 100 chrVII:364911-366627 9.80e-01 100 chrVII:405462-405792 9.33e-01 100 chrVII:412061-412559 5.54e-12 44_[+1(1.39e-10)]_11_[-2(5.04e-09)] chrVII:422742-423426 3.19e-04 64_[+2(1.86e-07)]_15 chrVII:438616-438869 4.48e-01 100 chrVII:440286-440923 9.50e-01 100 chrVII:479244-482906 1.50e-01 100 chrVII:531452-531803 3.57e-14 37_[+3(8.70e-12)]_2_[-1(7.34e-08)]_\ 7 chrVII:533162-535187 3.65e-01 100 chrVII:541715-542138 8.64e-07 10_[-1(1.19e-10)]_66 chrVII:544430-544832 3.57e-14 6_[+1(7.34e-08)]_2_[-3(8.70e-12)]_\ 38 chrVII:555148-556682 8.26e-01 100 chrVII:556969-557986 8.59e-01 100 chrVII:561433-561704 6.44e-01 100 chrVII:609466-610077 9.32e-01 100 chrVII:648782-649342 3.20e-01 100 chrVII:658072-659173 9.30e-01 100 chrVII:661558-661911 1.92e-06 69_[+3(4.06e-10)]_1 chrVII:700415-701159 3.25e-01 100 chrVII:706953-707192 8.45e-01 100 chrVII:726448-726727 8.84e-01 100 chrVII:726934-728091 9.34e-01 100 chrVII:730967-731419 6.88e-11 [+2(5.79e-10)]_11_[-1(5.39e-08)]_44 chrVII:736203-736999 7.01e-01 100 chrVII:738772-739501 2.80e-16 42_[+2(4.21e-12)]_11_[-1(4.66e-11)]_\ 2 chrVII:774172-774584 2.10e-13 27_[+2(3.32e-09)]_10_[-1(2.47e-10)]_\ 18 chrVII:779354-779701 8.21e-01 100 chrVII:787368-787843 8.36e-01 100 chrVII:788379-788696 8.95e-01 100 chrVII:794085-794505 6.29e-01 100 chrVII:798557-800136 9.36e-02 100 chrVII:806584-807548 6.69e-02 100 chrVII:823353-823674 5.54e-12 25_[+2(5.04e-09)]_11_[-1(1.39e-10)]_\ 19 chrVII:824029-827311 7.88e-01 100 chrVII:828199-828952 7.21e-01 100 chrVII:845490-845914 6.90e-12 3_[+2(2.38e-07)]_8_[-1(4.66e-11)]_\ 44 chrVII:857096-857594 9.95e-01 100 chrVII:876177-876906 9.49e-01 100 chrVII:878622-878997 7.45e-06 21_[-3(2.85e-09)]_49 chrVII:882784-883945 4.99e-02 12_[-2(5.29e-05)]_67 chrVII:892762-896604 1.20e-02 25_[-1(5.98e-05)]_51 chrVII:930879-931145 6.90e-12 1_[+1(4.66e-11)]_8_[-2(2.38e-07)]_\ 46 chrVII:939037-939587 9.45e-01 100 chrVII:1004038-1004412 3.33e-07 45_[+3(4.06e-10)]_25 chrVII:1052333-1052674 3.39e-01 100 chrVIII:34436-35153 2.20e-01 100 chrVIII:62619-63025 1.02e-04 19_[-1(7.91e-08)]_57 chrVIII:74844-75940 8.97e-01 100 chrVIII:103829-104299 9.85e-01 100 chrVIII:115958-116294 3.50e-12 41_[+1(6.27e-09)]_10_[-2(4.82e-10)]_\ 4 chrVIII:125949-126266 9.24e-01 100 chrVIII:126479-127491 8.22e-01 100 chrVIII:132824-133353 2.38e-05 41_[-2(4.39e-09)]_38 chrVIII:133585-134619 9.66e-01 100 chrVIII:145922-146745 8.14e-06 3_[-2(3.32e-09)]_76 chrVIII:149001-149225 2.07e-01 100 chrVIII:149570-149727 4.41e-01 100 chrVIII:175086-175325 1.43e-01 100 chrVIII:237759-238077 1.84e-05 43_[-2(2.47e-08)]_36 chrVIII:296741-297184 3.43e-01 100 chrVIII:358337-358758 1.20e-05 44_[-2(2.47e-08)]_35 chrVIII:382953-383297 2.24e-01 100 chrVIII:388677-389200 2.92e-10 15_[+1(1.61e-10)]_40_[-2(1.86e-07)] chrVIII:411001-411975 8.91e-02 100 chrVIII:451353-452969 5.41e-01 100 chrVIII:466906-467272 1.00e+00 100 chrVIII:475551-475911 1.75e-14 35_[+1(2.15e-10)]_3_[-3(9.71e-11)]_\ 8 chrVIII:505860-506176 4.66e-01 100 chrVIII:555751-556362 2.75e-01 100 chrVIII:556952-557132 7.85e-01 100 chrX:59084-59454 2.08e-01 100 chrX:73426-74640 1.54e-01 100 chrX:74823-75663 6.01e-01 100 chrX:75893-76493 1.37e-01 100 chrX:90098-90392 8.89e-01 100 chrX:115827-116205 4.06e-07 9_[-3(6.43e-11)]_61 chrX:139171-140097 2.48e-01 100 chrX:157490-157898 8.29e-01 100 chrX:197186-197519 2.10e-13 21_[+1(2.47e-10)]_10_[-2(3.32e-09)]_\ 24 chrX:204554-204969 3.57e-14 28_[+3(8.70e-12)]_2_[-1(7.34e-08)]_\ 16 chrX:212388-214885 9.47e-02 100 chrX:215750-216964 1.85e-01 100 chrX:227793-228579 8.97e-01 100 chrX:233192-234108 1.94e-03 32_[-2(3.02e-06)]_47 chrX:348930-349432 2.80e-01 100 chrX:354158-354592 9.14e-01 100 chrX:355218-355737 3.57e-14 33_[+3(8.70e-12)]_2_[-1(7.34e-08)]_\ 11 chrX:374227-374874 2.80e-13 16_[+1(1.34e-09)]_2_[-3(3.60e-11)]_\ 28 chrX:378178-378574 5.54e-12 40_[+2(5.04e-09)]_11_[-1(1.39e-10)]_\ 4 chrX:390925-391242 6.15e-10 20_[+1(1.37e-08)]_10_[-2(3.27e-07)]_\ 25 chrX:391897-392077 2.70e-01 100 chrX:396576-396946 6.90e-12 25_[+1(4.66e-11)]_8_[-2(2.38e-07)]_\ 22 chrX:414808-416242 5.21e-01 100 chrX:422668-423231 6.15e-10 44_[+2(3.27e-07)]_10_[-1(1.37e-08)]_\ 1 chrX:424309-424706 7.41e-06 30_[-2(1.76e-08)]_49 chrX:517678-518037 2.63e-05 16_[+1(5.42e-07)]_2_[-3(3.52e-05)]_\ 28 chrX:523701-524341 1.51e-02 51_[+1(2.67e-05)]_25 chrX:531619-532186 3.01e-07 11_[-1(4.66e-11)]_65 chrX:538526-538729 4.70e-05 14_[-1(4.13e-09)]_62 chrX:540997-541842 4.28e-01 100 chrX:542762-543245 5.48e-09 13_[+1(2.80e-08)]_26_[-2(6.75e-07)]_\ 16 chrX:606109-608125 9.78e-01 100 chrX:617706-618085 8.27e-01 100 chrX:651262-651583 7.84e-01 100 chrX:651962-652870 9.03e-01 100 chrX:703298-703622 8.39e-01 100 chrXI:781-1056 5.17e-01 100 chrXI:46560-46979 7.66e-10 26_[+1(1.05e-09)]_2_[-3(5.21e-06)]_\ 18 chrXI:67805-68016 8.17e-01 100 chrXI:74470-74785 1.09e-06 53_[+2(5.79e-10)]_26 chrXI:84036-84409 7.41e-06 42_[+2(1.76e-08)]_37 chrXI:108756-109051 6.18e-01 100 chrXI:140790-141299 6.36e-14 34_[+1(1.19e-10)]_2_[-3(6.43e-11)]_\ 10 chrXI:158254-159619 7.61e-01 100 chrXI:162433-162667 8.81e-08 23_[-3(3.60e-11)]_47 chrXI:163391-164488 9.72e-01 100 chrXI:202291-203049 5.91e-01 100 chrXI:219586-220102 8.60e-01 100 chrXI:259121-259893 6.06e-01 100 chrXI:282821-284487 8.66e-01 100 chrXI:302742-303227 6.63e-05 54_[-1(4.60e-08)]_22 chrXI:307964-308454 2.12e-05 30_[-2(5.04e-09)]_49 chrXI:313267-313594 8.24e-07 31_[+1(7.91e-08)]_2_[-3(1.79e-05)]_\ 13 chrXI:334130-334956 3.49e-01 100 chrXI:340161-340959 7.90e-01 100 chrXI:379503-379916 5.54e-12 27_[+2(5.04e-09)]_11_[-1(1.39e-10)]_\ 17 chrXI:382234-382407 6.70e-02 100 chrXI:430885-431605 7.48e-01 100 chrXI:457630-459314 9.83e-01 100 chrXI:490777-491336 8.66e-01 100 chrXI:513220-513516 3.57e-14 24_[+1(7.34e-08)]_2_[-3(8.70e-12)]_\ 20 chrXI:517798-518063 9.45e-01 100 chrXI:519914-521197 1.17e-01 100 chrXI:578797-579414 3.41e-02 100 chrXI:618836-619284 6.36e-01 100 chrXI:666619-666777 1.78e-01 100 chrXII:54-208 4.08e-01 100 chrXII:47864-49481 9.62e-01 100 chrXII:92425-92726 9.04e-05 29_[+2(1.86e-07)]_50 chrXII:96116-96313 5.98e-01 100 chrXII:167757-168199 1.60e-07 26_[+1(2.67e-05)]_19_[-2(4.39e-09)]_\ 10 chrXII:198669-199682 7.59e-02 100 chrXII:201737-202687 2.43e-02 100 chrXII:214728-215067 2.14e-06 46_[+1(1.61e-10)]_30 chrXII:232089-234212 5.39e-01 100 chrXII:238757-239132 2.39e-01 100 chrXII:241684-241973 9.91e-01 100 chrXII:242189-243512 1.41e-01 100 chrXII:262463-263932 1.57e-01 100 chrXII:282721-283845 3.07e-01 100 chrXII:348219-348722 9.03e-01 100 chrXII:366045-366523 3.25e-02 48_[+1(6.38e-05)]_28 chrXII:368724-369560 9.50e-01 100 chrXII:369704-370241 2.36e-01 100 chrXII:374214-374766 9.06e-01 100 chrXII:424204-424415 5.69e-01 100 chrXII:426837-427438 1.02e-09 49_[+3(8.70e-12)]_21 chrXII:448508-448960 4.55e-10 2_[-3(5.21e-12)]_68 chrXII:459645-460114 1.74e-01 100 chrXII:460489-460682 6.26e-01 100 chrXII:498233-499890 5.32e-01 100 chrXII:521813-522414 8.60e-01 100 chrXII:592094-592719 9.51e-01 100 chrXII:605241-605598 9.11e-08 35_[-2(5.10e-07)]_44 chrXII:628038-629056 1.00e+00 100 chrXII:636699-639939 2.21e-01 100 chrXII:656846-657164 5.13e-07 23_[-2(3.32e-09)]_56 chrXII:673560-674179 1.92e-01 100 chrXII:687670-687901 5.78e-01 100 chrXII:713181-713502 9.96e-01 100 chrXII:732005-732278 2.64e-07 5_[+2(8.18e-10)]_74 chrXII:734626-734934 1.65e-08 78_[+2(4.21e-12)]_1 chrXII:781496-781833 8.39e-01 100 chrXII:784076-784520 9.51e-01 100 chrXII:793751-795313 4.47e-01 100 chrXII:796317-796816 2.63e-01 100 chrXII:796997-797265 5.92e-01 100 chrXII:818499-818721 1.79e-03 55_[+2(1.09e-05)]_24 chrXII:818902-819108 6.17e-01 100 chrXII:819899-820284 4.53e-01 100 chrXII:822190-823328 9.97e-01 100 chrXII:837712-839401 1.01e-01 100 chrXII:855759-857556 8.01e-01 100 chrXII:875252-875975 9.42e-01 100 chrXII:897745-899093 1.33e-01 100 chrXII:919389-921176 2.07e-01 100 chrXII:922143-922594 4.34e-01 100 chrXII:932127-932464 8.88e-01 100 chrXII:962623-963360 4.17e-04 41_[+1(5.73e-07)]_35 chrXII:975795-976098 9.96e-01 100 chrXII:1017339-1019362 6.70e-02 100 chrXII:1028250-1028534 4.90e-01 100 chrXII:1051973-1052228 2.80e-16 31_[+1(4.66e-11)]_11_[-2(4.21e-12)]_\ 13 chrXIII:91152-92100 5.85e-01 100 chrXIII:117014-118713 8.73e-01 100 chrXIII:131567-132200 2.80e-13 2_[+1(1.34e-09)]_2_[-3(3.60e-11)]_\ 42 chrXIII:145882-146227 8.86e-01 100 chrXIII:163452-164330 5.00e-01 100 chrXIII:168692-168999 5.48e-09 6_[+2(6.75e-07)]_26_[-1(2.80e-08)]_\ 23 chrXIII:195936-196295 3.48e-11 13_[+1(1.61e-10)]_40_[-2(1.86e-07)]_\ 2 chrXIII:224108-224425 9.61e-01 100 chrXIII:225368-225680 6.78e-01 100 chrXIII:259033-259442 2.49e-05 24_[-2(4.39e-09)]_55 chrXIII:282327-282495 9.87e-01 100 chrXIII:282783-283039 9.31e-01 100 chrXIII:288078-289680 8.34e-02 100 chrXIII:290541-291099 6.36e-14 35_[+3(6.43e-11)]_2_[-1(1.19e-10)]_\ 9 chrXIII:296391-298846 6.73e-01 100 chrXIII:302856-303964 6.53e-01 100 chrXIII:320978-321678 4.60e-01 100 chrXIII:334944-335212 1.76e-01 100 chrXIII:352111-352433 2.63e-06 64_[+2(2.47e-08)]_15 chrXIII:362940-363313 1.02e-04 24_[-1(7.91e-08)]_52 chrXIII:372200-372746 5.54e-12 32_[+1(1.39e-10)]_11_[-2(5.04e-09)]_\ 12 chrXIII:378761-379591 1.97e-01 100 chrXIII:420346-420843 1.08e-06 54_[+1(1.39e-10)]_22 chrXIII:463432-463853 2.08e-01 100 chrXIII:473015-473190 4.68e-01 100 chrXIII:480434-480840 3.48e-10 44_[+1(6.35e-10)]_10_[-2(1.57e-07)]_\ 1 chrXIII:499120-500754 6.07e-01 100 chrXIII:504701-505275 1.97e-02 35_[-1(3.64e-05)]_41 chrXIII:551403-551763 9.96e-01 100 chrXIII:551907-552290 3.94e-01 100 chrXIII:552513-553097 8.26e-02 100 chrXIII:572527-573151 4.90e-01 100 chrXIII:586492-586851 4.59e-12 25_[+1(1.39e-10)]_11_[-2(5.04e-09)]_\ 19 chrXIII:626163-626849 9.95e-02 100 chrXIII:650835-651094 9.49e-01 100 chrXIII:652061-652868 6.70e-01 100 chrXIII:700701-701481 9.01e-01 100 chrXIII:701754-703307 4.62e-01 100 chrXIII:732041-733151 7.56e-01 100 chrXIII:747741-748138 2.80e-13 13_[+1(1.34e-09)]_2_[-3(3.60e-11)]_\ 31 chrXIII:754451-754806 9.75e-01 100 chrXIII:768212-768438 7.65e-01 100 chrXIII:808141-808497 1.74e-11 13_[-3(8.11e-13)]_57 chrXIII:837725-838180 8.50e-04 32_[+2(6.75e-07)]_47 chrXIII:887012-889247 6.88e-01 100 chrXIV:24172-26782 1.32e-01 100 chrXIV:63160-64502 4.59e-01 100 chrXIV:88989-89929 8.95e-01 100 chrXIV:96040-96460 9.27e-06 51_[+1(4.13e-09)]_25 chrXIV:102582-103087 4.88e-01 100 chrXIV:104629-105103 1.15e-05 26_[-1(6.27e-09)]_50 chrXIV:217376-217593 2.02e-01 100 chrXIV:241434-241756 6.43e-01 100 chrXIV:282671-283455 5.42e-01 100 chrXIV:302662-303829 4.90e-01 100 chrXIV:330370-331057 3.68e-01 100 chrXIV:349905-350074 3.48e-01 100 chrXIV:374731-375095 9.28e-11 12_[+2(2.47e-08)]_28_[-1(4.59e-09)]_\ 15 chrXIV:413586-414853 7.33e-03 100 chrXIV:442863-444776 8.15e-01 100 chrXIV:493800-495063 2.58e-01 100 chrXIV:495229-495550 6.55e-01 100 chrXIV:499645-500718 4.73e-01 100 chrXIV:518670-519126 1.33e-01 100 chrXIV:546598-547444 4.81e-01 100 chrXIV:560182-560788 9.83e-01 100 chrXIV:568049-568484 8.39e-01 100 chrXIV:569512-570039 2.71e-01 100 chrXIV:574917-576104 7.22e-01 100 chrXIV:585478-586279 1.64e-01 100 chrXIV:602090-602554 1.21e-08 46_[+2(4.21e-12)]_33 chrXIV:631730-632021 4.76e-13 31_[+1(3.86e-14)]_9_[-2(2.07e-06)]_\ 15 chrXIV:632489-632852 4.66e-05 17_[-1(5.39e-08)]_59 chrXIV:715974-716622 2.43e-01 100 chrXIV:725748-726345 9.40e-01 100 chrXIV:783838-784317 5.66e-01 100 chrXV:79753-80107 9.23e-01 100 chrXV:80409-81152 4.21e-01 100 chrXV:87446-88126 1.00e+00 100 chrXV:92800-94774 8.59e-01 100 chrXV:110844-111178 8.53e-12 11_[+1(4.13e-09)]_2_[-3(2.43e-07)]_\ 33 chrXV:113418-113878 7.71e-01 100 chrXV:161142-161656 7.46e-01 100 chrXV:168037-168403 7.74e-01 100 chrXV:216315-216623 6.79e-01 100 chrXV:226591-226808 3.83e-04 4_[-2(2.38e-07)]_75 chrXV:228008-228622 8.18e-06 72_[+2(5.79e-10)]_7 chrXV:253133-253652 1.16e-01 100 chrXV:274527-274970 1.01e-01 100 chrXV:281890-282547 6.90e-12 2_[+2(2.38e-07)]_8_[-1(4.66e-11)]_\ 45 chrXV:288077-288390 5.48e-09 15_[+2(6.75e-07)]_26_[-1(2.80e-08)]_\ 14 chrXV:300906-301633 5.42e-01 100 chrXV:340133-340569 1.26e-08 8_[+1(5.83e-08)]_10_[-2(1.37e-06)]_\ 37 chrXV:353934-354285 1.04e-06 26_[-2(4.82e-10)]_53 chrXV:438373-439460 3.03e-01 100 chrXV:444627-446176 4.38e-01 100 chrXV:446712-447444 5.49e-01 100 chrXV:464303-464649 9.04e-05 30_[+2(1.86e-07)]_49 chrXV:464871-465260 5.87e-01 100 chrXV:472071-472886 1.40e-01 100 chrXV:487432-487731 5.57e-01 100 chrXV:505154-505455 8.50e-01 100 chrXV:571676-572147 4.03e-01 100 chrXV:594045-594601 9.73e-01 100 chrXV:619251-620880 6.91e-01 100 chrXV:641401-642549 3.09e-01 100 chrXV:663474-664085 3.46e-01 100 chrXV:678201-679132 7.28e-01 100 chrXV:710073-710618 1.00e+00 100 chrXV:723034-724775 9.11e-01 100 chrXV:759088-759498 7.70e-01 100 chrXV:779743-780930 8.82e-01 100 chrXV:854018-854805 1.12e-01 100 chrXV:866548-866897 2.36e-01 100 chrXV:877177-877616 3.37e-01 100 chrXV:896631-898392 2.66e-01 100 chrXV:900226-901251 4.67e-01 100 chrXV:968155-968363 2.26e-01 100 chrXV:976381-976703 9.58e-01 100 chrXV:978869-979095 3.72e-01 100 chrXV:979862-981438 9.82e-01 100 chrXV:1003913-1005020 8.80e-01 100 chrXV:1025755-1026017 5.68e-01 100 chrXV:1027888-1029075 5.77e-01 100 chrXVI:55854-56352 3.19e-01 100 chrXVI:76219-76713 1.57e-01 100 chrXVI:172906-174067 9.72e-01 100 chrXVI:188654-188897 1.23e-02 17_[+2(2.00e-05)]_62 chrXVI:189046-189208 5.60e-01 100 chrXVI:193487-194609 5.83e-01 100 chrXVI:209986-210447 5.84e-14 36_[+1(1.19e-10)]_2_[-3(6.43e-11)]_\ 8 chrXVI:210588-210725 9.92e-01 100 chrXVI:210967-211111 1.81e-01 100 chrXVI:280703-281894 4.00e-01 100 chrXVI:282052-282964 6.69e-01 100 chrXVI:297009-298468 7.64e-02 100 chrXVI:302673-302941 9.20e-01 100 chrXVI:303074-304036 1.40e-01 100 chrXVI:338767-339124 4.04e-01 100 chrXVI:378706-378970 1.66e-01 100 chrXVI:404934-406057 8.39e-01 100 chrXVI:406214-408105 1.61e-01 100 chrXVI:432503-434400 7.36e-01 100 chrXVI:435652-436172 2.43e-06 41_[+1(3.91e-08)]_2_[-3(6.25e-05)]_\ 3 chrXVI:520197-520494 3.06e-01 100 chrXVI:559989-560435 1.15e-05 46_[+1(4.59e-09)]_30 chrXVI:571655-572470 3.77e-01 100 chrXVI:581904-582491 8.53e-01 100 chrXVI:622321-622818 1.41e-05 31_[+1(4.59e-09)]_45 chrXVI:645463-646215 6.01e-02 31_[+3(8.79e-05)]_39 chrXVI:689388-689843 2.69e-08 6_[+2(8.18e-10)]_19_[-1(4.03e-05)]_\ 30 chrXVI:699777-700647 6.34e-02 100 chrXVI:718374-719367 9.25e-01 100 chrXVI:731963-732267 6.54e-01 100 chrXVI:744119-744523 1.03e-10 17_[+3(4.06e-10)]_2_[-1(1.61e-07)]_\ 27 chrXVI:768984-769447 3.01e-06 52_[+1(2.99e-09)]_24 chrXVI:775692-776031 9.18e-01 100 chrXVI:794499-794769 9.99e-01 100 chrXVI:810572-810886 6.88e-11 3_[+2(5.79e-10)]_11_[-1(5.39e-08)]_\ 41 chrXVI:819344-819882 3.75e-07 4_[-1(4.66e-11)]_72 chrXVI:856799-857071 2.10e-13 23_[+2(3.32e-09)]_10_[-1(2.47e-10)]_\ 22 chrXVI:860207-860652 6.90e-12 6_[+2(2.38e-07)]_8_[-1(4.66e-11)]_\ 41 chrXVI:879442-880510 8.07e-01 100 chrXVI:919190-920385 4.44e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************