******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YKL222C/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71791-73273 1.0000 100 chrI:81841-82309 1.0000 100 chrI:138936-139367 1.0000 100 chrI:166169-166604 1.0000 100 chrII:6842-7087 1.0000 100 chrII:9453-9854 1.0000 100 chrII:36226-36769 1.0000 100 chrII:44938-45399 1.0000 100 chrII:45555-46886 1.0000 100 chrII:59824-61494 1.0000 100 chrII:88961-90216 1.0000 100 chrII:165107-165398 1.0000 100 chrII:167896-168213 1.0000 100 chrII:181017-181680 1.0000 100 chrII:197164-197856 1.0000 100 chrII:226970-227344 1.0000 100 chrII:266202-266906 1.0000 100 chrII:326536-327202 1.0000 100 chrII:332115-332935 1.0000 100 chrII:333297-334079 1.0000 100 chrII:347408-348060 1.0000 100 chrII:350600-351040 1.0000 100 chrII:405670-406200 1.0000 100 chrII:415485-416137 1.0000 100 chrII:476887-477770 1.0000 100 chrII:592860-593288 1.0000 100 chrII:604080-607129 1.0000 100 chrII:644941-645409 1.0000 100 chrIII:69-1583 1.0000 100 chrIII:14456-15668 1.0000 100 chrIII:57381-59514 1.0000 100 chrIII:82454-82649 1.0000 100 chrIII:90780-91089 1.0000 100 chrIII:123381-123804 1.0000 100 chrIII:127541-127905 1.0000 100 chrIII:142435-143003 1.0000 100 chrIII:149718-150210 1.0000 100 chrIII:151041-151586 1.0000 100 chrIII:163438-163899 1.0000 100 chrIII:168079-168566 1.0000 100 chrIII:178273-178783 1.0000 100 chrIII:227743-228212 1.0000 100 chrIII:295330-295986 1.0000 100 chrIII:308600-308981 1.0000 100 chrIII:316236-316596 1.0000 100 chrIV:83320-84051 1.0000 100 chrIV:117142-118187 1.0000 100 chrIV:129277-131013 1.0000 100 chrIV:206521-210565 1.0000 100 chrIV:216592-218043 1.0000 100 chrIV:221096-221294 1.0000 100 chrIV:221603-222353 1.0000 100 chrIV:229305-230509 1.0000 100 chrIV:306215-309378 1.0000 100 chrIV:321644-321980 1.0000 100 chrIV:340956-342243 1.0000 100 chrIV:358026-358460 1.0000 100 chrIV:359090-359905 1.0000 100 chrIV:410192-410812 1.0000 100 chrIV:411238-411671 1.0000 100 chrIV:434004-435035 1.0000 100 chrIV:437536-438063 1.0000 100 chrIV:488456-488997 1.0000 100 chrIV:490247-492551 1.0000 100 chrIV:519654-519961 1.0000 100 chrIV:520734-521171 1.0000 100 chrIV:538870-539292 1.0000 100 chrIV:568691-569229 1.0000 100 chrIV:579003-580678 1.0000 100 chrIV:619747-620251 1.0000 100 chrIV:667643-668579 1.0000 100 chrIV:802572-802843 1.0000 100 chrIV:835847-837968 1.0000 100 chrIV:884250-884655 1.0000 100 chrIV:945778-946692 1.0000 100 chrIV:992674-993219 1.0000 100 chrIV:1013511-1013998 1.0000 100 chrIV:1016953-1017510 1.0000 100 chrIV:1075284-1075756 1.0000 100 chrIV:1094992-1095718 1.0000 100 chrIV:1150697-1151172 1.0000 100 chrIV:1175588-1176071 1.0000 100 chrIV:1201524-1202002 1.0000 100 chrIV:1300829-1301403 1.0000 100 chrIV:1305378-1305825 1.0000 100 chrIV:1351997-1353314 1.0000 100 chrIV:1354301-1356038 1.0000 100 chrIV:1359420-1360041 1.0000 100 chrIV:1401186-1401958 1.0000 100 chrIV:1450770-1451997 1.0000 100 chrIV:1461180-1461850 1.0000 100 chrIV:1489246-1489924 1.0000 100 chrIX:67782-69550 1.0000 100 chrIX:99359-100131 1.0000 100 chrIX:174845-175597 1.0000 100 chrIX:183292-183725 1.0000 100 chrIX:197125-198061 1.0000 100 chrIX:210660-210955 1.0000 100 chrIX:248535-249015 1.0000 100 chrIX:254185-254580 1.0000 100 chrIX:257353-257758 1.0000 100 chrIX:299962-300517 1.0000 100 chrIX:315989-317637 1.0000 100 chrIX:324163-324587 1.0000 100 chrIX:325517-326071 1.0000 100 chrIX:336042-336636 1.0000 100 chrIX:370255-370607 1.0000 100 chrIX:390053-390879 1.0000 100 chrV:6186-6564 1.0000 100 chrV:52491-53290 1.0000 100 chrV:53453-54311 1.0000 100 chrV:61174-62128 1.0000 100 chrV:67163-68790 1.0000 100 chrV:69110-69311 1.0000 100 chrV:85109-86258 1.0000 100 chrV:86420-87088 1.0000 100 chrV:99837-100284 1.0000 100 chrV:117602-118302 1.0000 100 chrV:130844-131371 1.0000 100 chrV:135165-136053 1.0000 100 chrV:138475-140925 1.0000 100 chrV:176883-177446 1.0000 100 chrV:207355-207547 1.0000 100 chrV:249762-250539 1.0000 100 chrV:270327-270675 1.0000 100 chrV:288178-288744 1.0000 100 chrV:305809-307415 1.0000 100 chrV:311736-312303 1.0000 100 chrV:354790-355299 1.0000 100 chrV:362022-363259 1.0000 100 chrV:396038-397971 1.0000 100 chrV:423074-424366 1.0000 100 chrV:431039-431928 1.0000 100 chrV:434389-435155 1.0000 100 chrV:435582-435944 1.0000 100 chrV:438469-438925 1.0000 100 chrV:441783-442657 1.0000 100 chrV:443062-443340 1.0000 100 chrV:469259-469850 1.0000 100 chrV:486993-487640 1.0000 100 chrV:492229-492429 1.0000 100 chrV:551007-551592 1.0000 100 chrVI:4520-4770 1.0000 100 chrVI:64225-65379 1.0000 100 chrVI:95414-95911 1.0000 100 chrVI:101366-101714 1.0000 100 chrVI:137139-137792 1.0000 100 chrVI:157897-158235 1.0000 100 chrVI:162025-162402 1.0000 100 chrVI:167238-167711 1.0000 100 chrVI:180694-181266 1.0000 100 chrVI:191212-191759 1.0000 100 chrVI:210325-210907 1.0000 100 chrVI:220305-222253 1.0000 100 chrVI:222720-224708 1.0000 100 chrVI:226406-226982 1.0000 100 chrVII:110273-110787 1.0000 100 chrVII:115258-115721 1.0000 100 chrVII:122043-122548 1.0000 100 chrVII:148200-149584 1.0000 100 chrVII:185489-185934 1.0000 100 chrVII:205174-205810 1.0000 100 chrVII:254142-254722 1.0000 100 chrVII:277012-278686 1.0000 100 chrVII:287176-287685 1.0000 100 chrVII:310450-312176 1.0000 100 chrVII:319242-320199 1.0000 100 chrVII:328387-328995 1.0000 100 chrVII:345909-346591 1.0000 100 chrVII:364892-366640 1.0000 100 chrVII:370741-370977 1.0000 100 chrVII:371169-371491 1.0000 100 chrVII:401163-401619 1.0000 100 chrVII:405463-405857 1.0000 100 chrVII:411723-412579 1.0000 100 chrVII:422895-423350 1.0000 100 chrVII:438503-439837 1.0000 100 chrVII:440544-441014 1.0000 100 chrVII:479243-482687 1.0000 100 chrVII:519401-520580 1.0000 100 chrVII:531389-531812 1.0000 100 chrVII:533841-535204 1.0000 100 chrVII:541710-542157 1.0000 100 chrVII:544416-544878 1.0000 100 chrVII:555137-556682 1.0000 100 chrVII:561468-561725 1.0000 100 chrVII:648787-649343 1.0000 100 chrVII:661527-661977 1.0000 100 chrVII:700412-701164 1.0000 100 chrVII:706936-707272 1.0000 100 chrVII:726391-728377 1.0000 100 chrVII:730956-731402 1.0000 100 chrVII:736170-736687 1.0000 100 chrVII:738918-739504 1.0000 100 chrVII:774143-774640 1.0000 100 chrVII:779368-779761 1.0000 100 chrVII:788147-788754 1.0000 100 chrVII:794083-794574 1.0000 100 chrVII:823348-823713 1.0000 100 chrVII:828419-828988 1.0000 100 chrVII:845361-846002 1.0000 100 chrVII:856730-857683 1.0000 100 chrVII:876175-878076 1.0000 100 chrVII:878588-879106 1.0000 100 chrVII:882784-883877 1.0000 100 chrVII:919996-920244 1.0000 100 chrVII:930843-931155 1.0000 100 chrVII:1000332-1000604 1.0000 100 chrVII:1004039-1004426 1.0000 100 chrVIII:34535-35121 1.0000 100 chrVIII:62533-63046 1.0000 100 chrVIII:74908-75914 1.0000 100 chrVIII:103380-105378 1.0000 100 chrVIII:115872-116298 1.0000 100 chrVIII:125889-127482 1.0000 100 chrVIII:132796-133359 1.0000 100 chrVIII:134070-134988 1.0000 100 chrVIII:144452-146788 1.0000 100 chrVIII:147866-149253 1.0000 100 chrVIII:174996-176095 1.0000 100 chrVIII:237748-238087 1.0000 100 chrVIII:296739-297272 1.0000 100 chrVIII:358307-358941 1.0000 100 chrVIII:381502-383351 1.0000 100 chrVIII:388688-389226 1.0000 100 chrVIII:451321-453000 1.0000 100 chrVIII:466906-467313 1.0000 100 chrVIII:475490-475912 1.0000 100 chrVIII:505787-506229 1.0000 100 chrVIII:555077-555523 1.0000 100 chrVIII:555685-556458 1.0000 100 chrVIII:556857-557190 1.0000 100 chrX:59007-59371 1.0000 100 chrX:73354-76512 1.0000 100 chrX:89886-90471 1.0000 100 chrX:115734-116231 1.0000 100 chrX:156171-157860 1.0000 100 chrX:160022-160253 1.0000 100 chrX:197102-197528 1.0000 100 chrX:204530-205078 1.0000 100 chrX:233393-234123 1.0000 100 chrX:265304-265819 1.0000 100 chrX:354159-354489 1.0000 100 chrX:355202-355919 1.0000 100 chrX:374190-374833 1.0000 100 chrX:378123-378597 1.0000 100 chrX:390924-391333 1.0000 100 chrX:391802-392112 1.0000 100 chrX:396560-397054 1.0000 100 chrX:414744-415243 1.0000 100 chrX:415698-416293 1.0000 100 chrX:422715-423626 1.0000 100 chrX:424276-424739 1.0000 100 chrX:517675-518097 1.0000 100 chrX:523769-524426 1.0000 100 chrX:531598-532204 1.0000 100 chrX:538435-538761 1.0000 100 chrX:540957-541791 1.0000 100 chrX:542758-543258 1.0000 100 chrX:545386-545768 1.0000 100 chrX:607639-608178 1.0000 100 chrX:617683-618517 1.0000 100 chrX:651214-651638 1.0000 100 chrX:651887-653075 1.0000 100 chrX:690579-690862 1.0000 100 chrX:702403-702642 1.0000 100 chrX:702942-703676 1.0000 100 chrX:745033-745749 1.0000 100 chrXI:780-1094 1.0000 100 chrXI:3841-7404 1.0000 100 chrXI:46007-46437 1.0000 100 chrXI:46706-47026 1.0000 100 chrXI:67749-68056 1.0000 100 chrXI:74414-74868 1.0000 100 chrXI:84012-84442 1.0000 100 chrXI:99732-99966 1.0000 100 chrXI:108600-110146 1.0000 100 chrXI:140816-141461 1.0000 100 chrXI:157899-159563 1.0000 100 chrXI:162430-162690 1.0000 100 chrXI:202318-203267 1.0000 100 chrXI:219581-220129 1.0000 100 chrXI:259143-259824 1.0000 100 chrXI:302704-303493 1.0000 100 chrXI:307945-308453 1.0000 100 chrXI:312840-314001 1.0000 100 chrXI:326421-327561 1.0000 100 chrXI:334239-334980 1.0000 100 chrXI:379459-379925 1.0000 100 chrXI:382185-382479 1.0000 100 chrXI:430805-432287 1.0000 100 chrXI:457590-458971 1.0000 100 chrXI:490742-491227 1.0000 100 chrXI:512135-513518 1.0000 100 chrXI:517640-518173 1.0000 100 chrXI:578758-579305 1.0000 100 chrXI:614174-614425 1.0000 100 chrXI:618748-619282 1.0000 100 chrXI:666498-666800 1.0000 100 chrXII:52-250 1.0000 100 chrXII:5573-5811 1.0000 100 chrXII:47815-49225 1.0000 100 chrXII:92411-92724 1.0000 100 chrXII:108616-108943 1.0000 100 chrXII:167712-168268 1.0000 100 chrXII:198364-199614 1.0000 100 chrXII:214691-215070 1.0000 100 chrXII:232167-234216 1.0000 100 chrXII:241621-242034 1.0000 100 chrXII:261088-263956 1.0000 100 chrXII:282587-283586 1.0000 100 chrXII:366021-366506 1.0000 100 chrXII:369379-370227 1.0000 100 chrXII:370623-370908 1.0000 100 chrXII:374190-374668 1.0000 100 chrXII:424180-424491 1.0000 100 chrXII:426893-427428 1.0000 100 chrXII:448507-448959 1.0000 100 chrXII:459586-460748 1.0000 100 chrXII:498257-499703 1.0000 100 chrXII:521474-522458 1.0000 100 chrXII:592362-592721 1.0000 100 chrXII:605165-605638 1.0000 100 chrXII:628179-628646 1.0000 100 chrXII:636741-639922 1.0000 100 chrXII:645861-646043 1.0000 100 chrXII:656830-657214 1.0000 100 chrXII:673521-674575 1.0000 100 chrXII:687660-687910 1.0000 100 chrXII:710687-710898 1.0000 100 chrXII:713133-713643 1.0000 100 chrXII:732006-732305 1.0000 100 chrXII:734578-735002 1.0000 100 chrXII:780798-781888 1.0000 100 chrXII:783986-784520 1.0000 100 chrXII:793721-795221 1.0000 100 chrXII:795670-797447 1.0000 100 chrXII:797614-797786 1.0000 100 chrXII:818503-820343 1.0000 100 chrXII:837905-839395 1.0000 100 chrXII:855832-857312 1.0000 100 chrXII:857513-857732 1.0000 100 chrXII:875152-876337 1.0000 100 chrXII:897156-898976 1.0000 100 chrXII:903429-903760 1.0000 100 chrXII:921728-923150 1.0000 100 chrXII:932042-932546 1.0000 100 chrXII:962815-963289 1.0000 100 chrXII:975801-976154 1.0000 100 chrXII:1017514-1019588 1.0000 100 chrXII:1028189-1028601 1.0000 100 chrXII:1039122-1039421 1.0000 100 chrXII:1051907-1052229 1.0000 100 chrXII:1064004-1064182 1.0000 100 chrXIII:91526-92090 1.0000 100 chrXIII:131520-132107 1.0000 100 chrXIII:145679-147188 1.0000 100 chrXIII:163521-164277 1.0000 100 chrXIII:168268-169020 1.0000 100 chrXIII:195944-196309 1.0000 100 chrXIII:222693-224519 1.0000 100 chrXIII:225096-225964 1.0000 100 chrXIII:259007-259494 1.0000 100 chrXIII:290585-291120 1.0000 100 chrXIII:296734-298926 1.0000 100 chrXIII:302859-303127 1.0000 100 chrXIII:320968-321678 1.0000 100 chrXIII:352098-352501 1.0000 100 chrXIII:362933-364095 1.0000 100 chrXIII:372190-372769 1.0000 100 chrXIII:378886-379625 1.0000 100 chrXIII:420342-420860 1.0000 100 chrXIII:463427-463857 1.0000 100 chrXIII:480410-481003 1.0000 100 chrXIII:498758-501097 1.0000 100 chrXIII:504646-505213 1.0000 100 chrXIII:550007-552375 1.0000 100 chrXIII:572608-573238 1.0000 100 chrXIII:586405-586900 1.0000 100 chrXIII:650842-651882 1.0000 100 chrXIII:671922-674738 1.0000 100 chrXIII:731994-733453 1.0000 100 chrXIII:747551-748164 1.0000 100 chrXIII:753039-755155 1.0000 100 chrXIII:768176-768452 1.0000 100 chrXIII:808081-808524 1.0000 100 chrXIII:837714-838173 1.0000 100 chrXIV:61950-64406 1.0000 100 chrXIV:95981-96467 1.0000 100 chrXIV:102573-103588 1.0000 100 chrXIV:104608-105096 1.0000 100 chrXIV:241378-242161 1.0000 100 chrXIV:302607-303829 1.0000 100 chrXIV:330756-331405 1.0000 100 chrXIV:374707-375082 1.0000 100 chrXIV:442853-444826 1.0000 100 chrXIV:493949-495754 1.0000 100 chrXIV:499166-499492 1.0000 100 chrXIV:499670-500684 1.0000 100 chrXIV:518664-519137 1.0000 100 chrXIV:546551-547443 1.0000 100 chrXIV:560445-560864 1.0000 100 chrXIV:568051-568499 1.0000 100 chrXIV:569609-570061 1.0000 100 chrXIV:602068-602573 1.0000 100 chrXIV:631671-632018 1.0000 100 chrXIV:632493-632886 1.0000 100 chrXIV:725668-726361 1.0000 100 chrXIV:783729-784327 1.0000 100 chrXV:79715-80173 1.0000 100 chrXV:80358-81482 1.0000 100 chrXV:92805-94804 1.0000 100 chrXV:109554-110659 1.0000 100 chrXV:110855-111204 1.0000 100 chrXV:113484-113885 1.0000 100 chrXV:161104-161734 1.0000 100 chrXV:167969-168498 1.0000 100 chrXV:216274-216713 1.0000 100 chrXV:226455-226871 1.0000 100 chrXV:228079-228555 1.0000 100 chrXV:252899-253654 1.0000 100 chrXV:253816-254701 1.0000 100 chrXV:274440-274985 1.0000 100 chrXV:281953-282913 1.0000 100 chrXV:287156-288413 1.0000 100 chrXV:300886-301919 1.0000 100 chrXV:302126-302355 1.0000 100 chrXV:340140-340618 1.0000 100 chrXV:353889-354320 1.0000 100 chrXV:438417-439478 1.0000 100 chrXV:444648-446142 1.0000 100 chrXV:464276-464816 1.0000 100 chrXV:487437-487763 1.0000 100 chrXV:505032-505521 1.0000 100 chrXV:571693-572284 1.0000 100 chrXV:594229-594638 1.0000 100 chrXV:619637-621278 1.0000 100 chrXV:639173-639441 1.0000 100 chrXV:663042-664079 1.0000 100 chrXV:678218-679318 1.0000 100 chrXV:710060-710484 1.0000 100 chrXV:723026-724650 1.0000 100 chrXV:779669-780904 1.0000 100 chrXV:854052-854814 1.0000 100 chrXV:866490-867958 1.0000 100 chrXV:881792-882360 1.0000 100 chrXV:901411-901634 1.0000 100 chrXV:968114-968476 1.0000 100 chrXV:976376-976668 1.0000 100 chrXV:978813-979174 1.0000 100 chrXV:979736-981395 1.0000 100 chrXV:1003976-1004441 1.0000 100 chrXV:1025702-1026081 1.0000 100 chrXV:1027953-1029412 1.0000 100 chrXVI:55880-56350 1.0000 100 chrXVI:75588-77101 1.0000 100 chrXVI:172838-173856 1.0000 100 chrXVI:188592-189249 1.0000 100 chrXVI:210008-210574 1.0000 100 chrXVI:279945-280221 1.0000 100 chrXVI:281589-282971 1.0000 100 chrXVI:302628-304006 1.0000 100 chrXVI:338710-339184 1.0000 100 chrXVI:340066-340321 1.0000 100 chrXVI:340537-340778 1.0000 100 chrXVI:378645-379015 1.0000 100 chrXVI:406183-406651 1.0000 100 chrXVI:432586-434391 1.0000 100 chrXVI:435669-436199 1.0000 100 chrXVI:519998-520550 1.0000 100 chrXVI:559986-560473 1.0000 100 chrXVI:571946-572530 1.0000 100 chrXVI:581849-582333 1.0000 100 chrXVI:622308-622843 1.0000 100 chrXVI:689345-689881 1.0000 100 chrXVI:699498-700691 1.0000 100 chrXVI:731897-732639 1.0000 100 chrXVI:744079-744628 1.0000 100 chrXVI:768383-769483 1.0000 100 chrXVI:775611-776063 1.0000 100 chrXVI:794451-795161 1.0000 100 chrXVI:810573-811385 1.0000 100 chrXVI:819314-820351 1.0000 100 chrXVI:856806-857107 1.0000 100 chrXVI:860136-860691 1.0000 100 chrXVI:866509-866745 1.0000 100 chrXVI:880105-880562 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YKL222C/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YKL222C/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YKL222C/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 487 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 48700 N= 487 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.299 C 0.201 G 0.201 T 0.299 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YKL222C/background): A 0.309 C 0.191 G 0.191 T 0.309 ******************************************************************************** ******************************************************************************** MOTIF AGRTCVBSGGTTCGAYYCCSV MEME-1 width = 21 sites = 96 llr = 1607 E-value = 2.6e-319 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGAYYCCSV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6132:3:12::::2a1::::3 pos.-specific C 12118543::::a::25a763 probability G 2761:2367a:::8:2:::34 matrix T :::63:31::aa:::45:21: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 **** * * Relative 1.4 * ****** * Entropy 1.2 * ****** * (24.1 bits) 1.0 ** * ******* **** 0.7 ** * ******** ***** 0.5 *** *********** ***** 0.2 ********************* 0.0 --------------------- Multilevel AGGTCCCGGGTTCGATTCCCG consensus G A TAGCA A CC TGC sequence GT G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGAYYCCSV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631671-632018 - 61 2.86e-13 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCG GCTCGCCCCC chrIII:123381-123804 - 44 2.86e-13 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCG GCTCGCCCCA chrXVI:860136-860691 + 57 8.32e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrXVI:581849-582333 + 64 8.32e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrXV:226455-226871 - 7 8.32e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGC chrX:531598-532204 + 18 8.32e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrX:414744-415243 + 66 8.32e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrVII:930843-931155 - 13 8.32e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAT chrVII:845361-846002 + 59 8.32e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAA chrVII:185489-185934 - 62 8.32e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrVII:122043-122548 + 67 8.32e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrVI:226406-226982 - 53 8.32e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrVI:180694-181266 - 53 8.32e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrV:435582-435944 - 48 8.32e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrIX:299962-300517 - 48 8.32e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrIV:1201524-1202002 + 80 8.32e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC chrIII:151041-151586 - 30 8.32e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrIII:142435-143003 - 41 8.32e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAT chrXII:214691-215070 - 62 1.00e-10 TGCAAGGAAG AGGTCATCGGTTCGATTCCGG TTGCGTCCAT chrV:311736-312303 - 63 1.00e-10 TGCAAGGAAG AGGTCATCGGTTCGATTCCGG TTGCGTCCAA chrVIII:475490-475912 - 64 1.42e-10 CACACGGCAA AGGTCCCGAGTTCGATCCTCG GTTGGAACAT chrIV:1075284-1075756 - 11 1.42e-10 CACACGGCAA AGGTCCCGAGTTCGATCCTCG GTTGGAACAT chrXVI:880105-880562 - 22 2.76e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXII:1051907-1052229 - 62 2.76e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrVII:738918-739504 + 5 2.76e-10 GCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrV:551007-551592 - 45 2.76e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAA chrV:443062-443340 - 60 2.76e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrII:197164-197856 + 78 2.76e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TA chrXVI:856806-857107 + 39 6.94e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAT chrXIII:290585-291120 + 41 6.94e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrX:197102-197528 - 57 6.94e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrX:115734-116231 - 16 6.94e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrVII:774143-774640 + 51 6.94e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrVII:541710-542157 + 9 6.94e-10 TCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:486993-487640 - 74 6.94e-10 ACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:176883-177446 + 27 6.94e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrIX:370255-370607 + 78 6.94e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GT chrIV:1016953-1017510 - 35 6.94e-10 TCTCACCGTG GAGACCGGGGTTCGACTCCCC GCTTCGGAGT chrXIV:95981-96467 - 76 8.03e-10 GGTG GGGACACGGGTTCGATTCTCG TACCGCTCAA chrXV:464276-464816 + 26 1.84e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA GCTCGCCCCT chrXIII:195944-196309 - 1 1.84e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA chrX:538435-538761 + 49 1.84e-09 CCTAAGGAGA AGACTGCGGGTTCGAGTCCCG TACGGAACGT chrXIII:586405-586900 - 43 3.07e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIII:420342-420860 - 46 3.07e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIII:372190-372769 - 25 3.07e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIII:131520-132107 - 71 3.07e-09 CTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrXI:307945-308453 - 4 3.07e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCG chrX:374190-374833 - 54 3.07e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrVII:828419-828988 - 79 3.07e-09 A AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrVII:823348-823713 + 46 3.07e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrVII:736170-736687 + 4 3.07e-09 AGA AGATTATGGGTTCGACCCCCA TCGTGAGTGT chrIV:568691-569229 + 14 3.07e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrII:405670-406200 + 35 3.07e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrXI:578758-579305 + 50 5.61e-09 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrV:130844-131371 - 34 5.61e-09 TTTGATCCGA ACAACCCCGGTTCGAATCCGG GTAAGACCTA chrIII:168079-168566 - 38 5.61e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTT chrXIII:808081-808524 - 3 3.03e-08 TCTGATCCGA ACAACCCCAGTTCGAATCCGG GT chrIV:884250-884655 + 62 3.33e-08 AGCAACGCGA CCGTCGTGGGTTCAAACCCCA CCTCGAGCAC chrXV:571693-572284 + 62 3.66e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXIII:463427-463857 + 4 3.66e-08 TGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXII:426893-427428 + 64 3.66e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrX:204530-205078 + 23 3.66e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrIX:336042-336636 - 69 3.66e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXIV:104608-105096 + 46 4.01e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrIX:325517-326071 + 47 4.01e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAA chrX:542758-543258 - 7 4.39e-08 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGG chrX:354159-354489 + 29 4.39e-08 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrVI:210325-210907 - 62 4.39e-08 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrVI:167238-167711 + 72 4.39e-08 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAG chrXVI:622308-622843 - 24 5.25e-08 AGTTATCTGG AGGTCCTGTGTTCGATCCACA GAATTCGCAT chrXVI:559986-560473 - 28 5.25e-08 AGTTATCTGG AGGTCCTGTGTTCGATCCACA GAATTCGCAT chrIV:1094992-1095718 - 74 5.25e-08 ATCTGG AGGTCCTGTGTTCGATCCACA GAGTTCGCAT chrII:36226-36769 + 12 5.25e-08 AGTCATCTGG AGGTCCTGTGTTCGATCCACA GAATTCGCAT chrXIV:632493-632886 + 4 7.40e-08 GCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXII:975801-976154 - 65 7.40e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXI:74414-74868 + 77 7.40e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTG chrVII:730956-731402 + 52 7.40e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrVI:137139-137792 - 80 7.40e-08 . AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXII:374190-374668 + 19 1.11e-07 ACGAACCAGA AGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrXI:490742-491227 + 77 1.11e-07 ACGAACCAGA AGATTCCAGGTTCAAGTCCTG GCG chrIV:619747-620251 - 29 1.11e-07 ACGAACCAGA AGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrXIII:572608-573238 - 19 1.30e-07 CATAATCTGA AGGTCGAGAGTTCGAACCTCC CCTGGAGCAC chrXVI:435669-436199 - 18 2.33e-07 GCAAATCTGT TGGTCCTTAGTTCGATCCTGA GTGCGAGCTT chrVII:706936-707272 - 63 2.33e-07 GCAAATCTGT TGGTCCTTAGTTCGATCCTGA GTGCGAGCTT chrXVI:744079-744628 + 23 2.49e-07 TGTAATGCAA AGGTCGTTAGTTCAATTCTGA CAGGTGGCAA chrVII:1004039-1004426 + 76 2.49e-07 TGTAATGCAA AGGTCGTTAGTTCAATTCTGA CAGG chrXII:167712-168268 - 13 4.74e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrVIII:132796-133359 - 8 4.74e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTTGT chrIV:437536-438063 + 75 4.74e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTT chrII:226970-227344 + 20 4.74e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrXI:312840-314001 - 40 7.09e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAT chrVIII:62533-63046 + 58 7.09e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAT chrIV:519654-519961 + 40 8.33e-07 TGGACGGTTG TCCGCGCGAGTTCGAACCTCG CATCCTTCAA chrII:9453-9854 + 34 8.33e-07 TGGACGGTTG TCCGCGCGAGTTCGAACCTCG CATCCTTCAG chrXVI:689345-689881 + 54 1.63e-06 TTGGGCTCTG CCCGCGCTGGTTCAAATCCTG CTGGTGTCGT chrV:288178-288744 - 41 1.63e-06 TTGGGCTCTG CCCGCGCTGGTTCAAATCCTG CTGGTGTCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGAYYCCSV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631671-632018 2.9e-13 60_[-1]_19 chrIII:123381-123804 2.9e-13 43_[-1]_36 chrXVI:860136-860691 8.3e-11 56_[+1]_23 chrXVI:581849-582333 8.3e-11 63_[+1]_16 chrXV:226455-226871 8.3e-11 6_[-1]_73 chrX:531598-532204 8.3e-11 17_[+1]_62 chrX:414744-415243 8.3e-11 65_[+1]_14 chrVII:930843-931155 8.3e-11 12_[-1]_67 chrVII:845361-846002 8.3e-11 58_[+1]_21 chrVII:185489-185934 8.3e-11 61_[-1]_18 chrVII:122043-122548 8.3e-11 66_[+1]_13 chrVI:226406-226982 8.3e-11 52_[-1]_27 chrVI:180694-181266 8.3e-11 52_[-1]_27 chrV:435582-435944 8.3e-11 47_[-1]_32 chrIX:299962-300517 8.3e-11 47_[-1]_32 chrIV:1201524-1202002 8.3e-11 79_[+1] chrIII:151041-151586 8.3e-11 29_[-1]_50 chrIII:142435-143003 8.3e-11 40_[-1]_39 chrXII:214691-215070 1e-10 61_[-1]_18 chrV:311736-312303 1e-10 62_[-1]_17 chrVIII:475490-475912 1.4e-10 63_[-1]_16 chrIV:1075284-1075756 1.4e-10 10_[-1]_69 chrXVI:880105-880562 2.8e-10 21_[-1]_58 chrXII:1051907-1052229 2.8e-10 61_[-1]_18 chrVII:738918-739504 2.8e-10 4_[+1]_75 chrV:551007-551592 2.8e-10 44_[-1]_35 chrV:443062-443340 2.8e-10 59_[-1]_20 chrII:197164-197856 2.8e-10 77_[+1]_2 chrXVI:856806-857107 6.9e-10 38_[+1]_41 chrXIII:290585-291120 6.9e-10 40_[+1]_39 chrX:197102-197528 6.9e-10 56_[-1]_23 chrX:115734-116231 6.9e-10 15_[-1]_64 chrVII:774143-774640 6.9e-10 50_[+1]_29 chrVII:541710-542157 6.9e-10 8_[+1]_71 chrV:486993-487640 6.9e-10 73_[-1]_6 chrV:176883-177446 6.9e-10 26_[+1]_53 chrIX:370255-370607 6.9e-10 77_[+1]_2 chrIV:1016953-1017510 6.9e-10 34_[-1]_45 chrXIV:95981-96467 8e-10 75_[-1]_4 chrXV:464276-464816 1.8e-09 25_[+1]_54 chrXIII:195944-196309 1.8e-09 [-1]_79 chrX:538435-538761 1.8e-09 48_[+1]_31 chrXIII:586405-586900 3.1e-09 42_[-1]_37 chrXIII:420342-420860 3.1e-09 45_[-1]_34 chrXIII:372190-372769 3.1e-09 24_[-1]_55 chrXIII:131520-132107 3.1e-09 70_[-1]_9 chrXI:307945-308453 3.1e-09 3_[-1]_76 chrX:374190-374833 3.1e-09 53_[-1]_26 chrVII:828419-828988 3.1e-09 78_[-1]_1 chrVII:823348-823713 3.1e-09 45_[+1]_34 chrVII:736170-736687 3.1e-09 3_[+1]_76 chrIV:568691-569229 3.1e-09 13_[+1]_66 chrII:405670-406200 3.1e-09 34_[+1]_45 chrXI:578758-579305 5.6e-09 49_[+1]_30 chrV:130844-131371 5.6e-09 33_[-1]_46 chrIII:168079-168566 5.6e-09 37_[-1]_42 chrXIII:808081-808524 3e-08 2_[-1]_77 chrIV:884250-884655 3.3e-08 61_[+1]_18 chrXV:571693-572284 3.7e-08 61_[+1]_18 chrXIII:463427-463857 3.7e-08 3_[+1]_76 chrXII:426893-427428 3.7e-08 63_[+1]_16 chrX:204530-205078 3.7e-08 22_[+1]_57 chrIX:336042-336636 3.7e-08 68_[-1]_11 chrXIV:104608-105096 4e-08 45_[+1]_34 chrIX:325517-326071 4e-08 46_[+1]_33 chrX:542758-543258 4.4e-08 6_[-1]_73 chrX:354159-354489 4.4e-08 28_[+1]_51 chrVI:210325-210907 4.4e-08 61_[-1]_18 chrVI:167238-167711 4.4e-08 71_[+1]_8 chrXVI:622308-622843 5.2e-08 23_[-1]_56 chrXVI:559986-560473 5.2e-08 27_[-1]_52 chrIV:1094992-1095718 5.2e-08 73_[-1]_6 chrII:36226-36769 5.2e-08 11_[+1]_68 chrXIV:632493-632886 7.4e-08 3_[+1]_76 chrXII:975801-976154 7.4e-08 64_[-1]_15 chrXI:74414-74868 7.4e-08 76_[+1]_3 chrVII:730956-731402 7.4e-08 51_[+1]_28 chrVI:137139-137792 7.4e-08 79_[-1] chrXII:374190-374668 1.1e-07 18_[+1]_61 chrXI:490742-491227 1.1e-07 76_[+1]_3 chrIV:619747-620251 1.1e-07 28_[-1]_51 chrXIII:572608-573238 1.3e-07 18_[-1]_61 chrXVI:435669-436199 2.3e-07 17_[-1]_62 chrVII:706936-707272 2.3e-07 62_[-1]_17 chrXVI:744079-744628 2.5e-07 22_[+1]_57 chrVII:1004039-1004426 2.5e-07 75_[+1]_4 chrXII:167712-168268 4.7e-07 12_[-1]_67 chrVIII:132796-133359 4.7e-07 7_[-1]_72 chrIV:437536-438063 4.7e-07 74_[+1]_5 chrII:226970-227344 4.7e-07 19_[+1]_60 chrXI:312840-314001 7.1e-07 39_[-1]_40 chrVIII:62533-63046 7.1e-07 57_[+1]_22 chrIV:519654-519961 8.3e-07 39_[+1]_40 chrII:9453-9854 8.3e-07 33_[+1]_46 chrXVI:689345-689881 1.6e-06 53_[+1]_26 chrV:288178-288744 1.6e-06 40_[-1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGAYYCCSV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRTCVBSGGTTCGAYYCCSV width=21 seqs=96 chrXIV:631671-632018 ( 61) AGGTCCCGGGTTCGAGTCCCG 1 chrIII:123381-123804 ( 44) AGGTCCCGGGTTCGAGTCCCG 1 chrXVI:860136-860691 ( 57) GGGCCCCCGGTTCGATTCCGG 1 chrXVI:581849-582333 ( 64) AGGTTAGGGGTTCGAGCCCCC 1 chrXV:226455-226871 ( 7) GGGCCCCCGGTTCGATTCCGG 1 chrX:531598-532204 ( 18) GGGCCCCCGGTTCGATTCCGG 1 chrX:414744-415243 ( 66) AGGTTAGGGGTTCGAGCCCCC 1 chrVII:930843-931155 ( 13) GGGCCCCCGGTTCGATTCCGG 1 chrVII:845361-846002 ( 59) GGGCCCCCGGTTCGATTCCGG 1 chrVII:185489-185934 ( 62) AGGTTAGGGGTTCGAGCCCCC 1 chrVII:122043-122548 ( 67) AGGTTAGGGGTTCGAGCCCCC 1 chrVI:226406-226982 ( 53) AGGTTAGGGGTTCGAGCCCCC 1 chrVI:180694-181266 ( 53) GGGCCCCCGGTTCGATTCCGG 1 chrV:435582-435944 ( 48) AGGTTAGGGGTTCGAGCCCCC 1 chrIX:299962-300517 ( 48) AGGTTAGGGGTTCGAGCCCCC 1 chrIV:1201524-1202002 ( 80) AGGTTAGGGGTTCGAGCCCCC 1 chrIII:151041-151586 ( 30) AGGTTAGGGGTTCGAGCCCCC 1 chrIII:142435-143003 ( 41) GGGCCCCCGGTTCGATTCCGG 1 chrXII:214691-215070 ( 62) AGGTCATCGGTTCGATTCCGG 1 chrV:311736-312303 ( 63) AGGTCATCGGTTCGATTCCGG 1 chrVIII:475490-475912 ( 64) AGGTCCCGAGTTCGATCCTCG 1 chrIV:1075284-1075756 ( 11) AGGTCCCGAGTTCGATCCTCG 1 chrXVI:880105-880562 ( 22) GGATCAGCGGTTCGATCCCGC 1 chrXII:1051907-1052229 ( 62) GGATCAGCGGTTCGATCCCGC 1 chrVII:738918-739504 ( 5) GGATCAGCGGTTCGATCCCGC 1 chrV:551007-551592 ( 45) GGATCAGCGGTTCGATCCCGC 1 chrV:443062-443340 ( 60) GGATCAGCGGTTCGATCCCGC 1 chrII:197164-197856 ( 78) GGATCAGCGGTTCGATCCCGC 1 chrXVI:856806-857107 ( 39) AGGTCTCCGGTTCGATTCCGG 1 chrXIII:290585-291120 ( 41) GAGACCGGGGTTCGACTCCCC 1 chrX:197102-197528 ( 57) AGGTCTCCGGTTCGATTCCGG 1 chrX:115734-116231 ( 16) GAGACCGGGGTTCGACTCCCC 1 chrVII:774143-774640 ( 51) AGGTCTCCGGTTCGATTCCGG 1 chrVII:541710-542157 ( 9) GAGACCGGGGTTCGACTCCCC 1 chrV:486993-487640 ( 74) GAGACCGGGGTTCGACTCCCC 1 chrV:176883-177446 ( 27) GAGACCGGGGTTCGACTCCCC 1 chrIX:370255-370607 ( 78) GAGACCGGGGTTCGACTCCCC 1 chrIV:1016953-1017510 ( 35) GAGACCGGGGTTCGACTCCCC 1 chrXIV:95981-96467 ( 76) GGGACACGGGTTCGATTCTCG 1 chrXV:464276-464816 ( 26) AGGCCCTGGGTTCAATTCCCA 1 chrXIII:195944-196309 ( 1) AGGCCCTGGGTTCAATTCCCA 1 chrX:538435-538761 ( 49) AGACTGCGGGTTCGAGTCCCG 1 chrXIII:586405-586900 ( 43) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:420342-420860 ( 46) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:372190-372769 ( 25) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:131520-132107 ( 71) AGATTATGGGTTCGACCCCCA 1 chrXI:307945-308453 ( 4) ACGTCCCCAGTTCGATCCTGG 1 chrX:374190-374833 ( 54) AGATTATGGGTTCGACCCCCA 1 chrVII:828419-828988 ( 79) AGATTATGGGTTCGACCCCCA 1 chrVII:823348-823713 ( 46) ACGTCCCCAGTTCGATCCTGG 1 chrVII:736170-736687 ( 4) AGATTATGGGTTCGACCCCCA 1 chrIV:568691-569229 ( 14) AGATTATGGGTTCGACCCCCA 1 chrII:405670-406200 ( 35) AGATTATGGGTTCGACCCCCA 1 chrXI:578758-579305 ( 50) ATGTCAGGGGTTCGAGCCCCC 1 chrV:130844-131371 ( 34) ACAACCCCGGTTCGAATCCGG 1 chrIII:168079-168566 ( 38) ACAACCCCGGTTCGAATCCGG 1 chrXIII:808081-808524 ( 3) ACAACCCCAGTTCGAATCCGG 1 chrIV:884250-884655 ( 62) CCGTCGTGGGTTCAAACCCCA 1 chrXV:571693-572284 ( 62) CAGATCGGGGTTCAATTCCCC 1 chrXIII:463427-463857 ( 4) CAGATCGGGGTTCAATTCCCC 1 chrXII:426893-427428 ( 64) CAGATCGGGGTTCAATTCCCC 1 chrX:204530-205078 ( 23) CAGATCGGGGTTCAATTCCCC 1 chrIX:336042-336636 ( 69) CAGATCGGGGTTCAATTCCCC 1 chrXIV:104608-105096 ( 46) AGATCATCGGTTCAAATCCGA 1 chrIX:325517-326071 ( 47) AGATCATCGGTTCAAATCCGA 1 chrX:542758-543258 ( 7) AGATCGGGCGTTCGACTCGCC 1 chrX:354159-354489 ( 29) AGATCGGGCGTTCGACTCGCC 1 chrVI:210325-210907 ( 62) AGATCGGGCGTTCGACTCGCC 1 chrVI:167238-167711 ( 72) AGATCGGGCGTTCGACTCGCC 1 chrXVI:622308-622843 ( 24) AGGTCCTGTGTTCGATCCACA 1 chrXVI:559986-560473 ( 28) AGGTCCTGTGTTCGATCCACA 1 chrIV:1094992-1095718 ( 74) AGGTCCTGTGTTCGATCCACA 1 chrII:36226-36769 ( 12) AGGTCCTGTGTTCGATCCACA 1 chrXIV:632493-632886 ( 4) AGATCGTGAGTTCAACCCTCA 1 chrXII:975801-976154 ( 65) AGATCGTGAGTTCAACCCTCA 1 chrXI:74414-74868 ( 77) AGATCGTGAGTTCAACCCTCA 1 chrVII:730956-731402 ( 52) AGATCGTGAGTTCAACCCTCA 1 chrVI:137139-137792 ( 80) AGATCGTGAGTTCAACCCTCA 1 chrXII:374190-374668 ( 19) AGATTCCAGGTTCAAGTCCTG 1 chrXI:490742-491227 ( 77) AGATTCCAGGTTCAAGTCCTG 1 chrIV:619747-620251 ( 29) AGATTCCAGGTTCAAGTCCTG 1 chrXIII:572608-573238 ( 19) AGGTCGAGAGTTCGAACCTCC 1 chrXVI:435669-436199 ( 18) TGGTCCTTAGTTCGATCCTGA 1 chrVII:706936-707272 ( 63) TGGTCCTTAGTTCGATCCTGA 1 chrXVI:744079-744628 ( 23) AGGTCGTTAGTTCAATTCTGA 1 chrVII:1004039-1004426 ( 76) AGGTCGTTAGTTCAATTCTGA 1 chrXII:167712-168268 ( 13) CCCGCGCAGGTTCGAGTCCTG 1 chrVIII:132796-133359 ( 8) CCCGCGCAGGTTCGAGTCCTG 1 chrIV:437536-438063 ( 75) CCCGCGCAGGTTCGAGTCCTG 1 chrII:226970-227344 ( 20) CCCGCGCAGGTTCGAGTCCTG 1 chrXI:312840-314001 ( 40) GAAACCCTGGTTCGATTCTAG 1 chrVIII:62533-63046 ( 58) GAAACCCTGGTTCGATTCTAG 1 chrIV:519654-519961 ( 40) TCCGCGCGAGTTCGAACCTCG 1 chrII:9453-9854 ( 34) TCCGCGCGAGTTCGAACCTCG 1 chrXVI:689345-689881 ( 54) CCCGCGCTGGTTCAAATCCTG 1 chrV:288178-288744 ( 41) CCCGCGCTGGTTCAAATCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGAYYCCSV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 38960 bayes= 9.76262 E= 2.6e-319 94 -61 33 -289 -108 -11 180 -489 11 -120 161 -1323 -72 -87 -120 102 -1323 197 -1323 -31 -14 126 26 -330 -489 101 80 -19 -208 61 153 -189 -57 -220 189 -289 -1323 -1323 239 -1323 -1323 -1323 -1323 169 -1323 -1323 -1323 169 -1323 239 -1323 -1323 -43 -1323 201 -1323 169 -1323 -1323 -1323 -143 26 13 54 -1323 126 -1323 81 -1323 239 -1323 -1323 -289 185 -220 -43 -389 153 80 -172 -31 85 109 -1323 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGAYYCCSV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 96 E= 2.6e-319 0.593750 0.125000 0.239583 0.041667 0.145833 0.177083 0.666667 0.010417 0.333333 0.083333 0.583333 0.000000 0.187500 0.104167 0.083333 0.625000 0.000000 0.750000 0.000000 0.250000 0.281250 0.458333 0.229167 0.031250 0.010417 0.385417 0.333333 0.270833 0.072917 0.291667 0.552083 0.083333 0.208333 0.041667 0.708333 0.041667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.229167 0.000000 0.770833 0.000000 1.000000 0.000000 0.000000 0.000000 0.114583 0.229167 0.208333 0.447917 0.000000 0.458333 0.000000 0.541667 0.000000 1.000000 0.000000 0.000000 0.041667 0.687500 0.041667 0.229167 0.020833 0.552083 0.333333 0.093750 0.250000 0.343750 0.406250 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGAYYCCSV MEME-1 regular expression -------------------------------------------------------------------------------- [AG]G[GA]T[CT][CAG][CGT][GC][GA]GTTC[GA]A[TCG][TC]C[CT][CG][GCA] -------------------------------------------------------------------------------- Time 223.10 secs. ******************************************************************************** ******************************************************************************** MOTIF GSYBNBDTRGYBYAGTGGKTA MEME-2 width = 21 sites = 108 llr = 1432 E-value = 1.0e-208 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSYBNBDTRGYBYAGTGGKTA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:1213:4:::1a3::::26 pos.-specific C :45333::::643::11:12: probability G 8423224:6a:32:7:6a4:1 matrix T 2133333a::434::92:563 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * * * Relative 1.4 * * ** * Entropy 1.2 * **** *** * (19.1 bits) 1.0 * **** ***** 0.7 ** **** ***** 0.5 *** ****** ****** * 0.2 **** **************** 0.0 --------------------- Multilevel GCCCCTGTGGCCTAGTGGTTA consensus GTTTCA A TGC A GAT sequence GAGT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYBNBDTRGYBYAGTGGKTA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXVI:689345-689881 + 2 3.52e-09 G GGCACTATGGCCGAGTGGTTA AGGCGACAGA chrIII:227743-228212 + 15 3.52e-09 AAATCGAAAT GGCACTATGGCCGAGTGGTTA AGGCGAGAGA chrXII:605165-605638 - 61 5.12e-09 TTTCGAAAAT GCTCGTGTAGCTCAGTGGTTA GAGCTTCGTG chrXV:274440-274985 + 11 6.13e-09 AAGTAATCGT GTCCCAGTGGCCGAGTGGTTA AGGCGATGCC chrIV:1150697-1151172 - 37 6.13e-09 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTTA AGGCGATGCC chrXIII:259007-259494 - 19 7.33e-09 AAGTTAGTAT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrXII:167712-168268 - 65 7.33e-09 ATAGTCATAT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrX:523769-524426 - 26 7.33e-09 AGAGATTAAA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrVIII:132796-133359 - 60 7.33e-09 TATAATAAGT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrIV:1305378-1305825 + 79 7.33e-09 TACAAATTAA GGCAACTTGGCCGAGTGGTTA A chrIV:437536-438063 + 23 7.33e-09 TCATTAGTAA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrXII:656830-657214 - 14 1.03e-08 CAAGAAAATT GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrVII:774143-774640 + 8 1.03e-08 ATTAATT GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXIII:808081-808524 - 45 1.44e-08 AGAAGAAAAA GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrXII:448507-448959 - 18 1.44e-08 AAGAAGTTCC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrIV:520734-521171 + 70 1.44e-08 TCCATTTTAG GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrIII:168079-168566 - 80 1.44e-08 . GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrXVI:880105-880562 - 66 1.70e-08 ACAATATAAT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXIV:602068-602573 + 42 1.70e-08 AGATAACAAT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXII:734578-735002 + 62 1.70e-08 AACAAAGTTT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrIX:183292-183725 - 35 1.70e-08 ACAAATTCCT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrII:197164-197856 + 34 1.70e-08 CAGTAATCAA GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXIII:195944-196309 - 74 2.32e-08 TCACAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXII:92411-92724 + 31 2.32e-08 AAGTTAATAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrVIII:388688-389226 - 68 2.32e-08 ACAGATACAT GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrI:138936-139367 + 51 2.32e-08 CAATTAGTAC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXV:594229-594638 - 22 3.13e-08 TGATTGAAAC GCGCAAGTGGTTCAGTGGTTA GAATTTATGC chrXV:110855-111204 - 34 3.63e-08 CAATTAACCC GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrXVI:775611-776063 - 29 5.56e-08 TAATTCAAAA GCTCGTATGGCGCAGTGGTAG CGCAGCAGAT chrXVI:435669-436199 - 60 5.56e-08 TACAACAAAA GCTCGTATGGCGCAGTGGTAG CGCAGCAGAT chrXV:353889-354320 - 39 5.56e-08 ACGGTTTACT GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrXIV:104608-105096 + 3 5.56e-08 GA GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrXIII:372190-372769 - 69 5.56e-08 AATAAAACCT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXI:379459-379925 + 38 5.56e-08 CAGATTAATA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXI:307945-308453 - 48 5.56e-08 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrX:378123-378597 + 50 5.56e-08 TAAATTAATA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrX:59007-59371 - 13 5.56e-08 TAAAATAGAA GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrVII:823348-823713 + 2 5.56e-08 T GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrV:438469-438925 + 53 5.56e-08 CAACAAATTA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrIX:325517-326071 + 4 5.56e-08 CGA GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrXVI:581849-582333 + 21 6.37e-08 CAACAAAAGA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrXIII:480410-481003 - 17 6.37e-08 ACAATAAGTA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrX:414744-415243 + 23 6.37e-08 CAACGAATTA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrVII:122043-122548 + 24 6.37e-08 CAACGAATTA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrV:130844-131371 - 76 6.37e-08 AAGA GGTTTTATAGTGTAGTGGTTA TCACTTTCGG chrIV:1201524-1202002 + 37 6.37e-08 CAAATAAATA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrIII:151041-151586 - 73 6.37e-08 TTAAAGA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrII:350600-351040 + 57 6.37e-08 TCAATAAAAG GGTTTTATAGTGTAGTGGTTA TCACTTTCGG chrXI:162430-162690 - 28 8.33e-08 ACAAATATTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrXVI:860136-860691 + 16 1.22e-07 TAAATAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXV:226455-226871 - 48 1.22e-07 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrX:396560-397054 - 19 1.22e-07 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrVII:1004039-1004426 + 34 1.22e-07 TCAAGGGTTT GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrVII:930843-931155 - 54 1.22e-07 TAATCAGTAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrVII:845361-846002 + 18 1.22e-07 TAAATAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrVII:661527-661977 + 47 1.22e-07 GTAAAAATTT GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrVI:162025-162402 + 65 1.22e-07 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXV:340140-340618 - 22 2.24e-07 TCAAGATCTG TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrXI:490742-491227 + 34 2.24e-07 ATAATTCTTG TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrX:538435-538761 + 7 2.24e-07 AAGTTG GTTCCGTTGGCGTAATGGTAA CGCGTCTCCC chrIV:619747-620251 - 72 2.24e-07 AAATCTTG TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrXIII:504646-505213 + 16 2.51e-07 ACAGATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrXII:962815-963289 - 33 2.51e-07 TATTATCGAC GGAGGGTTGGCCGAGTGGTCT AAGGCGGCAG chrXII:628179-628646 + 21 2.51e-07 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrXI:84012-84442 + 31 2.51e-07 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCT AAGGCGGCAG chrX:424276-424739 - 38 2.51e-07 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCT AAGGCGGCAG chrVII:422895-423350 + 20 2.51e-07 ACAGATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrVII:205174-205810 + 79 2.51e-07 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCT A chrXI:326421-327561 - 31 3.90e-07 CAAGAGAATG GCCGCTATGGACCAATGGTTA GAAATGGAAA chrII:326536-327202 - 26 5.35e-07 TCGAGTTCCG GGTCCAATGGTCCAGTGGTTC AAGACGTCGC chrVII:115258-115721 + 49 6.55e-07 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrXV:228079-228555 + 64 7.24e-07 TAAAATATTA GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrXI:74414-74868 + 33 7.24e-07 ATAGCAATTA GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrVII:730956-731402 + 8 7.24e-07 TCAAAAA GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrIII:127541-127905 + 43 7.24e-07 AAGATAAAAT GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrXIV:374707-375082 + 25 1.52e-06 AGAAAAATAA GCGGACTTAGCTCAGTTGGGA GAGCGCCAGA chrVIII:62533-63046 + 16 1.66e-06 AAAATCATAT GCCATCTTAGTATAGTGGTTA GTACACATCG chrXV:571693-572284 + 20 1.81e-06 ACAATTAAAA TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrXII:426893-427428 + 22 1.81e-06 GTGTTTCTTA TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrX:374190-374833 - 14 1.81e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrVII:544416-544878 - 31 1.81e-06 AGATATTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrVII:531389-531812 + 60 1.81e-06 TCGAGTTACT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrIX:324163-324587 - 29 1.81e-06 CATCTAATAT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrIV:568691-569229 + 54 1.81e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrII:405670-406200 + 75 1.81e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GAATG chrXIII:352098-352501 + 31 1.97e-06 ATGAATATAA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrVIII:237748-238087 - 52 1.97e-06 CAAATAGTAA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrVII:440544-441014 - 58 1.97e-06 TAAAATATAT GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrXIII:572608-573238 - 62 2.53e-06 ATAACAGACA GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrX:390924-391333 - 17 2.53e-06 AAGAAATAGT GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrV:305809-307415 - 71 2.53e-06 CCAAAAAAG GTTCCTGTAGCATAATGGTTA GCTAGATATC chrIV:1175588-1176071 + 50 2.53e-06 ACAAAACAAA GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrXVI:338710-339184 - 2 4.66e-06 ATGATTTAGC AGCGCCGTGGCGCAGTGGAAG C chrX:517675-518097 - 28 4.66e-06 ATAAAAGTTA AGCGCCGTGGCGCAGTGGAAG CGCGCAGGGC chrIX:197125-198061 + 49 4.66e-06 GCTAATCAAA TCCGATGTAGTGTAACGGCTA TCACATCACG chrIV:1075284-1075756 - 54 4.66e-06 CCGTAATATT GTTCCAATAGTGTAGCGGCTA TCACGTTGCC chrIV:1016953-1017510 - 77 4.66e-06 CAA TCCGATGTAGTGTAACGGCTA TCACATCACG chrIII:149718-150210 + 6 4.66e-06 TGTTG AGCGCCGTGGCGCAGTGGAAG CGCGCAGGGC chrXVI:210008-210574 - 2 7.08e-06 CCAATTATTG TCCGATATAGTGTAACGGCTA T chrX:415698-416293 - 71 7.08e-06 ACAAAAGTT GAAGCGGTGGCTCAATGGTAG AGCTTTCGAC chrX:115734-116231 - 58 7.08e-06 CCGTTTATAA TCCGATATAGTGTAACGGCTA TCACATCACG chrVII:287176-287685 - 55 7.08e-06 ATTTCAAGAT GAAGCGGTGGCTCAATGGTAG AGCTTTCGAC chrIX:370255-370607 + 36 7.08e-06 TAGATTATAA TCCGATATAGTGTAACGGCTA TCACATCACG chrIII:82454-82649 - 12 7.08e-06 TAATTTGTTA TCCGATATAGTGTAACGGCTA TCACATCACG chrII:644941-645409 + 42 7.08e-06 TAAGTTATTA TCCGATATAGTGTAACGGCTA TCACATCACG chrXIII:837714-838173 + 35 8.61e-06 AGTTAATTGA CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA chrX:542758-543258 - 66 8.61e-06 CAATTAAATA CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA chrVI:167238-167711 + 13 8.61e-06 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYBNBDTRGYBYAGTGGKTA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:689345-689881 3.5e-09 1_[+2]_78 chrIII:227743-228212 3.5e-09 14_[+2]_65 chrXII:605165-605638 5.1e-09 60_[-2]_19 chrXV:274440-274985 6.1e-09 10_[+2]_69 chrIV:1150697-1151172 6.1e-09 36_[-2]_43 chrXIII:259007-259494 7.3e-09 18_[-2]_61 chrXII:167712-168268 7.3e-09 64_[-2]_15 chrX:523769-524426 7.3e-09 25_[-2]_54 chrVIII:132796-133359 7.3e-09 59_[-2]_20 chrIV:1305378-1305825 7.3e-09 78_[+2]_1 chrIV:437536-438063 7.3e-09 22_[+2]_57 chrXII:656830-657214 1e-08 13_[-2]_66 chrVII:774143-774640 1e-08 7_[+2]_72 chrXIII:808081-808524 1.4e-08 44_[-2]_35 chrXII:448507-448959 1.4e-08 17_[-2]_62 chrIV:520734-521171 1.4e-08 69_[+2]_10 chrIII:168079-168566 1.4e-08 79_[-2] chrXVI:880105-880562 1.7e-08 65_[-2]_14 chrXIV:602068-602573 1.7e-08 41_[+2]_38 chrXII:734578-735002 1.7e-08 61_[+2]_18 chrIX:183292-183725 1.7e-08 34_[-2]_45 chrII:197164-197856 1.7e-08 33_[+2]_46 chrXIII:195944-196309 2.3e-08 73_[-2]_6 chrXII:92411-92724 2.3e-08 30_[+2]_49 chrVIII:388688-389226 2.3e-08 67_[-2]_12 chrI:138936-139367 2.3e-08 50_[+2]_29 chrXV:594229-594638 3.1e-08 21_[-2]_58 chrXV:110855-111204 3.6e-08 33_[-2]_46 chrXVI:775611-776063 5.6e-08 28_[-2]_51 chrXVI:435669-436199 5.6e-08 59_[-2]_20 chrXV:353889-354320 5.6e-08 38_[-2]_41 chrXIV:104608-105096 5.6e-08 2_[+2]_77 chrXIII:372190-372769 5.6e-08 68_[-2]_11 chrXI:379459-379925 5.6e-08 37_[+2]_42 chrXI:307945-308453 5.6e-08 47_[-2]_32 chrX:378123-378597 5.6e-08 49_[+2]_30 chrX:59007-59371 5.6e-08 12_[-2]_67 chrVII:823348-823713 5.6e-08 1_[+2]_78 chrV:438469-438925 5.6e-08 52_[+2]_27 chrIX:325517-326071 5.6e-08 3_[+2]_76 chrXVI:581849-582333 6.4e-08 20_[+2]_59 chrXIII:480410-481003 6.4e-08 16_[-2]_63 chrX:414744-415243 6.4e-08 22_[+2]_57 chrVII:122043-122548 6.4e-08 23_[+2]_56 chrV:130844-131371 6.4e-08 75_[-2]_4 chrIV:1201524-1202002 6.4e-08 36_[+2]_43 chrIII:151041-151586 6.4e-08 72_[-2]_7 chrII:350600-351040 6.4e-08 56_[+2]_23 chrXI:162430-162690 8.3e-08 27_[-2]_52 chrXVI:860136-860691 1.2e-07 15_[+2]_64 chrXV:226455-226871 1.2e-07 47_[-2]_32 chrX:396560-397054 1.2e-07 18_[-2]_61 chrVII:1004039-1004426 1.2e-07 33_[+2]_46 chrVII:930843-931155 1.2e-07 53_[-2]_26 chrVII:845361-846002 1.2e-07 17_[+2]_62 chrVII:661527-661977 1.2e-07 46_[+2]_33 chrVI:162025-162402 1.2e-07 64_[+2]_15 chrXV:340140-340618 2.2e-07 21_[-2]_58 chrXI:490742-491227 2.2e-07 33_[+2]_46 chrX:538435-538761 2.2e-07 6_[+2]_73 chrIV:619747-620251 2.2e-07 71_[-2]_8 chrXIII:504646-505213 2.5e-07 15_[+2]_64 chrXII:962815-963289 2.5e-07 32_[-2]_47 chrXII:628179-628646 2.5e-07 20_[+2]_59 chrXI:84012-84442 2.5e-07 30_[+2]_49 chrX:424276-424739 2.5e-07 37_[-2]_42 chrVII:422895-423350 2.5e-07 19_[+2]_60 chrVII:205174-205810 2.5e-07 78_[+2]_1 chrXI:326421-327561 3.9e-07 30_[-2]_49 chrII:326536-327202 5.4e-07 25_[-2]_54 chrVII:115258-115721 6.6e-07 48_[+2]_31 chrXV:228079-228555 7.2e-07 63_[+2]_16 chrXI:74414-74868 7.2e-07 32_[+2]_47 chrVII:730956-731402 7.2e-07 7_[+2]_72 chrIII:127541-127905 7.2e-07 42_[+2]_37 chrXIV:374707-375082 1.5e-06 24_[+2]_55 chrVIII:62533-63046 1.7e-06 15_[+2]_64 chrXV:571693-572284 1.8e-06 19_[+2]_60 chrXII:426893-427428 1.8e-06 21_[+2]_58 chrX:374190-374833 1.8e-06 13_[-2]_66 chrVII:544416-544878 1.8e-06 30_[-2]_49 chrVII:531389-531812 1.8e-06 59_[+2]_20 chrIX:324163-324587 1.8e-06 28_[-2]_51 chrIV:568691-569229 1.8e-06 53_[+2]_26 chrII:405670-406200 1.8e-06 74_[+2]_5 chrXIII:352098-352501 2e-06 30_[+2]_49 chrVIII:237748-238087 2e-06 51_[-2]_28 chrVII:440544-441014 2e-06 57_[-2]_22 chrXIII:572608-573238 2.5e-06 61_[-2]_18 chrX:390924-391333 2.5e-06 16_[-2]_63 chrV:305809-307415 2.5e-06 70_[-2]_9 chrIV:1175588-1176071 2.5e-06 49_[+2]_30 chrXVI:338710-339184 4.7e-06 1_[-2]_78 chrX:517675-518097 4.7e-06 27_[-2]_52 chrIX:197125-198061 4.7e-06 48_[+2]_31 chrIV:1075284-1075756 4.7e-06 53_[-2]_26 chrIV:1016953-1017510 4.7e-06 76_[-2]_3 chrIII:149718-150210 4.7e-06 5_[+2]_74 chrXVI:210008-210574 7.1e-06 1_[-2]_78 chrX:415698-416293 7.1e-06 70_[-2]_9 chrX:115734-116231 7.1e-06 57_[-2]_22 chrVII:287176-287685 7.1e-06 54_[-2]_25 chrIX:370255-370607 7.1e-06 35_[+2]_44 chrIII:82454-82649 7.1e-06 11_[-2]_68 chrII:644941-645409 7.1e-06 41_[+2]_38 chrXIII:837714-838173 8.6e-06 34_[+2]_45 chrX:542758-543258 8.6e-06 65_[-2]_14 chrVI:167238-167711 8.6e-06 12_[+2]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYBNBDTRGYBYAGTGGKTA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSYBNBDTRGYBYAGTGGKTA width=21 seqs=108 chrXVI:689345-689881 ( 2) GGCACTATGGCCGAGTGGTTA 1 chrIII:227743-228212 ( 15) GGCACTATGGCCGAGTGGTTA 1 chrXII:605165-605638 ( 61) GCTCGTGTAGCTCAGTGGTTA 1 chrXV:274440-274985 ( 11) GTCCCAGTGGCCGAGTGGTTA 1 chrIV:1150697-1151172 ( 37) GTCCCAGTGGCCGAGTGGTTA 1 chrXIII:259007-259494 ( 19) GGCAACTTGGCCGAGTGGTTA 1 chrXII:167712-168268 ( 65) GGCAACTTGGCCGAGTGGTTA 1 chrX:523769-524426 ( 26) GGCAACTTGGCCGAGTGGTTA 1 chrVIII:132796-133359 ( 60) GGCAACTTGGCCGAGTGGTTA 1 chrIV:1305378-1305825 ( 79) GGCAACTTGGCCGAGTGGTTA 1 chrIV:437536-438063 ( 23) GGCAACTTGGCCGAGTGGTTA 1 chrXII:656830-657214 ( 14) GGGCGTGTGGCGTAGTCGGTA 1 chrVII:774143-774640 ( 8) GGGCGTGTGGCGTAGTCGGTA 1 chrXIII:808081-808524 ( 45) GGTCCTATAGTGTAGTGGTTA 1 chrXII:448507-448959 ( 18) GGTCCTATAGTGTAGTGGTTA 1 chrIV:520734-521171 ( 70) GGTCCTATAGTGTAGTGGTTA 1 chrIII:168079-168566 ( 80) GGTCCTATAGTGTAGTGGTTA 1 chrXVI:880105-880562 ( 66) GGTCTCTTGGCCCAGTTGGTT 1 chrXIV:602068-602573 ( 42) GGTCTCTTGGCCCAGTTGGTT 1 chrXII:734578-735002 ( 62) GGTCTCTTGGCCCAGTTGGTT 1 chrIX:183292-183725 ( 35) GGTCTCTTGGCCCAGTTGGTT 1 chrII:197164-197856 ( 34) GGTCTCTTGGCCCAGTTGGTT 1 chrXIII:195944-196309 ( 74) GGGCGTGTGGTCTAGTGGTAT 1 chrXII:92411-92724 ( 31) GGGCGTGTGGTCTAGTGGTAT 1 chrVIII:388688-389226 ( 68) GGGCGTGTGGTCTAGTGGTAT 1 chrI:138936-139367 ( 51) GGGCGTGTGGTCTAGTGGTAT 1 chrXV:594229-594638 ( 22) GCGCAAGTGGTTCAGTGGTTA 1 chrXV:110855-111204 ( 34) GGGCGGTTAGTGTAGTGGTTA 1 chrXVI:775611-776063 ( 29) GCTCGTATGGCGCAGTGGTAG 1 chrXVI:435669-436199 ( 60) GCTCGTATGGCGCAGTGGTAG 1 chrXV:353889-354320 ( 39) GCTTCTATGGCCAAGTTGGTA 1 chrXIV:104608-105096 ( 3) GCTTCTATGGCCAAGTTGGTA 1 chrXIII:372190-372769 ( 69) GGTTTCGTGGTCTAGTCGGTT 1 chrXI:379459-379925 ( 38) GGTTTCGTGGTCTAGTCGGTT 1 chrXI:307945-308453 ( 48) GGTTTCGTGGTCTAGTCGGTT 1 chrX:378123-378597 ( 50) GGTTTCGTGGTCTAGTCGGTT 1 chrX:59007-59371 ( 13) GCTTCTATGGCCAAGTTGGTA 1 chrVII:823348-823713 ( 2) GGTTTCGTGGTCTAGTCGGTT 1 chrV:438469-438925 ( 53) GGTTTCGTGGTCTAGTCGGTT 1 chrIX:325517-326071 ( 4) GCTTCTATGGCCAAGTTGGTA 1 chrXVI:581849-582333 ( 21) GCCTTGTTGGCGCAATCGGTA 1 chrXIII:480410-481003 ( 17) GCCTTGTTGGCGCAATCGGTA 1 chrX:414744-415243 ( 23) GCCTTGTTGGCGCAATCGGTA 1 chrVII:122043-122548 ( 24) GCCTTGTTGGCGCAATCGGTA 1 chrV:130844-131371 ( 76) GGTTTTATAGTGTAGTGGTTA 1 chrIV:1201524-1202002 ( 37) GCCTTGTTGGCGCAATCGGTA 1 chrIII:151041-151586 ( 73) GCCTTGTTGGCGCAATCGGTA 1 chrII:350600-351040 ( 57) GGTTTTATAGTGTAGTGGTTA 1 chrXI:162430-162690 ( 28) GCTCGCGTGGCGTAATGGCAA 1 chrXVI:860136-860691 ( 16) GCGCAAGTGGTTTAGTGGTAA 1 chrXV:226455-226871 ( 48) GCGCAAGTGGTTTAGTGGTAA 1 chrX:396560-397054 ( 19) GCGCAAGTGGTTTAGTGGTAA 1 chrVII:1004039-1004426 ( 34) GCCTCCTTAGCTTAGTGGTAG 1 chrVII:930843-931155 ( 54) GCGCAAGTGGTTTAGTGGTAA 1 chrVII:845361-846002 ( 18) GCGCAAGTGGTTTAGTGGTAA 1 chrVII:661527-661977 ( 47) GCCTCCTTAGCTTAGTGGTAG 1 chrVI:162025-162402 ( 65) GCGCAAGTGGTTTAGTGGTAA 1 chrXV:340140-340618 ( 22) TTCCTCGTGGCCCAATGGTCA 1 chrXI:490742-491227 ( 34) TTCCTCGTGGCCCAATGGTCA 1 chrX:538435-538761 ( 7) GTTCCGTTGGCGTAATGGTAA 1 chrIV:619747-620251 ( 72) TTCCTCGTGGCCCAATGGTCA 1 chrXIII:504646-505213 ( 16) GGTTGTTTGGCCGAGCGGTCT 1 chrXII:962815-963289 ( 33) GGAGGGTTGGCCGAGTGGTCT 1 chrXII:628179-628646 ( 21) GGTTGTTTGGCCGAGCGGTCT 1 chrXI:84012-84442 ( 31) GGAGGGTTGGCCGAGTGGTCT 1 chrX:424276-424739 ( 38) GGAGGGTTGGCCGAGTGGTCT 1 chrVII:422895-423350 ( 20) GGTTGTTTGGCCGAGCGGTCT 1 chrVII:205174-205810 ( 79) GGTTGTTTGGCCGAGCGGTCT 1 chrXI:326421-327561 ( 31) GCCGCTATGGACCAATGGTTA 1 chrII:326536-327202 ( 26) GGTCCAATGGTCCAGTGGTTC 1 chrVII:115258-115721 ( 49) TCCTTGTTAGCTCAGTTGGTA 1 chrXV:228079-228555 ( 64) GACTCCATGGCCAAGTTGGTT 1 chrXI:74414-74868 ( 33) GACTCCATGGCCAAGTTGGTT 1 chrVII:730956-731402 ( 8) GACTCCATGGCCAAGTTGGTT 1 chrIII:127541-127905 ( 43) GACTCCATGGCCAAGTTGGTT 1 chrXIV:374707-375082 ( 25) GCGGACTTAGCTCAGTTGGGA 1 chrVIII:62533-63046 ( 16) GCCATCTTAGTATAGTGGTTA 1 chrXV:571693-572284 ( 20) TCCGTGATAGTTTAATGGTCA 1 chrXII:426893-427428 ( 22) TCCGTGATAGTTTAATGGTCA 1 chrX:374190-374833 ( 14) TCCGTGATAGTTTAATGGTCA 1 chrVII:544416-544878 ( 31) TCCGTGATAGTTTAATGGTCA 1 chrVII:531389-531812 ( 60) TCCGTGATAGTTTAATGGTCA 1 chrIX:324163-324587 ( 29) TCCGTGATAGTTTAATGGTCA 1 chrIV:568691-569229 ( 54) TCCGTGATAGTTTAATGGTCA 1 chrII:405670-406200 ( 75) TCCGTGATAGTTTAATGGTCA 1 chrXIII:352098-352501 ( 31) GCGGATTTAGCTCAGTTGGGA 1 chrVIII:237748-238087 ( 52) GCGGATTTAGCTCAGTTGGGA 1 chrVII:440544-441014 ( 58) GCGGATTTAGCTCAGTTGGGA 1 chrXIII:572608-573238 ( 62) GCTTCAGTAGCTCAGTAGGAA 1 chrX:390924-391333 ( 17) GCTTCAGTAGCTCAGTAGGAA 1 chrV:305809-307415 ( 71) GTTCCTGTAGCATAATGGTTA 1 chrIV:1175588-1176071 ( 50) GCTTCAGTAGCTCAGTAGGAA 1 chrXVI:338710-339184 ( 2) AGCGCCGTGGCGCAGTGGAAG 1 chrX:517675-518097 ( 28) AGCGCCGTGGCGCAGTGGAAG 1 chrIX:197125-198061 ( 49) TCCGATGTAGTGTAACGGCTA 1 chrIV:1075284-1075756 ( 54) GTTCCAATAGTGTAGCGGCTA 1 chrIV:1016953-1017510 ( 77) TCCGATGTAGTGTAACGGCTA 1 chrIII:149718-150210 ( 6) AGCGCCGTGGCGCAGTGGAAG 1 chrXVI:210008-210574 ( 2) TCCGATATAGTGTAACGGCTA 1 chrX:415698-416293 ( 71) GAAGCGGTGGCTCAATGGTAG 1 chrX:115734-116231 ( 58) TCCGATATAGTGTAACGGCTA 1 chrVII:287176-287685 ( 55) GAAGCGGTGGCTCAATGGTAG 1 chrIX:370255-370607 ( 36) TCCGATATAGTGTAACGGCTA 1 chrIII:82454-82649 ( 12) TCCGATATAGTGTAACGGCTA 1 chrII:644941-645409 ( 42) TCCGATATAGTGTAACGGCTA 1 chrXIII:837714-838173 ( 35) CTCTCGGTAGCCAAGTTGGTT 1 chrX:542758-543258 ( 66) CTCTCGGTAGCCAAGTTGGTT 1 chrVI:167238-167711 ( 13) CTCTCGGTAGCCAAGTTGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYBNBDTRGYBYAGTGGKTA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 38960 bayes= 9.06114 E= 1.0e-208 -347 -278 201 -81 -247 122 106 -160 -274 125 -20 11 -189 80 44 7 -48 72 -20 -6 -125 63 28 15 3 -1340 96 3 -1340 -1340 -1340 169 22 -1340 174 -1340 -1340 -1340 239 -1340 -506 166 -1340 33 -406 122 54 -25 -160 68 -28 49 169 -1340 -1340 -1340 -15 -1340 192 -1340 -1340 -78 -1340 152 -347 -56 176 -67 -1340 -1340 239 -1340 -347 -120 88 80 -48 -20 -237 89 105 -436 -120 -20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYBNBDTRGYBYAGTGGKTA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 108 E= 1.0e-208 0.027778 0.027778 0.768519 0.175926 0.055556 0.444444 0.398148 0.101852 0.046296 0.453704 0.166667 0.333333 0.083333 0.333333 0.259259 0.324074 0.222222 0.314815 0.166667 0.296296 0.129630 0.296296 0.231481 0.342593 0.314815 0.000000 0.370370 0.314815 0.000000 0.000000 0.000000 1.000000 0.361111 0.000000 0.638889 0.000000 0.000000 0.000000 1.000000 0.000000 0.009259 0.601852 0.000000 0.388889 0.018519 0.444444 0.277778 0.259259 0.101852 0.305556 0.157407 0.435185 1.000000 0.000000 0.000000 0.000000 0.277778 0.000000 0.722222 0.000000 0.000000 0.111111 0.000000 0.888889 0.027778 0.129630 0.648148 0.194444 0.000000 0.000000 1.000000 0.000000 0.027778 0.083333 0.351852 0.537037 0.222222 0.166667 0.037037 0.574074 0.638889 0.009259 0.083333 0.268519 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYBNBDTRGYBYAGTGGKTA MEME-2 regular expression -------------------------------------------------------------------------------- G[CG][CT][CTG][CTA][TCG][GAT]T[GA]G[CT][CGT][TC]A[GA]TGG[TG][TA][AT] -------------------------------------------------------------------------------- Time 428.67 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGMKTRDKARKCAKAYGCS MEME-3 width = 21 sites = 25 llr = 464 E-value = 4.9e-060 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGMKTRDKARKCAKAYGCS MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3::4::532a4::9:a:::: pos.-specific C :7:14::1::::191::6:95 probability G :::914:424:641:6::a:5 matrix T a:9::6a:44::5::4:4::: bits 2.4 * 2.1 * 1.9 * * ** 1.7 * * * ** Relative 1.4 * * * * * * *** Entropy 1.2 **** * ** ******** (26.8 bits) 1.0 **** ** ** ******** 0.7 ******** *********** 0.5 ******** ************ 0.2 ********************* 0.0 --------------------- Multilevel TCTGATTATGAGTCAGACGCG consensus A CG GAT AG T T C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGMKTRDKARKCAKAYGCS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIII:586405-586900 + 64 1.11e-10 CTGGGGACGT TCTGCGTGTTAAGCAGATGCC ATAACCGACT chrXIII:420342-420860 + 67 1.11e-10 CTGGGGACGT TCTGCGTGTTAAGCAGATGCC ATAACCGACT chrXIII:372190-372769 + 46 1.11e-10 CTGGGGACGT TCTGCGTGTTAAGCAGATGCC ATAACCGACT chrXI:379459-379925 - 61 1.11e-10 CTGGGGACGT TCTGCGTGTTAAGCAGATGCC ATAACCGACT chrXI:307945-308453 + 25 1.11e-10 CTGGGGACGT TCTGCGTGTTAAGCAGATGCC ATAACCGACT chrX:378123-378597 - 73 1.11e-10 GGGACGT TCTGCGTGTTAAGCAGATGCC ATAACCGACT chrVII:823348-823713 - 25 1.11e-10 CTGGGGACGT TCTGCGTGTTAAGCAGATGCC ATAACCGACT chrV:438469-438925 - 76 1.11e-10 ACGT TCTGCGTGTTAAGCAGATGCC ATAACCGACT chrXI:162430-162690 + 7 1.70e-10 TAATCT TCTGATTAGAAGTCAGACGCG TTGCCATTAC chrX:374190-374833 + 75 1.70e-10 CCCATAATCT TCTGATTAGAAGTCAGACGCG TTGCC chrII:405670-406200 - 14 1.70e-10 CCCATAATCT TCTGATTAGAAGTCAGACGCG TTGCCATTAC chrXVI:581849-582333 - 43 6.39e-10 CCCCTAACCT TATGATTAAGAGTCATACGCG CTACCGATTG chrX:414744-415243 - 45 6.39e-10 CCCCTAACCT TATGATTAAGAGTCATACGCG CTACCGATTG chrVII:122043-122548 - 46 6.39e-10 CCCCTAACCT TATGATTAAGAGTCATACGCG CTACCGATTG chrVI:226406-226982 + 74 6.39e-10 CCCCTAACCT TATGATTAAGAGTCATACGCG CTACCG chrV:435582-435944 + 69 6.39e-10 CCCCTAACCT TATGATTAAGAGTCATACGCG CTACCGATTG chrIX:299962-300517 + 69 6.39e-10 CCCCTAACCT TATGATTAAGAGTCATACGCG CTACCGATTG chrIV:1201524-1202002 - 59 6.39e-10 CCCCTAACCT TATGATTAAGAGTCATACGCG CTACCGATTG chrIII:151041-151586 + 51 6.39e-10 CCCCTAACCT TATGATTAAGAGTCATACGCG CTACCGATTG chrXI:490742-491227 - 56 2.02e-09 CCTGGAATCT TCTGGTTCGTAGCCAGACGCC GTGACCATTG chrIV:619747-620251 + 50 2.02e-09 CCTGGAATCT TCTGGTTCGTAGCCAGACGCC GTGACCATTG chrX:538435-538761 - 28 3.10e-09 CCCGCAGTCT TCTCCTTAGGAGGGAGACGCG TTACCATTAC chrX:391802-392112 - 75 1.21e-07 GGAGG TCTGGGTGTGGGGCGTGTGCG ACCTCGTTGC chrXIV:241378-242161 - 71 4.38e-07 GCTTTTACC TCAGCGGCTGAATCCGATGGC GCTGTGACTG chrII:326536-327202 + 3 6.87e-07 CT TCGCCGTGTAAAGGCGACGTC TTGAACCACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGMKTRDKARKCAKAYGCS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:586405-586900 1.1e-10 63_[+3]_16 chrXIII:420342-420860 1.1e-10 66_[+3]_13 chrXIII:372190-372769 1.1e-10 45_[+3]_34 chrXI:379459-379925 1.1e-10 60_[-3]_19 chrXI:307945-308453 1.1e-10 24_[+3]_55 chrX:378123-378597 1.1e-10 72_[-3]_7 chrVII:823348-823713 1.1e-10 24_[-3]_55 chrV:438469-438925 1.1e-10 75_[-3]_4 chrXI:162430-162690 1.7e-10 6_[+3]_73 chrX:374190-374833 1.7e-10 74_[+3]_5 chrII:405670-406200 1.7e-10 13_[-3]_66 chrXVI:581849-582333 6.4e-10 42_[-3]_37 chrX:414744-415243 6.4e-10 44_[-3]_35 chrVII:122043-122548 6.4e-10 45_[-3]_34 chrVI:226406-226982 6.4e-10 73_[+3]_6 chrV:435582-435944 6.4e-10 68_[+3]_11 chrIX:299962-300517 6.4e-10 68_[+3]_11 chrIV:1201524-1202002 6.4e-10 58_[-3]_21 chrIII:151041-151586 6.4e-10 50_[+3]_29 chrXI:490742-491227 2e-09 55_[-3]_24 chrIV:619747-620251 2e-09 49_[+3]_30 chrX:538435-538761 3.1e-09 27_[-3]_52 chrX:391802-392112 1.2e-07 74_[-3]_5 chrXIV:241378-242161 4.4e-07 70_[-3]_9 chrII:326536-327202 6.9e-07 2_[+3]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGMKTRDKARKCAKAYGCS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGMKTRDKARKCAKAYGCS width=21 seqs=25 chrXIII:586405-586900 ( 64) TCTGCGTGTTAAGCAGATGCC 1 chrXIII:420342-420860 ( 67) TCTGCGTGTTAAGCAGATGCC 1 chrXIII:372190-372769 ( 46) TCTGCGTGTTAAGCAGATGCC 1 chrXI:379459-379925 ( 61) TCTGCGTGTTAAGCAGATGCC 1 chrXI:307945-308453 ( 25) TCTGCGTGTTAAGCAGATGCC 1 chrX:378123-378597 ( 73) TCTGCGTGTTAAGCAGATGCC 1 chrVII:823348-823713 ( 25) TCTGCGTGTTAAGCAGATGCC 1 chrV:438469-438925 ( 76) TCTGCGTGTTAAGCAGATGCC 1 chrXI:162430-162690 ( 7) TCTGATTAGAAGTCAGACGCG 1 chrX:374190-374833 ( 75) TCTGATTAGAAGTCAGACGCG 1 chrII:405670-406200 ( 14) TCTGATTAGAAGTCAGACGCG 1 chrXVI:581849-582333 ( 43) TATGATTAAGAGTCATACGCG 1 chrX:414744-415243 ( 45) TATGATTAAGAGTCATACGCG 1 chrVII:122043-122548 ( 46) TATGATTAAGAGTCATACGCG 1 chrVI:226406-226982 ( 74) TATGATTAAGAGTCATACGCG 1 chrV:435582-435944 ( 69) TATGATTAAGAGTCATACGCG 1 chrIX:299962-300517 ( 69) TATGATTAAGAGTCATACGCG 1 chrIV:1201524-1202002 ( 59) TATGATTAAGAGTCATACGCG 1 chrIII:151041-151586 ( 51) TATGATTAAGAGTCATACGCG 1 chrXI:490742-491227 ( 56) TCTGGTTCGTAGCCAGACGCC 1 chrIV:619747-620251 ( 50) TCTGGTTCGTAGCCAGACGCC 1 chrX:538435-538761 ( 28) TCTCCTTAGGAGGGAGACGCG 1 chrX:391802-392112 ( 75) TCTGGGTGTGGGGCGTGTGCG 1 chrXIV:241378-242161 ( 71) TCAGCGGCTGAATCCGATGGC 1 chrII:326536-327202 ( 3) TCGCCGTGTAAAGGCGACGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGMKTRDKARKCAKAYGCS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 38960 bayes= 11.7383 E= 4.9e-060 -1129 -1129 -1129 169 5 183 -1129 -1129 -295 -1129 -225 157 -1129 -125 227 -1129 51 120 -67 -1129 -1129 -1129 120 86 -1129 -1129 -225 164 64 -67 107 -1129 5 -1129 33 51 -95 -1129 120 37 164 -1129 -225 -1129 37 -1129 165 -1129 -1129 -125 120 64 -1129 227 -125 -1129 151 -125 -225 -1129 -1129 -1129 174 22 164 -1129 -225 -1129 -1129 165 -1129 37 -1129 -1129 239 -1129 -1129 227 -225 -295 -1129 133 144 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGMKTRDKARKCAKAYGCS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 25 E= 4.9e-060 0.000000 0.000000 0.000000 1.000000 0.320000 0.680000 0.000000 0.000000 0.040000 0.000000 0.040000 0.920000 0.000000 0.080000 0.920000 0.000000 0.440000 0.440000 0.120000 0.000000 0.000000 0.000000 0.440000 0.560000 0.000000 0.000000 0.040000 0.960000 0.480000 0.120000 0.400000 0.000000 0.320000 0.000000 0.240000 0.440000 0.160000 0.000000 0.440000 0.400000 0.960000 0.000000 0.040000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.080000 0.440000 0.480000 0.000000 0.920000 0.080000 0.000000 0.880000 0.080000 0.040000 0.000000 0.000000 0.000000 0.640000 0.360000 0.960000 0.000000 0.040000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 0.920000 0.040000 0.040000 0.000000 0.480000 0.520000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGMKTRDKARKCAKAYGCS MEME-3 regular expression -------------------------------------------------------------------------------- T[CA]TG[AC][TG]T[AG][TAG][GT]A[GA][TG]CA[GT]A[CT]GC[GC] -------------------------------------------------------------------------------- Time 621.47 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71791-73273 9.43e-01 100 chrI:81841-82309 1.31e-01 100 chrI:138936-139367 7.98e-05 50_[+2(2.32e-08)]_29 chrI:166169-166604 9.79e-01 100 chrII:6842-7087 8.25e-01 100 chrII:9453-9854 2.45e-03 33_[+1(8.33e-07)]_46 chrII:36226-36769 3.42e-04 11_[+1(5.25e-08)]_68 chrII:44938-45399 7.97e-01 100 chrII:45555-46886 5.88e-01 100 chrII:59824-61494 2.71e-01 100 chrII:88961-90216 1.65e-01 100 chrII:165107-165398 5.48e-02 100 chrII:167896-168213 7.91e-01 100 chrII:181017-181680 3.36e-01 100 chrII:197164-197856 1.86e-12 33_[+2(1.70e-08)]_23_[+1(2.76e-10)]_\ 2 chrII:226970-227344 1.65e-03 19_[+1(4.74e-07)]_60 chrII:266202-266906 1.00e+00 100 chrII:326536-327202 1.24e-07 2_[+3(6.87e-07)]_2_[-2(5.35e-07)]_\ 54 chrII:332115-332935 5.32e-01 100 chrII:333297-334079 4.81e-02 100 chrII:347408-348060 7.80e-01 100 chrII:350600-351040 6.18e-05 56_[+2(6.37e-08)]_23 chrII:405670-406200 3.28e-15 13_[-3(1.70e-10)]_[+1(3.07e-09)]_19_\ [+2(1.81e-06)]_5 chrII:415485-416137 9.81e-01 100 chrII:476887-477770 9.54e-01 100 chrII:592860-593288 4.73e-01 100 chrII:604080-607129 2.93e-01 100 chrII:644941-645409 1.80e-03 41_[+2(7.08e-06)]_38 chrIII:69-1583 3.43e-02 100 chrIII:14456-15668 9.69e-01 100 chrIII:57381-59514 1.82e-01 100 chrIII:82454-82649 1.30e-02 11_[-2(7.08e-06)]_68 chrIII:90780-91089 4.02e-01 100 chrIII:123381-123804 3.02e-09 43_[-1(2.86e-13)]_36 chrIII:127541-127905 9.38e-04 42_[+2(7.24e-07)]_37 chrIII:142435-143003 4.21e-07 40_[-1(8.32e-11)]_39 chrIII:149718-150210 1.64e-06 5_[+2(4.66e-06)]_[-3(7.17e-06)]_5_\ [-1(6.25e-05)]_27 chrIII:151041-151586 1.52e-17 29_[-1(8.32e-11)]_[+3(6.39e-10)]_1_\ [-2(6.37e-08)]_7 chrIII:163438-163899 5.01e-02 100 chrIII:168079-168566 4.09e-10 37_[-1(5.61e-09)]_21_[-2(1.44e-08)] chrIII:178273-178783 9.98e-01 100 chrIII:227743-228212 1.67e-05 14_[+2(3.52e-09)]_65 chrIII:295330-295986 6.82e-01 100 chrIII:308600-308981 2.09e-02 70_[-1(8.52e-05)]_9 chrIII:316236-316596 1.78e-02 47_[+2(5.22e-05)]_32 chrIV:83320-84051 9.41e-01 100 chrIV:117142-118187 5.86e-01 100 chrIV:129277-131013 9.22e-01 100 chrIV:206521-210565 1.40e-01 100 chrIV:216592-218043 7.05e-02 100 chrIV:221096-221294 8.40e-01 100 chrIV:221603-222353 7.62e-01 100 chrIV:229305-230509 8.34e-01 100 chrIV:306215-309378 8.45e-01 100 chrIV:321644-321980 9.31e-01 100 chrIV:340956-342243 5.74e-01 100 chrIV:358026-358460 8.24e-01 100 chrIV:359090-359905 2.51e-01 100 chrIV:410192-410812 5.69e-01 100 chrIV:411238-411671 4.76e-02 100 chrIV:434004-435035 8.36e-01 100 chrIV:437536-438063 3.76e-09 22_[+2(7.33e-09)]_31_[+1(4.74e-07)]_\ 5 chrIV:488456-488997 2.78e-01 100 chrIV:490247-492551 8.86e-01 100 chrIV:519654-519961 2.55e-03 39_[+1(8.33e-07)]_40 chrIV:520734-521171 1.83e-05 69_[+2(1.44e-08)]_10 chrIV:538870-539292 1.21e-02 79_[+1(5.67e-05)] chrIV:568691-569229 4.12e-09 13_[+1(3.07e-09)]_19_[+2(1.81e-06)]_\ 26 chrIV:579003-580678 2.68e-01 100 chrIV:619747-620251 1.42e-13 28_[-1(1.11e-07)]_[+3(2.02e-09)]_1_\ [-2(2.24e-07)]_8 chrIV:667643-668579 7.73e-01 100 chrIV:802572-802843 1.11e-01 100 chrIV:835847-837968 1.77e-01 100 chrIV:884250-884655 9.60e-05 61_[+1(3.33e-08)]_18 chrIV:945778-946692 8.94e-01 100 chrIV:992674-993219 6.12e-01 100 chrIV:1013511-1013998 1.00e+00 100 chrIV:1016953-1017510 1.15e-09 34_[-1(6.94e-10)]_21_[-2(4.66e-06)]_\ 3 chrIV:1075284-1075756 1.53e-10 10_[-1(1.42e-10)]_22_[-2(4.66e-06)]_\ 26 chrIV:1094992-1095718 3.48e-04 73_[-1(5.25e-08)]_6 chrIV:1150697-1151172 2.43e-06 11_[+3(9.70e-05)]_4_[-2(6.13e-09)]_\ 43 chrIV:1175588-1176071 2.42e-04 49_[+2(2.53e-06)]_1_[-3(8.17e-05)]_\ 8 chrIV:1201524-1202002 1.52e-17 36_[+2(6.37e-08)]_1_[-3(6.39e-10)]_\ [+1(8.32e-11)] chrIV:1300829-1301403 6.37e-01 100 chrIV:1305378-1305825 5.26e-05 78_[+2(7.33e-09)]_1 chrIV:1351997-1353314 9.15e-01 100 chrIV:1354301-1356038 9.12e-02 100 chrIV:1359420-1360041 7.00e-02 100 chrIV:1401186-1401958 7.20e-01 100 chrIV:1450770-1451997 9.41e-01 100 chrIV:1461180-1461850 6.26e-01 100 chrIV:1489246-1489924 8.56e-01 100 chrIX:67782-69550 3.10e-01 100 chrIX:99359-100131 6.70e-01 100 chrIX:174845-175597 1.00e+00 100 chrIX:183292-183725 7.59e-06 34_[-2(1.70e-08)]_45 chrIX:197125-198061 8.97e-04 48_[+2(4.66e-06)]_31 chrIX:210660-210955 3.64e-01 100 chrIX:248535-249015 8.32e-01 100 chrIX:254185-254580 4.66e-01 100 chrIX:257353-257758 9.73e-01 100 chrIX:299962-300517 4.34e-13 47_[-1(8.32e-11)]_[+3(6.39e-10)]_11 chrIX:315989-317637 6.31e-01 100 chrIX:324163-324587 2.69e-03 28_[-2(1.81e-06)]_51 chrIX:325517-326071 1.94e-09 3_[+2(5.56e-08)]_22_[+1(4.01e-08)]_\ 33 chrIX:336042-336636 5.47e-06 68_[-1(3.66e-08)]_11 chrIX:370255-370607 1.87e-09 35_[+2(7.08e-06)]_21_[+1(6.94e-10)]_\ 2 chrIX:390053-390879 3.20e-01 100 chrV:6186-6564 8.45e-01 100 chrV:52491-53290 8.53e-01 100 chrV:53453-54311 7.72e-01 100 chrV:61174-62128 6.10e-01 100 chrV:67163-68790 1.75e-01 100 chrV:69110-69311 9.86e-02 100 chrV:85109-86258 3.92e-01 100 chrV:86420-87088 8.21e-01 100 chrV:99837-100284 6.50e-01 100 chrV:117602-118302 2.51e-01 100 chrV:130844-131371 1.23e-09 33_[-1(5.61e-09)]_21_[-2(6.37e-08)]_\ 4 chrV:135165-136053 3.88e-01 100 chrV:138475-140925 8.33e-01 100 chrV:176883-177446 5.17e-07 26_[+1(6.94e-10)]_53 chrV:207355-207547 5.67e-01 100 chrV:249762-250539 8.60e-02 100 chrV:270327-270675 9.97e-01 100 chrV:288178-288744 1.16e-03 40_[-1(1.63e-06)]_39 chrV:305809-307415 2.53e-03 70_[-2(2.53e-06)]_9 chrV:311736-312303 1.37e-06 62_[-1(1.00e-10)]_17 chrV:354790-355299 1.07e-01 100 chrV:362022-363259 6.00e-01 100 chrV:396038-397971 3.74e-01 100 chrV:423074-424366 9.74e-01 100 chrV:431039-431928 9.12e-01 100 chrV:434389-435155 4.99e-01 100 chrV:435582-435944 7.74e-13 47_[-1(8.32e-11)]_[+3(6.39e-10)]_11 chrV:438469-438925 1.89e-11 52_[+2(5.56e-08)]_2_[-3(1.11e-10)]_\ 4 chrV:441783-442657 4.39e-01 100 chrV:443062-443340 1.50e-06 59_[-1(2.76e-10)]_20 chrV:469259-469850 7.09e-01 100 chrV:486993-487640 3.91e-06 73_[-1(6.94e-10)]_6 chrV:492229-492429 6.81e-01 100 chrV:551007-551592 1.03e-07 44_[-1(2.76e-10)]_35 chrVI:4520-4770 7.37e-01 100 chrVI:64225-65379 2.90e-01 100 chrVI:95414-95911 1.54e-01 100 chrVI:101366-101714 4.62e-01 100 chrVI:137139-137792 5.54e-04 79_[-1(7.40e-08)] chrVI:157897-158235 5.40e-01 100 chrVI:162025-162402 4.54e-04 64_[+2(1.22e-07)]_15 chrVI:167238-167711 3.86e-07 12_[+2(8.61e-06)]_38_[+1(4.39e-08)]_\ 8 chrVI:180694-181266 1.14e-07 52_[-1(8.32e-11)]_27 chrVI:191212-191759 6.21e-01 100 chrVI:210325-210907 8.93e-05 61_[-1(4.39e-08)]_18 chrVI:220305-222253 9.19e-01 100 chrVI:222720-224708 1.72e-01 100 chrVI:226406-226982 8.34e-13 52_[-1(8.32e-11)]_[+3(6.39e-10)]_6 chrVII:110273-110787 9.26e-01 100 chrVII:115258-115721 2.42e-04 48_[+2(6.55e-07)]_31 chrVII:122043-122548 1.52e-17 23_[+2(6.37e-08)]_1_[-3(6.39e-10)]_\ [+1(8.32e-11)]_13 chrVII:148200-149584 9.82e-01 100 chrVII:185489-185934 7.41e-08 61_[-1(8.32e-11)]_18 chrVII:205174-205810 1.43e-04 78_[+2(2.51e-07)]_1 chrVII:254142-254722 3.66e-01 100 chrVII:277012-278686 6.70e-01 100 chrVII:287176-287685 6.54e-03 54_[-2(7.08e-06)]_25 chrVII:310450-312176 9.30e-01 100 chrVII:319242-320199 8.83e-01 100 chrVII:328387-328995 6.28e-01 100 chrVII:345909-346591 3.03e-01 100 chrVII:364892-366640 9.82e-01 100 chrVII:370741-370977 7.69e-02 100 chrVII:371169-371491 7.29e-01 100 chrVII:401163-401619 4.81e-01 100 chrVII:405463-405857 9.26e-01 100 chrVII:411723-412579 7.46e-01 100 chrVII:422895-423350 1.24e-03 19_[+2(2.51e-07)]_60 chrVII:438503-439837 3.56e-01 100 chrVII:440544-441014 5.04e-03 57_[-2(1.97e-06)]_22 chrVII:479243-482687 2.85e-01 100 chrVII:519401-520580 2.62e-02 77_[+1(2.79e-05)]_2 chrVII:531389-531812 1.85e-04 35_[-1(6.67e-05)]_3_[+2(1.81e-06)]_\ 20 chrVII:533841-535204 9.47e-01 100 chrVII:541710-542157 1.20e-06 8_[+1(6.94e-10)]_71 chrVII:544416-544878 7.83e-03 30_[-2(1.81e-06)]_49 chrVII:555137-556682 9.43e-01 100 chrVII:561468-561725 2.64e-01 100 chrVII:648787-649343 2.79e-01 100 chrVII:661527-661977 2.58e-04 46_[+2(1.22e-07)]_33 chrVII:700412-701164 5.66e-01 100 chrVII:706936-707272 1.43e-03 62_[-1(2.33e-07)]_17 chrVII:726391-728377 4.01e-02 100 chrVII:730956-731402 4.50e-08 7_[+2(7.24e-07)]_23_[+1(7.40e-08)]_\ 28 chrVII:736170-736687 5.74e-06 3_[+1(3.07e-09)]_76 chrVII:738918-739504 2.00e-06 4_[+1(2.76e-10)]_75 chrVII:774143-774640 2.57e-11 7_[+2(1.03e-08)]_22_[+1(6.94e-10)]_\ 29 chrVII:779368-779761 8.11e-01 100 chrVII:788147-788754 6.67e-01 100 chrVII:794083-794574 9.99e-01 100 chrVII:823348-823713 7.86e-17 1_[+2(5.56e-08)]_2_[-3(1.11e-10)]_\ [+1(3.07e-09)]_34 chrVII:828419-828988 7.30e-06 78_[-1(3.07e-09)]_1 chrVII:845361-846002 6.19e-11 17_[+2(1.22e-07)]_20_[+1(8.32e-11)]_\ 21 chrVII:856730-857683 1.71e-01 100 chrVII:876175-878076 6.82e-01 100 chrVII:878588-879106 7.31e-01 100 chrVII:882784-883877 3.76e-01 100 chrVII:919996-920244 3.40e-01 100 chrVII:930843-931155 4.52e-11 12_[-1(8.32e-11)]_20_[-2(1.22e-07)]_\ 26 chrVII:1000332-1000604 5.50e-01 100 chrVII:1004039-1004426 3.34e-08 33_[+2(1.22e-07)]_21_[+1(2.49e-07)]_\ 4 chrVIII:34535-35121 4.20e-01 100 chrVIII:62533-63046 3.31e-06 15_[+2(1.66e-06)]_21_[+1(7.09e-07)]_\ 22 chrVIII:74908-75914 9.37e-01 100 chrVIII:103380-105378 2.27e-01 100 chrVIII:115872-116298 8.38e-01 100 chrVIII:125889-127482 5.74e-01 100 chrVIII:132796-133359 3.76e-09 7_[-1(4.74e-07)]_31_[-2(7.33e-09)]_\ 20 chrVIII:134070-134988 9.90e-01 100 chrVIII:144452-146788 8.84e-01 100 chrVIII:147866-149253 9.22e-01 100 chrVIII:174996-176095 8.56e-01 100 chrVIII:237748-238087 7.62e-03 51_[-2(1.97e-06)]_28 chrVIII:296739-297272 9.71e-01 100 chrVIII:358307-358941 4.79e-01 100 chrVIII:381502-383351 7.52e-02 100 chrVIII:388688-389226 4.02e-05 67_[-2(2.32e-08)]_12 chrVIII:451321-453000 1.04e-01 100 chrVIII:466906-467313 1.91e-01 100 chrVIII:475490-475912 1.14e-06 63_[-1(1.42e-10)]_16 chrVIII:505787-506229 8.73e-01 100 chrVIII:555077-555523 3.49e-01 100 chrVIII:555685-556458 9.63e-01 100 chrVIII:556857-557190 7.37e-01 100 chrX:59007-59371 2.62e-04 12_[-2(5.56e-08)]_67 chrX:73354-76512 7.62e-01 100 chrX:89886-90471 3.31e-01 100 chrX:115734-116231 1.87e-09 15_[-1(6.94e-10)]_21_[-2(7.08e-06)]_\ 22 chrX:156171-157860 1.98e-01 100 chrX:160022-160253 4.32e-01 100 chrX:197102-197528 2.88e-06 56_[-1(6.94e-10)]_23 chrX:204530-205078 1.46e-04 22_[+1(3.66e-08)]_57 chrX:233393-234123 5.62e-01 100 chrX:265304-265819 9.93e-01 100 chrX:354159-354489 7.33e-05 28_[+1(4.39e-08)]_51 chrX:355202-355919 9.35e-01 100 chrX:374190-374833 3.28e-15 13_[-2(1.81e-06)]_19_[-1(3.07e-09)]_\ [+3(1.70e-10)]_5 chrX:378123-378597 2.97e-11 49_[+2(5.56e-08)]_2_[-3(1.11e-10)]_\ 7 chrX:390924-391333 2.17e-03 16_[-2(2.53e-06)]_63 chrX:391802-392112 4.03e-04 74_[-3(1.21e-07)]_5 chrX:396560-397054 3.61e-04 18_[-2(1.22e-07)]_61 chrX:414744-415243 1.52e-17 22_[+2(6.37e-08)]_1_[-3(6.39e-10)]_\ [+1(8.32e-11)]_14 chrX:415698-416293 3.01e-03 70_[-2(7.08e-06)]_9 chrX:422715-423626 8.98e-01 100 chrX:424276-424739 4.66e-05 37_[-2(2.51e-07)]_42 chrX:517675-518097 2.10e-05 6_[+3(7.17e-06)]_[-2(4.66e-06)]_52 chrX:523769-524426 7.00e-05 25_[-2(7.33e-09)]_54 chrX:531598-532204 9.10e-07 17_[+1(8.32e-11)]_62 chrX:538435-538761 4.34e-15 6_[+2(2.24e-07)]_[-3(3.10e-09)]_\ [+1(1.84e-09)]_31 chrX:540957-541791 9.87e-01 100 chrX:542758-543258 3.86e-07 6_[-1(4.39e-08)]_38_[-2(8.61e-06)]_\ 14 chrX:545386-545768 5.12e-01 100 chrX:607639-608178 6.49e-01 100 chrX:617683-618517 5.30e-01 100 chrX:651214-651638 7.34e-01 100 chrX:651887-653075 5.86e-01 100 chrX:690579-690862 7.08e-01 100 chrX:702403-702642 3.92e-01 100 chrX:702942-703676 4.28e-01 100 chrX:745033-745749 2.16e-01 100 chrXI:780-1094 7.45e-01 100 chrXI:3841-7404 1.00e+00 100 chrXI:46007-46437 5.17e-01 100 chrXI:46706-47026 7.14e-01 100 chrXI:67749-68056 4.25e-01 100 chrXI:74414-74868 4.50e-08 32_[+2(7.24e-07)]_23_[+1(7.40e-08)]_\ 3 chrXI:84012-84442 8.53e-05 30_[+2(2.51e-07)]_49 chrXI:99732-99966 2.36e-01 100 chrXI:108600-110146 5.33e-01 100 chrXI:140816-141461 9.89e-01 100 chrXI:157899-159563 8.47e-01 100 chrXI:162430-162690 2.38e-11 6_[+3(1.70e-10)]_[-2(8.33e-08)]_52 chrXI:202318-203267 4.99e-01 100 chrXI:219581-220129 3.81e-01 100 chrXI:259143-259824 3.66e-02 100 chrXI:302704-303493 7.06e-01 100 chrXI:307945-308453 7.86e-17 3_[-1(3.07e-09)]_[+3(1.11e-10)]_2_\ [-2(5.56e-08)]_32 chrXI:312840-314001 4.91e-03 39_[-1(7.09e-07)]_40 chrXI:326421-327561 1.26e-03 30_[-2(3.90e-07)]_49 chrXI:334239-334980 5.79e-02 100 chrXI:379459-379925 2.97e-11 37_[+2(5.56e-08)]_2_[-3(1.11e-10)]_\ 19 chrXI:382185-382479 6.38e-02 100 chrXI:430805-432287 6.25e-01 100 chrXI:457590-458971 4.77e-01 100 chrXI:490742-491227 1.42e-13 33_[+2(2.24e-07)]_1_[-3(2.02e-09)]_\ [+1(1.11e-07)]_3 chrXI:512135-513518 8.03e-01 100 chrXI:517640-518173 7.10e-01 100 chrXI:578758-579305 8.25e-06 49_[+1(5.61e-09)]_30 chrXI:614174-614425 6.68e-01 100 chrXI:618748-619282 4.37e-01 100 chrXI:666498-666800 1.02e-01 100 chrXII:52-250 7.10e-01 100 chrXII:5573-5811 1.46e-01 100 chrXII:47815-49225 6.22e-02 38_[-2(4.83e-05)]_41 chrXII:92411-92724 4.34e-05 30_[+2(2.32e-08)]_49 chrXII:108616-108943 2.33e-01 100 chrXII:167712-168268 3.76e-09 12_[-1(4.74e-07)]_31_[-2(7.33e-09)]_\ 15 chrXII:198364-199614 4.68e-02 55_[-3(5.70e-05)]_24 chrXII:214691-215070 1.93e-06 61_[-1(1.00e-10)]_18 chrXII:232167-234216 3.21e-02 52_[+1(4.62e-05)]_27 chrXII:241621-242034 9.49e-01 100 chrXII:261088-263956 4.97e-01 100 chrXII:282587-283586 1.73e-01 100 chrXII:366021-366506 1.61e-01 100 chrXII:369379-370227 2.08e-01 100 chrXII:370623-370908 1.27e-02 100 chrXII:374190-374668 3.33e-04 18_[+1(1.11e-07)]_61 chrXII:424180-424491 6.65e-01 100 chrXII:426893-427428 1.25e-07 21_[+2(1.81e-06)]_21_[+1(3.66e-08)]_\ 16 chrXII:448507-448959 1.15e-04 17_[-2(1.44e-08)]_62 chrXII:459586-460748 1.49e-01 100 chrXII:498257-499703 7.69e-03 30_[-1(9.03e-05)]_49 chrXII:521474-522458 4.23e-01 100 chrXII:592362-592721 3.37e-01 100 chrXII:605165-605638 2.77e-06 60_[-2(5.12e-09)]_19 chrXII:628179-628646 3.34e-04 20_[+2(2.51e-07)]_59 chrXII:636741-639922 3.67e-02 24_[+1(3.74e-05)]_55 chrXII:645861-646043 1.18e-02 25_[+1(5.67e-05)]_54 chrXII:656830-657214 1.11e-05 13_[-2(1.03e-08)]_66 chrXII:673521-674575 3.60e-01 100 chrXII:687660-687910 6.72e-01 100 chrXII:710687-710898 7.98e-01 100 chrXII:713133-713643 7.28e-01 100 chrXII:732006-732305 1.34e-01 100 chrXII:734578-735002 1.24e-04 61_[+2(1.70e-08)]_18 chrXII:780798-781888 1.25e-01 32_[+1(9.03e-05)]_47 chrXII:783986-784520 8.38e-01 100 chrXII:793721-795221 9.22e-02 73_[+2(6.99e-05)]_6 chrXII:795670-797447 4.57e-01 100 chrXII:797614-797786 1.19e-01 100 chrXII:818503-820343 8.08e-01 100 chrXII:837905-839395 3.95e-01 100 chrXII:855832-857312 8.83e-01 100 chrXII:857513-857732 5.86e-01 100 chrXII:875152-876337 9.98e-01 100 chrXII:897156-898976 5.70e-02 24_[+3(2.44e-05)]_55 chrXII:903429-903760 9.98e-01 100 chrXII:921728-923150 7.86e-01 100 chrXII:932042-932546 5.50e-01 100 chrXII:962815-963289 1.04e-04 32_[-2(2.51e-07)]_47 chrXII:975801-976154 6.72e-04 64_[-1(7.40e-08)]_15 chrXII:1017514-1019588 6.71e-01 100 chrXII:1028189-1028601 7.71e-01 100 chrXII:1039122-1039421 4.66e-01 100 chrXII:1051907-1052229 2.00e-06 61_[-1(2.76e-10)]_18 chrXII:1064004-1064182 3.34e-01 100 chrXIII:91526-92090 5.36e-01 100 chrXIII:131520-132107 4.25e-06 70_[-1(3.07e-09)]_9 chrXIII:145679-147188 3.30e-01 100 chrXIII:163521-164277 1.95e-01 100 chrXIII:168268-169020 9.77e-01 100 chrXIII:195944-196309 2.30e-10 [-1(1.84e-09)]_52_[-2(2.32e-08)]_6 chrXIII:222693-224519 9.31e-01 100 chrXIII:225096-225964 7.21e-01 100 chrXIII:259007-259494 6.92e-05 18_[-2(7.33e-09)]_61 chrXIII:290585-291120 5.17e-07 40_[+1(6.94e-10)]_39 chrXIII:296734-298926 2.75e-01 100 chrXIII:302859-303127 1.18e-01 100 chrXIII:320968-321678 6.54e-01 100 chrXIII:352098-352501 9.55e-03 30_[+2(1.97e-06)]_49 chrXIII:362933-364095 7.33e-01 100 chrXIII:372190-372769 7.86e-17 24_[-1(3.07e-09)]_[+3(1.11e-10)]_2_\ [-2(5.56e-08)]_11 chrXIII:378886-379625 8.21e-01 100 chrXIII:420342-420860 4.45e-13 45_[-1(3.07e-09)]_[+3(1.11e-10)]_13 chrXIII:463427-463857 1.17e-04 3_[+1(3.66e-08)]_76 chrXIII:480410-481003 3.79e-05 16_[-2(6.37e-08)]_63 chrXIII:498758-501097 7.64e-01 100 chrXIII:504646-505213 1.24e-03 15_[+2(2.51e-07)]_64 chrXIII:550007-552375 1.74e-01 100 chrXIII:572608-573238 3.13e-08 18_[-1(1.30e-07)]_[+3(8.17e-05)]_1_\ [-2(2.53e-06)]_18 chrXIII:586405-586900 2.90e-12 42_[-1(3.07e-09)]_[+3(1.11e-10)]_16 chrXIII:650842-651882 6.78e-01 100 chrXIII:671922-674738 8.09e-01 100 chrXIII:731994-733453 2.54e-01 100 chrXIII:747551-748164 6.41e-01 100 chrXIII:753039-755155 6.87e-01 100 chrXIII:768176-768452 8.25e-01 100 chrXIII:808081-808524 3.24e-09 2_[-1(3.03e-08)]_21_[-2(1.44e-08)]_\ 35 chrXIII:837714-838173 2.60e-02 34_[+2(8.61e-06)]_45 chrXIV:61950-64406 2.40e-01 100 chrXIV:95981-96467 1.25e-05 75_[-1(8.03e-10)]_4 chrXIV:102573-103588 8.36e-01 100 chrXIV:104608-105096 1.94e-09 2_[+2(5.56e-08)]_22_[+1(4.01e-08)]_\ 34 chrXIV:241378-242161 6.85e-04 70_[-3(4.38e-07)]_9 chrXIV:302607-303829 7.32e-01 100 chrXIV:330756-331405 3.35e-01 100 chrXIV:374707-375082 1.61e-03 24_[+2(1.52e-06)]_55 chrXIV:442853-444826 4.17e-01 100 chrXIV:493949-495754 8.04e-01 100 chrXIV:499166-499492 9.91e-01 100 chrXIV:499670-500684 8.25e-01 100 chrXIV:518664-519137 3.86e-01 100 chrXIV:546551-547443 1.83e-01 100 chrXIV:560445-560864 7.10e-01 100 chrXIV:568051-568499 4.20e-01 100 chrXIV:569609-570061 8.87e-01 100 chrXIV:602068-602573 7.59e-06 41_[+2(1.70e-08)]_38 chrXIV:631671-632018 1.86e-09 60_[-1(2.86e-13)]_19 chrXIV:632493-632886 1.71e-05 3_[+1(7.40e-08)]_76 chrXIV:725668-726361 9.51e-01 100 chrXIV:783729-784327 3.76e-01 100 chrXV:79715-80173 6.07e-01 100 chrXV:80358-81482 7.87e-01 100 chrXV:92805-94804 2.81e-01 100 chrXV:109554-110659 7.87e-01 100 chrXV:110855-111204 3.38e-04 33_[-2(3.63e-08)]_46 chrXV:113484-113885 3.87e-01 100 chrXV:161104-161734 9.36e-01 100 chrXV:167969-168498 1.02e-01 100 chrXV:216274-216713 6.42e-01 100 chrXV:226455-226871 6.32e-11 6_[-1(8.32e-11)]_20_[-2(1.22e-07)]_\ 32 chrXV:228079-228555 4.20e-03 63_[+2(7.24e-07)]_16 chrXV:252899-253654 7.79e-01 100 chrXV:253816-254701 5.16e-01 100 chrXV:274440-274985 1.95e-06 10_[+2(6.13e-09)]_69 chrXV:281953-282913 3.86e-01 100 chrXV:287156-288413 7.45e-01 100 chrXV:300886-301919 9.08e-01 100 chrXV:302126-302355 2.46e-01 100 chrXV:340140-340618 1.98e-03 21_[-2(2.24e-07)]_58 chrXV:353889-354320 7.29e-05 38_[-2(5.56e-08)]_41 chrXV:438417-439478 3.04e-01 100 chrXV:444648-446142 6.60e-01 100 chrXV:464276-464816 1.43e-05 25_[+1(1.84e-09)]_54 chrXV:487437-487763 5.56e-01 100 chrXV:505032-505521 1.57e-01 100 chrXV:571693-572284 2.37e-07 19_[+2(1.81e-06)]_21_[+1(3.66e-08)]_\ 18 chrXV:594229-594638 2.51e-04 21_[-2(3.13e-08)]_58 chrXV:619637-621278 8.01e-01 100 chrXV:639173-639441 4.14e-01 100 chrXV:663042-664079 7.91e-01 100 chrXV:678218-679318 9.67e-01 100 chrXV:710060-710484 6.77e-02 25_[-1(6.25e-05)]_54 chrXV:723026-724650 8.55e-02 62_[-1(5.67e-05)]_17 chrXV:779669-780904 7.61e-01 100 chrXV:854052-854814 5.64e-01 100 chrXV:866490-867958 7.10e-01 100 chrXV:881792-882360 6.87e-01 100 chrXV:901411-901634 7.86e-01 100 chrXV:968114-968476 1.97e-01 100 chrXV:976376-976668 4.84e-01 100 chrXV:978813-979174 5.99e-01 100 chrXV:979736-981395 8.06e-01 100 chrXV:1003976-1004441 4.55e-01 100 chrXV:1025702-1026081 1.65e-01 100 chrXV:1027953-1029412 6.54e-01 100 chrXVI:55880-56350 7.79e-01 100 chrXVI:75588-77101 9.28e-01 100 chrXVI:172838-173856 9.32e-01 100 chrXVI:188592-189249 8.12e-01 100 chrXVI:210008-210574 1.26e-03 1_[-2(7.08e-06)]_78 chrXVI:279945-280221 6.87e-01 100 chrXVI:281589-282971 8.40e-01 100 chrXVI:302628-304006 1.30e-01 100 chrXVI:338710-339184 3.55e-03 1_[-2(4.66e-06)]_78 chrXVI:340066-340321 2.65e-01 100 chrXVI:340537-340778 1.08e-01 100 chrXVI:378645-379015 5.91e-01 100 chrXVI:406183-406651 8.98e-01 100 chrXVI:432586-434391 3.47e-01 100 chrXVI:435669-436199 5.30e-08 17_[-1(2.33e-07)]_21_[-2(5.56e-08)]_\ 20 chrXVI:519998-520550 8.56e-01 100 chrXVI:559986-560473 6.32e-04 27_[-1(5.25e-08)]_52 chrXVI:571946-572530 7.51e-01 100 chrXVI:581849-582333 1.52e-17 20_[+2(6.37e-08)]_1_[-3(6.39e-10)]_\ [+1(8.32e-11)]_16 chrXVI:622308-622843 4.08e-04 23_[-1(5.25e-08)]_56 chrXVI:689345-689881 2.29e-08 1_[+2(3.52e-09)]_31_[+1(1.63e-06)]_\ 26 chrXVI:699498-700691 1.94e-01 100 chrXVI:731897-732639 5.44e-01 100 chrXVI:744079-744628 2.59e-04 22_[+1(2.49e-07)]_57 chrXVI:768383-769483 1.74e-01 100 chrXVI:775611-776063 3.80e-04 28_[-2(5.56e-08)]_51 chrXVI:794451-795161 7.53e-01 100 chrXVI:810573-811385 4.75e-01 100 chrXVI:819314-820351 1.85e-01 100 chrXVI:856806-857107 2.58e-06 38_[+1(6.94e-10)]_41 chrXVI:860136-860691 6.32e-11 15_[+2(1.22e-07)]_20_[+1(8.32e-11)]_\ 23 chrXVI:866509-866745 8.46e-01 100 chrXVI:880105-880562 1.86e-12 21_[-1(2.76e-10)]_23_[-2(1.70e-08)]_\ 14 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************