******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YAP3/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:333305-334221 1.0000 100 chrVIII:100741-101474 1.0000 100 chrXV:87432-88276 1.0000 100 chrVI:226493-226961 1.0000 100 chrXI:112793-114679 1.0000 100 chrI:150807-151135 1.0000 100 chrIV:1233338-1234334 1.0000 100 chrXVI:821644-822090 1.0000 100 chrXIII:630699-635127 1.0000 100 chrVII:422895-423578 1.0000 100 chrVII:310691-312701 1.0000 100 chrXI:258681-258926 1.0000 100 chrIV:592505-592815 1.0000 100 chrIII:142049-143282 1.0000 100 chrXVI:529639-533371 1.0000 100 chrIV:974111-974775 1.0000 100 chrXI:411962-413268 1.0000 100 chrIX:255048-257114 1.0000 100 chrXIV:568064-568435 1.0000 100 chrIV:884296-884563 1.0000 100 chrXII:265685-266631 1.0000 100 chrIX:248745-248928 1.0000 100 chrII:306922-307357 1.0000 100 chrXI:312019-313582 1.0000 100 chrXVI:303043-305011 1.0000 100 chrVII:319038-320128 1.0000 100 chrXV:805241-806668 1.0000 100 chrXI:579871-580167 1.0000 100 chrVII:784202-785310 1.0000 100 chrXV:867123-868022 1.0000 100 chrXIII:161738-164340 1.0000 100 chrV:99756-100263 1.0000 100 chrXVI:627245-627492 1.0000 100 chrII:591196-591791 1.0000 100 chrIV:757466-758436 1.0000 100 chrXV:778168-779410 1.0000 100 chrII:234428-235992 1.0000 100 chrXIII:753003-754263 1.0000 100 chrVI:210424-210921 1.0000 100 chrXII:665118-665429 1.0000 100 chrVIII:132561-133338 1.0000 100 chrX:422716-422816 1.0000 100 chrVII:255181-255733 1.0000 100 chrVIII:361988-362726 1.0000 100 chrXII:809712-815767 1.0000 100 chrXIII:352065-352605 1.0000 100 chrXIV:215700-217130 1.0000 100 chrXIV:661130-661796 1.0000 100 chrVII:363882-364435 1.0000 100 chrXVI:775666-776044 1.0000 100 chrXIII:123085-124150 1.0000 100 chrIV:1417129-1417517 1.0000 100 chrXV:710094-710526 1.0000 100 chrXIII:300842-302550 1.0000 100 chrVII:828250-828983 1.0000 100 chrXI:490774-491297 1.0000 100 chrX:374186-374286 1.0000 100 chrVI:180634-181876 1.0000 100 chrXVI:412389-413860 1.0000 100 chrVI:43352-44444 1.0000 100 chrII:45598-46614 1.0000 100 chrXII:796980-797255 1.0000 100 chrII:326334-327190 1.0000 100 chrX:651898-651998 1.0000 100 chrV:223222-224979 1.0000 100 chrIV:1016935-1017669 1.0000 100 chrVII:149242-150599 1.0000 100 chrXIII:480395-480942 1.0000 100 chrXIV:96017-96425 1.0000 100 chrIII:107079-107815 1.0000 100 chrXII:451448-451646 1.0000 100 chrVII:930306-931131 1.0000 100 chrXI:84036-84401 1.0000 100 chrII:87935-88602 1.0000 100 chrXII:1017426-1018955 1.0000 100 chrIII:162086-163325 1.0000 100 chrV:282923-284295 1.0000 100 chrXII:368505-370255 1.0000 100 chrIV:1162590-1164746 1.0000 100 chrXII:151062-151891 1.0000 100 chrVII:205112-206121 1.0000 100 chrXVI:578460-581174 1.0000 100 chrIII:167965-168519 1.0000 100 chrIII:78376-78875 1.0000 100 chrVII:786754-788024 1.0000 100 chrXII:366056-366547 1.0000 100 chrII:165184-165429 1.0000 100 chrXII:898110-899713 1.0000 100 chrXV:1073447-1073861 1.0000 100 chrVIII:34412-36138 1.0000 100 chrVII:23873-26158 1.0000 100 chrX:745132-745232 1.0000 100 chrXVI:172973-174132 1.0000 100 chrVII:798522-800229 1.0000 100 chrXV:281827-283490 1.0000 100 chrVII:736208-737171 1.0000 100 chrXVI:406597-407788 1.0000 100 chrXII:498816-500099 1.0000 100 chrXVI:819162-819914 1.0000 100 chrVIII:381475-382763 1.0000 100 chrV:441893-442672 1.0000 100 chrXI:617251-618760 1.0000 100 chrXVI:654098-655270 1.0000 100 chrIV:117625-118234 1.0000 100 chrII:236501-237370 1.0000 100 chrIII:102032-102930 1.0000 100 chrVIII:62124-63191 1.0000 100 chrXVI:911407-912229 1.0000 100 chrXIII:131499-132078 1.0000 100 chrXV:226603-226853 1.0000 100 chrXIII:259085-259436 1.0000 100 chrIX:183320-183854 1.0000 100 chrV:469248-470519 1.0000 100 chrVII:1035-2284 1.0000 100 chrV:78063-80057 1.0000 100 chrIV:802591-802823 1.0000 100 chrXV:663344-664879 1.0000 100 chrXII:962863-963252 1.0000 100 chrIX:127849-129862 1.0000 100 chrXV:594331-594643 1.0000 100 chrVII:774224-774521 1.0000 100 chrXIII:702160-703331 1.0000 100 chrVIII:162763-163472 1.0000 100 chrXVI:878870-880543 1.0000 100 chrV:362692-363295 1.0000 100 chrVII:555739-557566 1.0000 100 chrXVI:136355-136806 1.0000 100 chrXIII:808071-808513 1.0000 100 chrXV:899795-901242 1.0000 100 chrX:521760-521860 1.0000 100 chrVII:703337-706626 1.0000 100 chrX:414825-414925 1.0000 100 chrXII:605242-605591 1.0000 100 chrXII:214674-215041 1.0000 100 chrXVI:794954-796124 1.0000 100 chrXIII:747712-748508 1.0000 100 chrXIV:546530-547469 1.0000 100 chrIV:1310777-1312074 1.0000 100 chrVII:609360-610012 1.0000 100 chrXI:431841-433017 1.0000 100 chrXI:307961-308649 1.0000 100 chrV:287450-287612 1.0000 100 chrXI:518905-521082 1.0000 100 chrXV:796999-798879 1.0000 100 chrX:420770-420870 1.0000 100 chrXIII:731404-733281 1.0000 100 chrVII:545201-546057 1.0000 100 chrX:538531-538631 1.0000 100 chrXI:100242-106904 1.0000 100 chrIV:488484-488957 1.0000 100 chrXIV:88898-89959 1.0000 100 chrVII:998006-998696 1.0000 100 chrXIII:586412-587091 1.0000 100 chrXIII:146441-147254 1.0000 100 chrII:680376-681927 1.0000 100 chrV:298852-302113 1.0000 100 chrVII:661545-661882 1.0000 100 chrX:155987-156087 1.0000 100 chrXVI:537442-537985 1.0000 100 chrXII:459633-460754 1.0000 100 chrI:65772-67895 1.0000 100 chrXIII:463456-463854 1.0000 100 chrVI:157921-158510 1.0000 100 chrIII:90794-91064 1.0000 100 chrII:350636-350949 1.0000 100 chrXII:374216-374774 1.0000 100 chrXIII:91420-92090 1.0000 100 chrVIII:145274-146748 1.0000 100 chrX:523607-523707 1.0000 100 chrXV:252830-253664 1.0000 100 chrX:348754-348854 1.0000 100 chrXV:287155-287385 1.0000 100 chrXI:379524-379921 1.0000 100 chrXIV:229598-230802 1.0000 100 chrVIII:134048-134774 1.0000 100 chrXIV:627807-629129 1.0000 100 chrII:604391-605794 1.0000 100 chrXIV:575067-576269 1.0000 100 chrX:396390-396490 1.0000 100 chrVI:167278-167755 1.0000 100 chrXII:975804-976096 1.0000 100 chrXVI:842338-842585 1.0000 100 chrII:81534-83928 1.0000 100 chrIV:1075341-1075756 1.0000 100 chrI:151331-151975 1.0000 100 chrIV:1363921-1364498 1.0000 100 chrXI:109299-110460 1.0000 100 chrIX:386691-386877 1.0000 100 chrV:85214-86776 1.0000 100 chrXII:627686-628984 1.0000 100 chrXII:515335-516871 1.0000 100 chrVII:938899-939645 1.0000 100 chrXII:837657-839411 1.0000 100 chrXII:64341-66040 1.0000 100 chrII:266227-266741 1.0000 100 chrVIII:126482-127900 1.0000 100 chrXV:113445-113871 1.0000 100 chrX:540651-540751 1.0000 100 chrIV:992710-993211 1.0000 100 chrV:207421-208310 1.0000 100 chrIV:809664-810372 1.0000 100 chrXIV:61517-62928 1.0000 100 chrXIII:296925-298913 1.0000 100 chrXIV:619482-620099 1.0000 100 chrVII:648759-649332 1.0000 100 chrIV:229879-230741 1.0000 100 chrVI:137263-137786 1.0000 100 chrX:384183-384283 1.0000 100 chrVII:597569-598797 1.0000 100 chrXIV:631533-631985 1.0000 100 chrXVI:581827-582477 1.0000 100 chrV:101812-102954 1.0000 100 chrXVI:559942-560443 1.0000 100 chrIX:325496-326066 1.0000 100 chrXV:438391-439506 1.0000 100 chrXII:1028809-1030261 1.0000 100 chrV:435663-435926 1.0000 100 chrXVI:435116-436238 1.0000 100 chrV:396749-397959 1.0000 100 chrXV:407526-408225 1.0000 100 chrXIII:748691-748902 1.0000 100 chrV:151225-152717 1.0000 100 chrXVI:689289-689821 1.0000 100 chrXVI:194124-194627 1.0000 100 chrX:384600-384700 1.0000 100 chrXIV:24150-26535 1.0000 100 chrVII:110372-110760 1.0000 100 chrXII:793769-796381 1.0000 100 chrIX:316727-318295 1.0000 100 chrIX:98199-99462 1.0000 100 chrIV:1305331-1306412 1.0000 100 chrIV:465186-470835 1.0000 100 chrVII:700273-701132 1.0000 100 chrII:347436-347917 1.0000 100 chrXII:282770-283860 1.0000 100 chrIII:150970-151637 1.0000 100 chrIX:300031-300781 1.0000 100 chrIV:1441451-1443002 1.0000 100 chrXIII:587273-587442 1.0000 100 chrV:16397-17772 1.0000 100 chrIV:181259-181798 1.0000 100 chrXI:591545-592303 1.0000 100 chrX:517681-517781 1.0000 100 chrII:301119-301604 1.0000 100 chrXV:619285-621295 1.0000 100 chrVII:398502-400163 1.0000 100 chrII:420431-420747 1.0000 100 chrVIII:358289-358792 1.0000 100 chrIII:123508-123762 1.0000 100 chrX:612363-612463 1.0000 100 chrIV:1329091-1329985 1.0000 100 chrIII:190747-192339 1.0000 100 chrXII:546155-547561 1.0000 100 chrXIII:195950-196278 1.0000 100 chrV:510567-512298 1.0000 100 chrX:59018-59118 1.0000 100 chrXVI:744106-744503 1.0000 100 chrV:550932-551582 1.0000 100 chrII:197143-197796 1.0000 100 chrXIII:288068-289690 1.0000 100 chrXV:651046-651722 1.0000 100 chrV:138500-140741 1.0000 100 chrXVI:209988-210536 1.0000 100 chrXVI:282069-283276 1.0000 100 chrXIII:290627-291233 1.0000 100 chrVII:806028-807766 1.0000 100 chrV:423524-424411 1.0000 100 chrXIII:754552-755464 1.0000 100 chrXIV:626063-627105 1.0000 100 chrXVI:700441-700707 1.0000 100 chrIV:601220-602338 1.0000 100 chrXII:875257-875884 1.0000 100 chrXIII:551482-551692 1.0000 100 chrVII:438995-440090 1.0000 100 chrXVI:338758-339366 1.0000 100 chrIV:540619-541921 1.0000 100 chrI:24978-25467 1.0000 100 chrXIV:104628-105163 1.0000 100 chrXIII:557461-557949 1.0000 100 chrXI:578773-579629 1.0000 100 chrXIV:480721-481279 1.0000 100 chrXV:159285-160140 1.0000 100 chrIII:229106-230894 1.0000 100 chrVII:277475-278755 1.0000 100 chrXII:732024-732250 1.0000 100 chrIV:1031954-1032118 1.0000 100 chrX:265292-265392 1.0000 100 chrXI:302658-303210 1.0000 100 chrVII:823368-823674 1.0000 100 chrV:249788-250706 1.0000 100 chrVIII:374899-375091 1.0000 100 chrV:433288-434198 1.0000 100 chrXI:158617-159893 1.0000 100 chrVII:466020-466945 1.0000 100 chrII:413340-415274 1.0000 100 chrIV:626362-628395 1.0000 100 chrIII:471-1264 1.0000 100 chrXV:815366-815946 1.0000 100 chrXV:677617-678891 1.0000 100 chrXV:274513-275016 1.0000 100 chrIX:316212-316487 1.0000 100 chrXI:334087-334989 1.0000 100 chrVII:519386-521201 1.0000 100 chrX:355215-355315 1.0000 100 chrXII:784188-784461 1.0000 100 chrXI:257861-258296 1.0000 100 chrXII:522678-523603 1.0000 100 chrXI:140830-143070 1.0000 100 chrI:166192-166809 1.0000 100 chrX:647394-647494 1.0000 100 chrXIII:511350-512046 1.0000 100 chrVII:875966-877955 1.0000 100 chrXVI:377848-378452 1.0000 100 chrVII:122077-122655 1.0000 100 chrXIV:721168-723201 1.0000 100 chrIV:1466524-1467140 1.0000 100 chrXII:92429-92647 1.0000 100 chrXI:778-1095 1.0000 100 chrVII:738756-739316 1.0000 100 chrII:227634-231471 1.0000 100 chrXIII:498780-500770 1.0000 100 chrII:36254-36519 1.0000 100 chrXII:201635-202680 1.0000 100 chrIII:73823-74866 1.0000 100 chrXVI:425788-425972 1.0000 100 chrIX:388870-390961 1.0000 100 chrXI:364583-365266 1.0000 100 chrXVI:121948-125076 1.0000 100 chrXV:380702-381050 1.0000 100 chrXIV:656302-660390 1.0000 100 chrIX:174669-175428 1.0000 100 chrXIV:493690-495043 1.0000 100 chrVIII:147632-148734 1.0000 100 chrX:617700-617800 1.0000 100 chrXV:779866-780956 1.0000 100 chrV:135226-135610 1.0000 100 chrXIII:892875-895203 1.0000 100 chrXV:1027626-1029530 1.0000 100 chrII:237909-238109 1.0000 100 chrXV:60380-60669 1.0000 100 chrII:477165-477775 1.0000 100 chrIV:1150713-1151168 1.0000 100 chrXIII:886997-889572 1.0000 100 chrXIII:572575-573221 1.0000 100 chrXII:656859-657222 1.0000 100 chrXV:622105-622353 1.0000 100 chrXVI:718245-719493 1.0000 100 chrVII:846903-848198 1.0000 100 chrVII:824219-827331 1.0000 100 chrV:363665-364648 1.0000 100 chrIV:913973-914858 1.0000 100 chrVI:162044-162375 1.0000 100 chrX:204443-204543 1.0000 100 chrX:390937-391037 1.0000 100 chrXV:832284-832844 1.0000 100 chrIV:1487641-1490350 1.0000 100 chrXV:571579-572357 1.0000 100 chrXI:208132-208310 1.0000 100 chrXVI:768537-769456 1.0000 100 chrVIII:451243-453052 1.0000 100 chrIX:336098-336618 1.0000 100 chrX:354188-354288 1.0000 100 chrXV:540317-543914 1.0000 100 chrVII:316761-317416 1.0000 100 chrXII:734597-734919 1.0000 100 chrXIII:372188-372745 1.0000 100 chrIV:570920-572804 1.0000 100 chrXVI:404793-406029 1.0000 100 chrIV:359371-359780 1.0000 100 chrIV:1352340-1355606 1.0000 100 chrVII:328377-329806 1.0000 100 chrIV:1151850-1153424 1.0000 100 chrXI:325915-327568 1.0000 100 chrX:396050-396150 1.0000 100 chrXIII:320946-321642 1.0000 100 chrV:176907-177509 1.0000 100 chrIV:322188-323591 1.0000 100 chrIX:395820-397116 1.0000 100 chrXI:513297-513483 1.0000 100 chrXII:198370-199705 1.0000 100 chrXIII:378900-379593 1.0000 100 chrVI:19291-19595 1.0000 100 chrVIII:555747-556340 1.0000 100 chrXI:558281-559479 1.0000 100 chrIV:1157481-1158501 1.0000 100 chrIV:1201481-1201967 1.0000 100 chrVII:544408-544929 1.0000 100 chrVII:726947-728662 1.0000 100 chrXIII:362961-364413 1.0000 100 chrXI:208558-210043 1.0000 100 chrIV:416295-417528 1.0000 100 chrXIII:650536-652929 1.0000 100 chrXI:458471-459352 1.0000 100 chrXVI:810603-810905 1.0000 100 chrIV:234315-234498 1.0000 100 chrIV:765075-765490 1.0000 100 chrV:311761-312283 1.0000 100 chrX:531453-531553 1.0000 100 chrX:73550-73650 1.0000 100 chrXIII:504663-505197 1.0000 100 chrXIV:505989-507626 1.0000 100 chrVII:596097-596289 1.0000 100 chrXV:842378-842916 1.0000 100 chrVII:914761-915275 1.0000 100 chrXIV:499602-500765 1.0000 100 chrXV:353670-354491 1.0000 100 chrIV:1443705-1444200 1.0000 100 chrIX:197160-198033 1.0000 100 chrXV:92699-94471 1.0000 100 chrV:438532-438996 1.0000 100 chrVIII:212114-212378 1.0000 100 chrIII:295373-295954 1.0000 100 chrXII:780416-781832 1.0000 100 chrXII:166407-167404 1.0000 100 chrIV:720578-721609 1.0000 100 chrVII:771753-773634 1.0000 100 chrXII:592361-592700 1.0000 100 chrXIV:715457-716649 1.0000 100 chrII:481511-483082 1.0000 100 chrVII:844355-845987 1.0000 100 chrIV:1175634-1176054 1.0000 100 chrIV:1200893-1201128 1.0000 100 chrVI:64017-64957 1.0000 100 chrXV:444608-446202 1.0000 100 chrXI:282814-284828 1.0000 100 chrVII:730972-731406 1.0000 100 chrV:130820-131355 1.0000 100 chrIX:336874-337044 1.0000 100 chrVI:191129-191727 1.0000 100 chrXIII:554808-556696 1.0000 100 chrX:442455-442555 1.0000 100 chrXIV:282059-283715 1.0000 100 chrIV:220586-222172 1.0000 100 chrVII:857094-857581 1.0000 100 chrXIV:302646-303926 1.0000 100 chrIV:846820-847608 1.0000 100 chrIV:45246-46148 1.0000 100 chrXIV:576655-577452 1.0000 100 chrV:378526-379492 1.0000 100 chrXVI:858989-860628 1.0000 100 chrVII:184192-185791 1.0000 100 chrV:306261-306931 1.0000 100 chrXV:505701-506930 1.0000 100 chrXV:854017-854874 1.0000 100 chrIV:118445-118824 1.0000 100 chrIV:1095194-1095700 1.0000 100 chrV:322044-323088 1.0000 100 chrXIII:837700-838200 1.0000 100 chrV:67075-68883 1.0000 100 chrXII:426884-427438 1.0000 100 chrIII:227724-228191 1.0000 100 chrVII:287246-287944 1.0000 100 chrIII:13997-16919 1.0000 100 chrXI:162451-162776 1.0000 100 chrIV:170640-171527 1.0000 100 chrIV:945809-946648 1.0000 100 chrXV:976393-978348 1.0000 100 chrV:61066-62128 1.0000 100 chrII:227005-227337 1.0000 100 chrXII:625185-625976 1.0000 100 chrVII:541746-542150 1.0000 100 chrX:542776-542876 1.0000 100 chrII:168359-169708 1.0000 100 chrXII:449682-450604 1.0000 100 chrVIII:410937-411746 1.0000 100 chrVIII:383055-383240 1.0000 100 chrXIII:222566-223876 1.0000 100 chrXII:930585-931797 1.0000 100 chrIII:308611-308988 1.0000 100 chrVIII:491919-493703 1.0000 100 chrX:663669-663769 1.0000 100 chrII:256170-257694 1.0000 100 chrXIII:551924-553554 1.0000 100 chrXIV:392084-392889 1.0000 100 chrV:266314-268131 1.0000 100 chrXIV:602055-602549 1.0000 100 chrVII:479042-482922 1.0000 100 chrVII:147965-149006 1.0000 100 chrX:435630-435730 1.0000 100 chrX:609262-609362 1.0000 100 chrXVI:731605-731849 1.0000 100 chrXII:710849-712814 1.0000 100 chrVIII:504229-504590 1.0000 100 chrXII:448500-448984 1.0000 100 chrXV:300808-301607 1.0000 100 chrXVI:829857-830595 1.0000 100 chrVII:648043-648485 1.0000 100 chrIV:437552-438098 1.0000 100 chrIV:892036-892688 1.0000 100 chrIV:619650-620872 1.0000 100 chrVIII:388675-389196 1.0000 100 chrVI:101430-101856 1.0000 100 chrXIV:403111-404887 1.0000 100 chrII:405677-406367 1.0000 100 chrIX:370269-370568 1.0000 100 chrII:444715-445742 1.0000 100 chrIII:120273-121733 1.0000 100 chrV:141111-141332 1.0000 100 chrIV:331112-332937 1.0000 100 chrXVI:649099-650022 1.0000 100 chrXVI:730835-731315 1.0000 100 chrVII:610438-610995 1.0000 100 chrVIII:237750-238067 1.0000 100 chrV:424606-425463 1.0000 100 chrXIV:442886-444247 1.0000 100 chrXV:228005-228520 1.0000 100 chrXIII:626147-626982 1.0000 100 chrVII:411966-412577 1.0000 100 chrIV:579335-581307 1.0000 100 chrIV:491472-492652 1.0000 100 chrXIII:420345-420773 1.0000 100 chrIX:323992-324934 1.0000 100 chrIII:178492-178796 1.0000 100 chrVIII:554199-554763 1.0000 100 chrIV:434027-435133 1.0000 100 chrXII:88158-88497 1.0000 100 chrXVI:572017-572630 1.0000 100 chrXIV:585422-586630 1.0000 100 chrV:287875-289014 1.0000 100 chrII:478961-479609 1.0000 100 chrXIV:725641-726324 1.0000 100 chrXVI:813130-813613 1.0000 100 chrIV:504328-505181 1.0000 100 chrXVI:351997-352560 1.0000 100 chrXV:606863-608330 1.0000 100 chrIV:1301569-1302630 1.0000 100 chrXII:636681-640004 1.0000 100 chrI:71692-73688 1.0000 100 chrIX:96793-97451 1.0000 100 chrVIII:375256-377073 1.0000 100 chrXV:622564-623336 1.0000 100 chrXVI:432482-434531 1.0000 100 chrIV:1461354-1461816 1.0000 100 chrVII:115271-115707 1.0000 100 chrXV:110079-111089 1.0000 100 chrX:424353-424453 1.0000 100 chrXV:487500-487739 1.0000 100 chrXIV:374743-375078 1.0000 100 chrXV:827890-830621 1.0000 100 chrVII:364868-366675 1.0000 100 chrXVI:371015-372959 1.0000 100 chrXIV:63264-64527 1.0000 100 chrVIII:104482-105524 1.0000 100 chrXI:163273-164462 1.0000 100 chrVII:899584-901052 1.0000 100 chrXII:573211-573461 1.0000 100 chrIV:209968-210613 1.0000 100 chrIV:1236389-1238891 1.0000 100 chrVII:76969-78278 1.0000 100 chrXIII:425127-425925 1.0000 100 chrXII:348063-348722 1.0000 100 chrII:6790-7088 1.0000 100 chrXIV:253207-254162 1.0000 100 chrXIII:19015-20497 1.0000 100 chrIII:149734-150215 1.0000 100 chrIV:555444-556620 1.0000 100 chrVI:222714-223810 1.0000 100 chrXVI:451767-453275 1.0000 100 chrVII:533262-535099 1.0000 100 chrXV:287641-288356 1.0000 100 chrIV:929246-930391 1.0000 100 chrXI:430554-431291 1.0000 100 chrXVI:74988-76300 1.0000 100 chrVII:1048660-1050077 1.0000 100 chrXIII:701697-701908 1.0000 100 chrXV:32923-33918 1.0000 100 chrXV:877722-878077 1.0000 100 chrV:117479-118177 1.0000 100 chrIV:1360114-1361121 1.0000 100 chrX:172738-172838 1.0000 100 chrXI:46725-47004 1.0000 100 chrX:90673-90773 1.0000 100 chrV:431052-431914 1.0000 100 chrXII:855753-857717 1.0000 100 chrIV:129006-130825 1.0000 100 chrIV:519677-520503 1.0000 100 chrVII:345860-346705 1.0000 100 chrV:6488-6803 1.0000 100 chrXV:723210-724651 1.0000 100 chrIV:568732-569504 1.0000 100 chrX:122172-122272 1.0000 100 chrIV:1205439-1206298 1.0000 100 chrIV:1402161-1403461 1.0000 100 chrVII:971825-974017 1.0000 100 chrXI:517784-518052 1.0000 100 chrIV:526994-527538 1.0000 100 chrXVI:692821-694646 1.0000 100 chrX:115812-115912 1.0000 100 chrVII:781857-783983 1.0000 100 chrXII:167739-168229 1.0000 100 chrVII:611169-611494 1.0000 100 chrV:486320-487585 1.0000 100 chrV:269112-269863 1.0000 100 chrXVI:55903-56331 1.0000 100 chrVII:440689-441330 1.0000 100 chrXII:242218-243527 1.0000 100 chrX:196216-196316 1.0000 100 chrII:254593-255832 1.0000 100 chrXV:160417-160735 1.0000 100 chrX:608331-608431 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YAP3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YAP3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YAP3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.308 C 0.192 G 0.192 T 0.308 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YAP3/background): A 0.314 C 0.186 G 0.186 T 0.314 ******************************************************************************** ******************************************************************************** MOTIF SGGTTCGADYCCSSBHGDGRKCDWTTTTTT MEME-1 width = 30 sites = 46 llr = 925 E-value = 1.3e-159 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGGTTCGADYCCSSBHGDGRKCDWTTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 13::::3a3::::2:31324:1432211:: pos.-specific C 3::::a::24a75333221128:1:1:11: probability G 57a:::7:2:::343:54554:4::::::1 matrix T :::aa:::36:32144222:3:25779898 bits 2.4 * 2.2 * * * 1.9 * * * 1.7 ** * * * * Relative 1.5 ***** * * * Entropy 1.2 ******* ** * * * (29.0 bits) 1.0 ******* **** * *** 0.7 ******** **** * **** 0.5 ******** ****** * **** ******* 0.2 ******** ********************* 0.0 ------------------------------ Multilevel GGGTTCGATTCCCGTTGGGGGCATTTTTTT consensus CA A AC TGCGACAAAT GAA sequence G CC T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGTTCGADYCCSSBHGDGRKCDWTTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrV:550932-551582 - 71 5.05e-13 . CGGTTCGATCCCGCTAGAGACCAATTTTTT TGAAAATCGT chrV:135226-135610 - 50 5.94e-13 ATAAGGTTAG GGGTTCGAGCCCCCTACAGGGCTTTCTTTT TCTCCGAAAA chrIII:150970-151637 - 24 5.94e-13 ATAAGGTTAG GGGTTCGAGCCCCCTACAGGGCTTTCTTTT TTCTTGGAAA chrV:435663-435926 - 1 5.94e-13 ATAAGGTTAG GGGTTCGAGCCCCCTACAGGGCTTTCTTTT chrXVI:581827-582477 + 10 5.94e-13 TAAGGTTAG GGGTTCGAGCCCCCTACAGGGCTTTCTTTT TTATTGCATG chrVII:122077-122655 + 3 4.83e-12 AG GGGTTCGAGCCCCCTACAGGGCTATTCTTT TTTTGTTCTA chrII:405677-406367 + 37 9.48e-12 TGCCAGATCG GGGTTCAATTCCCCGTCGCGGAGATTTTTT TGGCTACTCC chrIX:336098-336618 - 34 9.48e-12 TGCCAGATCG GGGTTCAATTCCCCGTCGCGGAGATTTTTT TACCATAACT chrV:130820-131355 - 38 1.08e-11 CGAACAACCC CGGTTCGAATCCGGGTAAGACCTATTTTTT TCCCCCGCTC chrVI:137263-137786 - 5 1.08e-11 GCAAGATCGT GAGTTCAACCCTCACTGGGGTCGTTTTTTT ATTC chrVIII:134048-134774 + 9 1.40e-11 GACAACCC CGGTTCGAATCCGGGTAGGACCTTTTTTTG CTAAAATGAA chrIX:325496-326066 + 67 1.80e-11 TGGAGATCAT CGGTTCAAATCCGATTGGAAGCAATTTTTT TTCT chrXIII:372188-372745 - 22 2.04e-11 AGAACGTCCC CAGTTCGATCCTGGGCGAAATCATTTTTTT AGCACTTTAG chrXII:426884-427438 + 70 3.74e-11 TGCCAGATCG GGGTTCAATTCCCCGTCGCGGAGAATTTTT T chrV:438532-438996 + 37 3.74e-11 AGAACGTCCC CAGTTCGATCCTGGGCGAAATCAATTTTTT TTTTCGAAAA chrXIV:96017-96425 - 63 3.74e-11 GGGGACAC GGGTTCGATTCTCGTACCGCTCAAATTTTT TGATGGCATT chrXV:353670-354491 - 4 5.95e-11 TGGAGATCAT CGGTTCAAATCCGATTGGAAGCATTTTTTG TCG chrXVI:572017-572630 + 44 6.67e-11 GTTGGGCCCC CGGTTCGATTCCGGGCTTGCGCAATTTTTC CCCCTCGCCC chrVII:730972-731406 + 49 6.67e-11 GCAAGATCGT GAGTTCAACCCTCACTGGGGTCGTTTTTTG CTTGAAATGA chrXIII:572575-573221 - 28 6.67e-11 TGAAGGTCGA GAGTTCGAACCTCCCCTGGAGCACATTTTT TTTCAAAACT chrX:115812-115912 - 11 7.46e-11 GTGGAGACCG GGGTTCGACTCCCCGTATCGGAGTATTTTT TATGTGATTA chrXII:214674-215041 - 69 9.32e-11 AT CGGTTCGATTCCGGTTGCGTCCATTTATTT TTTACTTTTA chrVI:226493-226961 - 4 9.32e-11 ATAAGGTTAG GGGTTCGAGCCCCCTACAGGGCTTATCTCT TTT chrXII:167739-168229 - 3 1.04e-10 TTGCCCGCGC AGGTTCGAGTCCTGCAGTTGTCGTTATTTT TT chrII:227005-227337 + 13 1.04e-10 TTGCCCGCGC AGGTTCGAGTCCTGCAGTTGTCGTTATTTT TTGGACAGTA chrX:523607-523707 - 32 1.04e-10 TTGCCCGCGC AGGTTCGAGTCCTGCAGTTGTCGTTATTTT TTATTTCCCT chrVII:823368-823674 + 62 1.16e-10 AGAACGTCCC CAGTTCGATCCTGGGCGAAATCATTTTTTG AAGATTACA chrV:287875-289014 - 42 1.44e-10 CTGCCCGCGC TGGTTCAAATCCTGCTGGTGTCGTTTTTTT TATTGTTAGA chrXVI:810603-810905 + 23 1.97e-10 GCAAGATCGT GAGTTCAACCCTCACTGGGGTCGTAATTTT TACTAAATTA chrIV:802591-802823 - 67 1.97e-10 ACCC CGGTTCGAATCCGGGTAGGACCTCTTTTTA TTTTTACTCT chrXII:592361-592700 - 32 2.96e-10 TCGGATGCAA GGGTTCGAATCCCTTAGCTCTCATTATTTT TTGTTTTTTG chrXIV:104628-105163 + 10 5.33e-10 GGAGATCAT CGGTTCAAATCCGATTGGAAGCATATTATT TTTATTCTAC chrX:422716-422816 + 43 7.76e-10 TGAAGGTCGA GAGTTCGAACCTCCCCTGGAGCACATTTTC TTTTTTTGTG chrIV:437552-438098 + 56 9.33e-10 TTGCCCGCGC AGGTTCGAGTCCTGCAGTTGTCGTCATTTT TATATTCCCA chrXV:300808-301607 + 19 1.33e-09 GAGAGGCCCT GGGTTCAATTCCCAGCTCGCCCCCTTTTTT ACTATTGAAA chrXI:490774-491297 + 33 1.33e-09 AGAAGATTCC AGGTTCAAGTCCTGGCGGGGAAGAATTTTT TTACTTTTAT chrIII:90794-91064 + 71 1.46e-09 TAAGATGCAA GAGTTCGAATCTCTTAGCAACCATTATTTT chrVII:205112-206121 + 46 1.46e-09 TAAGATGCAA GAGTTCGAATCTCTTAGCAACCATTATTTT TTATCTTTTT chrVII:541746-542150 + 1 1.59e-09 . GGGTTCGACTCCCCGTATCGGAGTGTTCTT TTTCTTACCT chrX:374186-374286 - 16 2.06e-09 AGAAGATTAT GGGTTCGACCCCCATCGTGAGTGCTTTGTT TCTTCCGTGA chrVII:411966-412577 - 66 5.05e-09 GTCCC CAGTTCGATCCTGGGCGAAATCAAGTTTTA TTTTTTTCTG chrXI:379524-379921 + 59 5.05e-09 AGAACGTCCC CAGTTCGATCCTGGGCGAAATCAATTAATT TTTTTGGCTT chrXV:274513-275016 + 37 1.15e-08 TTACCTGCGC AGGTTCGAATCCTGTCTGTGACGCATTTCT TTTTTGTGAA chrV:311761-312283 - 44 1.68e-07 AAGAGGTCAT CGGTTCGATTCCGGTTGCGTCCAATGAAAT CTTTTTGTAC chrX:521760-521860 - 14 3.63e-07 GGCTTCGGCC CGGTTCCACCGCCCCCTGCCTCTTTTTCCG GTGACCGCTT chrXIII:195950-196278 - 62 9.56e-07 GTGGTCTAG TGGTATGATTCTCGCTTTGGGCGACTTCCT GATTAAACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGTTCGADYCCSSBHGDGRKCDWTTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:550932-551582 5e-13 70_[-1] chrV:135226-135610 5.9e-13 49_[-1]_21 chrIII:150970-151637 5.9e-13 23_[-1]_47 chrV:435663-435926 5.9e-13 [-1]_70 chrXVI:581827-582477 5.9e-13 9_[+1]_61 chrVII:122077-122655 4.8e-12 2_[+1]_68 chrII:405677-406367 9.5e-12 36_[+1]_34 chrIX:336098-336618 9.5e-12 33_[-1]_37 chrV:130820-131355 1.1e-11 37_[-1]_33 chrVI:137263-137786 1.1e-11 4_[-1]_66 chrVIII:134048-134774 1.4e-11 8_[+1]_62 chrIX:325496-326066 1.8e-11 66_[+1]_4 chrXIII:372188-372745 2e-11 21_[-1]_49 chrXII:426884-427438 3.7e-11 69_[+1]_1 chrV:438532-438996 3.7e-11 36_[+1]_34 chrXIV:96017-96425 3.7e-11 62_[-1]_8 chrXV:353670-354491 6e-11 3_[-1]_67 chrXVI:572017-572630 6.7e-11 43_[+1]_27 chrVII:730972-731406 6.7e-11 48_[+1]_22 chrXIII:572575-573221 6.7e-11 27_[-1]_43 chrX:115812-115912 7.5e-11 10_[-1]_60 chrXII:214674-215041 9.3e-11 68_[-1]_2 chrVI:226493-226961 9.3e-11 3_[-1]_67 chrXII:167739-168229 1e-10 2_[-1]_68 chrII:227005-227337 1e-10 12_[+1]_58 chrX:523607-523707 1e-10 31_[-1]_39 chrVII:823368-823674 1.2e-10 61_[+1]_9 chrV:287875-289014 1.4e-10 41_[-1]_29 chrXVI:810603-810905 2e-10 22_[+1]_48 chrIV:802591-802823 2e-10 66_[-1]_4 chrXII:592361-592700 3e-10 31_[-1]_39 chrXIV:104628-105163 5.3e-10 9_[+1]_61 chrX:422716-422816 7.8e-10 42_[+1]_28 chrIV:437552-438098 9.3e-10 55_[+1]_15 chrXV:300808-301607 1.3e-09 18_[+1]_52 chrXI:490774-491297 1.3e-09 32_[+1]_38 chrIII:90794-91064 1.5e-09 70_[+1] chrVII:205112-206121 1.5e-09 45_[+1]_25 chrVII:541746-542150 1.6e-09 [+1]_70 chrX:374186-374286 2.1e-09 15_[-1]_55 chrVII:411966-412577 5e-09 65_[-1]_5 chrXI:379524-379921 5e-09 58_[+1]_12 chrXV:274513-275016 1.2e-08 36_[+1]_34 chrV:311761-312283 1.7e-07 43_[-1]_27 chrX:521760-521860 3.6e-07 13_[-1]_57 chrXIII:195950-196278 9.6e-07 61_[-1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGTTCGADYCCSSBHGDGRKCDWTTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGGTTCGADYCCSSBHGDGRKCDWTTTTTT width=30 seqs=46 chrV:550932-551582 ( 71) CGGTTCGATCCCGCTAGAGACCAATTTTTT 1 chrV:135226-135610 ( 50) GGGTTCGAGCCCCCTACAGGGCTTTCTTTT 1 chrIII:150970-151637 ( 24) GGGTTCGAGCCCCCTACAGGGCTTTCTTTT 1 chrV:435663-435926 ( 1) GGGTTCGAGCCCCCTACAGGGCTTTCTTTT 1 chrXVI:581827-582477 ( 10) GGGTTCGAGCCCCCTACAGGGCTTTCTTTT 1 chrVII:122077-122655 ( 3) GGGTTCGAGCCCCCTACAGGGCTATTCTTT 1 chrII:405677-406367 ( 37) GGGTTCAATTCCCCGTCGCGGAGATTTTTT 1 chrIX:336098-336618 ( 34) GGGTTCAATTCCCCGTCGCGGAGATTTTTT 1 chrV:130820-131355 ( 38) CGGTTCGAATCCGGGTAAGACCTATTTTTT 1 chrVI:137263-137786 ( 5) GAGTTCAACCCTCACTGGGGTCGTTTTTTT 1 chrVIII:134048-134774 ( 9) CGGTTCGAATCCGGGTAGGACCTTTTTTTG 1 chrIX:325496-326066 ( 67) CGGTTCAAATCCGATTGGAAGCAATTTTTT 1 chrXIII:372188-372745 ( 22) CAGTTCGATCCTGGGCGAAATCATTTTTTT 1 chrXII:426884-427438 ( 70) GGGTTCAATTCCCCGTCGCGGAGAATTTTT 1 chrV:438532-438996 ( 37) CAGTTCGATCCTGGGCGAAATCAATTTTTT 1 chrXIV:96017-96425 ( 63) GGGTTCGATTCTCGTACCGCTCAAATTTTT 1 chrXV:353670-354491 ( 4) CGGTTCAAATCCGATTGGAAGCATTTTTTG 1 chrXVI:572017-572630 ( 44) CGGTTCGATTCCGGGCTTGCGCAATTTTTC 1 chrVII:730972-731406 ( 49) GAGTTCAACCCTCACTGGGGTCGTTTTTTG 1 chrXIII:572575-573221 ( 28) GAGTTCGAACCTCCCCTGGAGCACATTTTT 1 chrX:115812-115912 ( 11) GGGTTCGACTCCCCGTATCGGAGTATTTTT 1 chrXII:214674-215041 ( 69) CGGTTCGATTCCGGTTGCGTCCATTTATTT 1 chrVI:226493-226961 ( 4) GGGTTCGAGCCCCCTACAGGGCTTATCTCT 1 chrXII:167739-168229 ( 3) AGGTTCGAGTCCTGCAGTTGTCGTTATTTT 1 chrII:227005-227337 ( 13) AGGTTCGAGTCCTGCAGTTGTCGTTATTTT 1 chrX:523607-523707 ( 32) AGGTTCGAGTCCTGCAGTTGTCGTTATTTT 1 chrVII:823368-823674 ( 62) CAGTTCGATCCTGGGCGAAATCATTTTTTG 1 chrV:287875-289014 ( 42) TGGTTCAAATCCTGCTGGTGTCGTTTTTTT 1 chrXVI:810603-810905 ( 23) GAGTTCAACCCTCACTGGGGTCGTAATTTT 1 chrIV:802591-802823 ( 67) CGGTTCGAATCCGGGTAGGACCTCTTTTTA 1 chrXII:592361-592700 ( 32) GGGTTCGAATCCCTTAGCTCTCATTATTTT 1 chrXIV:104628-105163 ( 10) CGGTTCAAATCCGATTGGAAGCATATTATT 1 chrX:422716-422816 ( 43) GAGTTCGAACCTCCCCTGGAGCACATTTTC 1 chrIV:437552-438098 ( 56) AGGTTCGAGTCCTGCAGTTGTCGTCATTTT 1 chrXV:300808-301607 ( 19) GGGTTCAATTCCCAGCTCGCCCCCTTTTTT 1 chrXI:490774-491297 ( 33) AGGTTCAAGTCCTGGCGGGGAAGAATTTTT 1 chrIII:90794-91064 ( 71) GAGTTCGAATCTCTTAGCAACCATTATTTT 1 chrVII:205112-206121 ( 46) GAGTTCGAATCTCTTAGCAACCATTATTTT 1 chrVII:541746-542150 ( 1) GGGTTCGACTCCCCGTATCGGAGTGTTCTT 1 chrX:374186-374286 ( 16) GGGTTCGACCCCCATCGTGAGTGCTTTGTT 1 chrVII:411966-412577 ( 66) CAGTTCGATCCTGGGCGAAATCAAGTTTTA 1 chrXI:379524-379921 ( 59) CAGTTCGATCCTGGGCGAAATCAATTAATT 1 chrXV:274513-275016 ( 37) AGGTTCGAATCCTGTCTGTGACGCATTTCT 1 chrV:311761-312283 ( 44) CGGTTCGATTCCGGTTGCGTCCAATGAAAT 1 chrX:521760-521860 ( 14) CGGTTCCACCGCCCCCTGCCTCTTTTTCCG 1 chrXIII:195950-196278 ( 62) TGGTATGATTCTCGCTTTGGGCGACTTCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGTTCGADYCCSSBHGDGRKCDWTTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 7.62983 E= 1.3e-159 -127 90 136 -285 -27 -1217 199 -1217 -1217 -1217 243 -1217 -1217 -1217 -1217 167 -385 -1217 -1217 164 -1217 239 -1217 -385 -27 -310 195 -1217 167 -1217 -1217 -1217 -15 -29 36 5 -1217 115 -1217 90 -1217 239 -310 -1217 -1217 190 -1217 -4 -1217 149 81 -104 -85 81 122 -227 -1217 49 90 32 5 60 -1217 32 -153 22 149 -104 -15 -29 99 -68 -53 -51 143 -104 24 -78 136 -285 -285 7 115 15 -127 219 -1217 -385 32 -310 99 -53 5 -51 -1217 79 -53 -210 -210 115 -85 -110 -310 119 -227 -210 -1217 151 -227 -151 -310 143 -385 -110 -1217 151 -285 -210 -78 136 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGTTCGADYCCSSBHGDGRKCDWTTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 46 E= 1.3e-159 0.130435 0.347826 0.478261 0.043478 0.260870 0.000000 0.739130 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.021739 0.000000 0.000000 0.978261 0.000000 0.978261 0.000000 0.021739 0.260870 0.021739 0.717391 0.000000 1.000000 0.000000 0.000000 0.000000 0.282609 0.152174 0.239130 0.326087 0.000000 0.413043 0.000000 0.586957 0.000000 0.978261 0.021739 0.000000 0.000000 0.695652 0.000000 0.304348 0.000000 0.521739 0.326087 0.152174 0.173913 0.326087 0.434783 0.065217 0.000000 0.260870 0.347826 0.391304 0.326087 0.282609 0.000000 0.391304 0.108696 0.217391 0.521739 0.152174 0.282609 0.152174 0.369565 0.195652 0.217391 0.130435 0.500000 0.152174 0.369565 0.108696 0.478261 0.043478 0.043478 0.195652 0.413043 0.347826 0.130435 0.847826 0.000000 0.021739 0.391304 0.021739 0.369565 0.217391 0.326087 0.130435 0.000000 0.543478 0.217391 0.043478 0.043478 0.695652 0.173913 0.086957 0.021739 0.717391 0.065217 0.043478 0.000000 0.891304 0.065217 0.065217 0.021739 0.847826 0.021739 0.086957 0.000000 0.891304 0.043478 0.043478 0.108696 0.804348 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGTTCGADYCCSSBHGDGRKCDWTTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- [GC][GA]GTTC[GA]A[TAG][TC]C[CT][CG][GC][TGC][TAC][GC][GA][GA][GA][GT]C[AGT][TA][TA]TTTTT -------------------------------------------------------------------------------- Time 355.89 secs. ******************************************************************************** ******************************************************************************** MOTIF KGGCBMAKTKGKTARRGCGYCAGACTNWWR MEME-2 width = 30 sites = 43 llr = 832 E-value = 1.9e-130 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGGCBMAKTKGKTARRGCGYCAGACTNWWR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3:::362:1::1a53::1126:6::3547 pos.-specific C ::2a341:11:1:::2:a:361117:3:1: probability G 477:223525952:45a:9:1173:122:3 matrix T 6:1:4::373147:1::::5121139234: bits 2.4 ** 2.2 * ** 1.9 * * ** 1.7 * * * *** Relative 1.5 * * * *** Entropy 1.2 * * * *** * ** (27.9 bits) 1.0 **** * * *** * ** * 0.7 **** * * ********* * ** * 0.5 **** ************** * * ** * 0.2 ************************** *** 0.0 ------------------------------ Multilevel TGGCTCAGTGGGTAAGGCGTCAGACTAATA consensus GAC CAGT T TG GA C GT CTAG sequence G A GG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGCBMAKTKGKTARRGCGYCAGACTNWWR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIV:374743-375078 + 16 3.03e-13 TAAGCGGACT TAGCTCAGTTGGGAGAGCGCCAGACTGAAG AAAAACTTCG chrVIII:237750-238067 - 45 3.03e-13 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCCAGACTGAAG AAAAAACTTC chrIV:1095194-1095700 - 28 3.03e-13 TTAGCGGACT TAGCTCAGTTGGGAGAGCGCCAGACTGAAG AAAAAACTTT chrXV:353670-354491 - 47 3.03e-13 ACTGCTTCTA TGGCCAAGTTGGTAAGGCGCCACACTAGTA ATGTGGAGAT chrIX:174669-175428 + 40 3.03e-13 CGAGCTTCTA TGGCCAAGTTGGTAAGGCGCCACACTAGTA ATGTGGAGAT chrII:36254-36519 + 69 3.03e-13 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCCAGACTGAAG AA chrVIII:358289-358792 - 43 3.03e-13 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCCAGACTGAAG AAAAAACTTC chrIX:325496-326066 + 24 3.03e-13 CGAGCTTCTA TGGCCAAGTTGGTAAGGCGCCACACTAGTA ATGTGGAGAT chrXIII:352065-352605 + 2 3.03e-13 T TAGCTCAGTTGGGAGAGCGCCAGACTGAAG AAATACTTCG chrXVI:689289-689821 + 67 4.31e-13 TTGGGCACTA TGGCCGAGTGGTTAAGGCGACAGACTTGAA ATCT chrIX:248745-248928 + 71 4.31e-13 TTAGGCACTA TGGCCGAGTGGTTAAGGCGACAGACTTGAA chrIII:227724-228191 + 42 1.18e-12 AATGGCACTA TGGCCGAGTGGTTAAGGCGAGAGACTCGAA TGGAATAAAA chrXII:167739-168229 - 55 1.66e-11 TATGGCAACT TGGCCGAGTGGTTAAGGCGAAAGATTAGAA ATCTTTTGGG chrIV:437552-438098 + 4 1.66e-11 ACT TGGCCGAGTGGTTAAGGCGAAAGATTAGAA ATCTTTTGGG chrIII:150970-151637 - 67 3.60e-11 TTGT TGGCGCAATCGGTAGCGCGTATGACTCTTA ATCATAAGGT chrV:435663-435926 - 44 3.60e-11 AGAGCCTTGT TGGCGCAATCGGTAGCGCGTATGACTCTTA ATCATAAGGT chrXIII:480395-480942 - 39 3.60e-11 GTAGCCTTGT TGGCGCAATCGGTAGCGCGTATGACTCTTA ATCATAAGGT chrVI:226493-226961 - 47 3.60e-11 AATGCCTTGT TGGCGCAATCGGTAGCGCGTATGACTCTTA ATCATAAGGT chrVII:115271-115707 + 56 1.34e-10 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTTCGGCTTTTA AGCGCATTTG chrIV:359371-359780 + 59 1.34e-10 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTTCGGCTTTTA AGCGCATTTG chrIV:1175634-1176054 + 42 1.68e-10 AAAGCTTCAG TAGCTCAGTAGGAAGAGCGTCAGTCTCATA ATCTGAAGGT chrX:390937-391037 - 3 1.68e-10 AGTGCTTCAG TAGCTCAGTAGGAAGAGCGTCAGTCTCATA AT chrXIII:572575-573221 - 71 1.68e-10 . TAGCTCAGTAGGAAGAGCGTCAGTCTCATA ATCTGAAGGT chrVII:730972-731406 + 6 7.29e-10 TCCAT GGCCAAGTTGGTTAAGGCGTGCGACTGTTA ATCGCAAGAT chrVI:137263-137786 - 48 7.29e-10 CTGACTCCAT GGCCAAGTTGGTTAAGGCGTGCGACTGTTA ATCGCAAGAT chrXIV:602055-602549 + 68 8.04e-10 ATGGTCTCTT GGCCCAGTTGGTTAAGGCACCGTGCTAATA ACG chrXVI:819162-819914 + 49 8.04e-10 ATGGTCTCTT GGCCCAGTTGGTTAAGGCACCGTGCTAATA ACGCGGGGAT chrXII:605242-605591 - 30 2.45e-09 AATGCTCGTG TAGCTCAGTGGTTAGAGCTTCGTGCTTATA GCAACATTCG chrXII:962863-963252 - 11 4.11e-09 ACGGAGGGTT GGCCGAGTGGTCTAAGGCGGCAGACTTAAG ATCTGTTGGA chrXI:84036-84401 + 48 4.11e-09 ATGGAGGGTT GGCCGAGTGGTCTAAGGCGGCAGACTTAAG ATCTGTTGGA chrXII:732024-732250 + 11 4.86e-09 ATGGGAGTTT GGCCGAGTGGTTTAAGGCGTCAGATTTAGG TGGATTTAAC chrXIII:504663-505197 + 23 1.07e-08 GTGGTTGTTT GGCCGAGCGGTCTAAGGCGCCTGATTCAAG AAATATCTTG chrVII:774224-774521 + 34 4.09e-08 ATTGGGCGTG TGGCGTAGTCGGTAGCGCGCTCCCTTAGCA TGGGAGAGGT chrXIII:372188-372745 - 65 6.37e-08 TTTCGT GGTCTAGTCGGTTATGGCATCTGCTTAACA CGCAGAACGT chrVII:823368-823674 + 19 6.37e-08 GTGGTTTCGT GGTCTAGTCGGTTATGGCATCTGCTTAACA CGCAGAACGT chrXI:379524-379921 + 16 6.37e-08 TAGGTTTCGT GGTCTAGTCGGTTATGGCATCTGCTTAACA CGCAGAACGT chrVII:700273-701132 + 31 7.20e-08 TTGGTACTCT GGCCGAGTGGTCTAAGGCGTCAGGTCGAGG TCCTGATCTC chrIV:1150713-1151168 - 15 8.12e-08 TCAGTCCCAG TGGCCGAGTGGTTAAGGCGATGCCTGCTAT TTCCTCAGAA chrX:115812-115912 + 42 9.69e-08 GTCGAACCCC GGTCTCCACGGTGAAAGCGTGATGTGATAG CCGTTACACT chrIX:370269-370568 - 67 9.69e-08 CCCC GGTCTCCACGGTGAAAGCGTGATGTGATAG CCGTTACACT chrXVI:209988-210536 + 4 9.69e-08 CCC GGTCTCCACGGTGAAAGCGTGATGTGATAG CCGTTACACT chrIII:149734-150215 + 2 1.15e-07 C GTGGCGCAGTGGAAGCGCGCAGGGCTCATA ACCCTGATGT chrX:517681-517781 - 31 1.15e-07 GTTAAGCGCC GTGGCGCAGTGGAAGCGCGCAGGGCTCATA ACCCTGATGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGCBMAKTKGKTARRGCGYCAGACTNWWR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:374743-375078 3e-13 15_[+2]_55 chrVIII:237750-238067 3e-13 44_[-2]_26 chrIV:1095194-1095700 3e-13 27_[-2]_43 chrXV:353670-354491 3e-13 46_[-2]_24 chrIX:174669-175428 3e-13 39_[+2]_31 chrII:36254-36519 3e-13 68_[+2]_2 chrVIII:358289-358792 3e-13 42_[-2]_28 chrIX:325496-326066 3e-13 23_[+2]_47 chrXIII:352065-352605 3e-13 1_[+2]_69 chrXVI:689289-689821 4.3e-13 66_[+2]_4 chrIX:248745-248928 4.3e-13 70_[+2] chrIII:227724-228191 1.2e-12 41_[+2]_29 chrXII:167739-168229 1.7e-11 54_[-2]_16 chrIV:437552-438098 1.7e-11 3_[+2]_67 chrIII:150970-151637 3.6e-11 66_[-2]_4 chrV:435663-435926 3.6e-11 43_[-2]_27 chrXIII:480395-480942 3.6e-11 38_[-2]_32 chrVI:226493-226961 3.6e-11 46_[-2]_24 chrVII:115271-115707 1.3e-10 55_[+2]_15 chrIV:359371-359780 1.3e-10 58_[+2]_12 chrIV:1175634-1176054 1.7e-10 41_[+2]_29 chrX:390937-391037 1.7e-10 2_[-2]_68 chrXIII:572575-573221 1.7e-10 70_[-2] chrVII:730972-731406 7.3e-10 5_[+2]_65 chrVI:137263-137786 7.3e-10 47_[-2]_23 chrXIV:602055-602549 8e-10 67_[+2]_3 chrXVI:819162-819914 8e-10 48_[+2]_22 chrXII:605242-605591 2.5e-09 29_[-2]_41 chrXII:962863-963252 4.1e-09 10_[-2]_60 chrXI:84036-84401 4.1e-09 47_[+2]_23 chrXII:732024-732250 4.9e-09 10_[+2]_60 chrXIII:504663-505197 1.1e-08 22_[+2]_48 chrVII:774224-774521 4.1e-08 33_[+2]_37 chrXIII:372188-372745 6.4e-08 64_[-2]_6 chrVII:823368-823674 6.4e-08 18_[+2]_52 chrXI:379524-379921 6.4e-08 15_[+2]_55 chrVII:700273-701132 7.2e-08 30_[+2]_40 chrIV:1150713-1151168 8.1e-08 14_[-2]_56 chrX:115812-115912 9.7e-08 41_[+2]_29 chrIX:370269-370568 9.7e-08 66_[-2]_4 chrXVI:209988-210536 9.7e-08 3_[+2]_67 chrIII:149734-150215 1.2e-07 1_[+2]_69 chrX:517681-517781 1.2e-07 30_[-2]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGCBMAKTKGKTARRGCGYCAGACTNWWR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGGCBMAKTKGKTARRGCGYCAGACTNWWR width=30 seqs=43 chrXIV:374743-375078 ( 16) TAGCTCAGTTGGGAGAGCGCCAGACTGAAG 1 chrVIII:237750-238067 ( 45) TAGCTCAGTTGGGAGAGCGCCAGACTGAAG 1 chrIV:1095194-1095700 ( 28) TAGCTCAGTTGGGAGAGCGCCAGACTGAAG 1 chrXV:353670-354491 ( 47) TGGCCAAGTTGGTAAGGCGCCACACTAGTA 1 chrIX:174669-175428 ( 40) TGGCCAAGTTGGTAAGGCGCCACACTAGTA 1 chrII:36254-36519 ( 69) TAGCTCAGTTGGGAGAGCGCCAGACTGAAG 1 chrVIII:358289-358792 ( 43) TAGCTCAGTTGGGAGAGCGCCAGACTGAAG 1 chrIX:325496-326066 ( 24) TGGCCAAGTTGGTAAGGCGCCACACTAGTA 1 chrXIII:352065-352605 ( 2) TAGCTCAGTTGGGAGAGCGCCAGACTGAAG 1 chrXVI:689289-689821 ( 67) TGGCCGAGTGGTTAAGGCGACAGACTTGAA 1 chrIX:248745-248928 ( 71) TGGCCGAGTGGTTAAGGCGACAGACTTGAA 1 chrIII:227724-228191 ( 42) TGGCCGAGTGGTTAAGGCGAGAGACTCGAA 1 chrXII:167739-168229 ( 55) TGGCCGAGTGGTTAAGGCGAAAGATTAGAA 1 chrIV:437552-438098 ( 4) TGGCCGAGTGGTTAAGGCGAAAGATTAGAA 1 chrIII:150970-151637 ( 67) TGGCGCAATCGGTAGCGCGTATGACTCTTA 1 chrV:435663-435926 ( 44) TGGCGCAATCGGTAGCGCGTATGACTCTTA 1 chrXIII:480395-480942 ( 39) TGGCGCAATCGGTAGCGCGTATGACTCTTA 1 chrVI:226493-226961 ( 47) TGGCGCAATCGGTAGCGCGTATGACTCTTA 1 chrVII:115271-115707 ( 56) TAGCTCAGTTGGTAGAGCGTTCGGCTTTTA 1 chrIV:359371-359780 ( 59) TAGCTCAGTTGGTAGAGCGTTCGGCTTTTA 1 chrIV:1175634-1176054 ( 42) TAGCTCAGTAGGAAGAGCGTCAGTCTCATA 1 chrX:390937-391037 ( 3) TAGCTCAGTAGGAAGAGCGTCAGTCTCATA 1 chrXIII:572575-573221 ( 71) TAGCTCAGTAGGAAGAGCGTCAGTCTCATA 1 chrVII:730972-731406 ( 6) GGCCAAGTTGGTTAAGGCGTGCGACTGTTA 1 chrVI:137263-137786 ( 48) GGCCAAGTTGGTTAAGGCGTGCGACTGTTA 1 chrXIV:602055-602549 ( 68) GGCCCAGTTGGTTAAGGCACCGTGCTAATA 1 chrXVI:819162-819914 ( 49) GGCCCAGTTGGTTAAGGCACCGTGCTAATA 1 chrXII:605242-605591 ( 30) TAGCTCAGTGGTTAGAGCTTCGTGCTTATA 1 chrXII:962863-963252 ( 11) GGCCGAGTGGTCTAAGGCGGCAGACTTAAG 1 chrXI:84036-84401 ( 48) GGCCGAGTGGTCTAAGGCGGCAGACTTAAG 1 chrXII:732024-732250 ( 11) GGCCGAGTGGTTTAAGGCGTCAGATTTAGG 1 chrXIII:504663-505197 ( 23) GGCCGAGCGGTCTAAGGCGCCTGATTCAAG 1 chrVII:774224-774521 ( 34) TGGCGTAGTCGGTAGCGCGCTCCCTTAGCA 1 chrXIII:372188-372745 ( 65) GGTCTAGTCGGTTATGGCATCTGCTTAACA 1 chrVII:823368-823674 ( 19) GGTCTAGTCGGTTATGGCATCTGCTTAACA 1 chrXI:379524-379921 ( 16) GGTCTAGTCGGTTATGGCATCTGCTTAACA 1 chrVII:700273-701132 ( 31) GGCCGAGTGGTCTAAGGCGTCAGGTCGAGG 1 chrIV:1150713-1151168 ( 15) TGGCCGAGTGGTTAAGGCGATGCCTGCTAT 1 chrX:115812-115912 ( 42) GGTCTCCACGGTGAAAGCGTGATGTGATAG 1 chrIX:370269-370568 ( 67) GGTCTCCACGGTGAAAGCGTGATGTGATAG 1 chrXVI:209988-210536 ( 4) GGTCTCCACGGTGAAAGCGTGATGTGATAG 1 chrIII:149734-150215 ( 2) GTGGCGCAGTGGAAGCGCGCAGGGCTCATA 1 chrX:517681-517781 ( 31) GTGGCGCAGTGGAAGCGCGCAGGGCTCATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGCBMAKTKGKTARRGCGYCAGACTNWWR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 9.47447 E= 1.9e-130 -1207 -1207 109 95 -17 -1207 186 -275 -1207 17 181 -117 -1207 236 -200 -1207 -275 70 32 42 15 125 0 -375 95 -68 58 -1207 -58 -300 146 -30 -1207 -42 -19 115 -217 -68 146 -5 -1207 -1207 225 -143 -1207 -100 139 42 -143 -1207 17 110 167 -1207 -1207 -1207 64 -1207 125 -217 15 -19 139 -1207 -1207 -1207 243 -1207 -1207 243 -1207 -1207 -143 -1207 221 -375 -117 91 -200 57 -75 164 -42 -175 83 -68 -42 -75 -1207 -68 200 -117 83 -68 46 -217 -1207 191 -1207 -5 -1207 -300 -100 149 5 58 17 -75 70 -1207 17 -17 42 -100 -200 49 105 -1207 81 -375 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGCBMAKTKGKTARRGCGYCAGACTNWWR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 43 E= 1.9e-130 0.000000 0.000000 0.395349 0.604651 0.279070 0.000000 0.674419 0.046512 0.000000 0.209302 0.651163 0.139535 0.000000 0.953488 0.046512 0.000000 0.046512 0.302326 0.232558 0.418605 0.348837 0.441860 0.186047 0.023256 0.604651 0.116279 0.279070 0.000000 0.209302 0.023256 0.511628 0.255814 0.000000 0.139535 0.162791 0.697674 0.069767 0.116279 0.511628 0.302326 0.000000 0.000000 0.883721 0.116279 0.000000 0.093023 0.488372 0.418605 0.116279 0.000000 0.209302 0.674419 1.000000 0.000000 0.000000 0.000000 0.488372 0.000000 0.441860 0.069767 0.348837 0.162791 0.488372 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.116279 0.000000 0.860465 0.023256 0.139535 0.348837 0.046512 0.465116 0.186047 0.581395 0.139535 0.093023 0.558140 0.116279 0.139535 0.186047 0.000000 0.116279 0.744186 0.139535 0.558140 0.116279 0.255814 0.069767 0.000000 0.697674 0.000000 0.302326 0.000000 0.023256 0.093023 0.883721 0.325581 0.279070 0.209302 0.186047 0.511628 0.000000 0.209302 0.279070 0.418605 0.093023 0.046512 0.441860 0.651163 0.000000 0.325581 0.023256 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGCBMAKTKGKTARRGCGYCAGACTNWWR MEME-2 regular expression -------------------------------------------------------------------------------- [TG][GA][GC]C[TCG][CA][AG][GTA]T[GT]G[GT][TG]A[AG][GA]GCG[TC]CAG[AG][CT]T[ACG][ATG][TA][AG] -------------------------------------------------------------------------------- Time 677.10 secs. ******************************************************************************** ******************************************************************************** MOTIF SGATCKRRCACRSGACMWSCRSMYAWYYTG MEME-3 width = 30 sites = 10 llr = 328 E-value = 3.1e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGATCKRRCACRSGACMWSCRSMYAWYYTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a:::44:a:4::a:66::4:4:94:::: pos.-specific C 6:::a:::a:a:6::a4:4a:666::46:: probability G 4a:::466:::64a::::6:64::1::::a matrix T :::a:6:::::::::::4:::::4:664a: bits 2.4 * * * * * * * * 2.2 * * * * * * * * 1.9 * * * * * * * * 1.7 **** *** *** * ** Relative 1.5 ***** *** **** ** * ** Entropy 1.2 ***** ********** ******* *** (47.3 bits) 1.0 ***************** ******* **** 0.7 ****************************** 0.5 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel CGATCTGGCACGCGACAAGCGCCCATTCTG consensus G GAA AG CTC AGAT ACT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGATCKRRCACRSGACMWSCRSMYAWYYTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrII:405677-406367 - 7 1.56e-19 AATTGAACCC CGATCTGGCACGCGACAAGCGCCCATTCTG ACCATT chrXII:426884-427438 - 40 1.56e-19 AATTGAACCC CGATCTGGCACGCGACAAGCGCCCATTCTG ACCATTAAAC chrXI:513297-513483 + 15 1.56e-19 AATTGAACCC CGATCTGGCACGCGACAAGCGCCCATTCTG ACCATTAAAC chrIX:336098-336618 + 64 1.56e-19 AATTGAACCC CGATCTGGCACGCGACAAGCGCCCATTCTG ACCATTA chrXV:571579-572357 - 59 1.56e-19 AATTGAACCC CGATCTGGCACGCGACAAGCGCCCATTCTG ACCATTAAAC chrX:204443-204543 - 60 1.56e-19 AATTGAACCC CGATCTGGCACGCGACAAGCGCCCATTCTG ACCATTAAAC chrVIII:237750-238067 + 2 1.60e-14 T GGATCGAACACAGGACCTCCAGATAACTTG ACCGAAGTTT chrXVI:559942-560443 + 68 1.60e-14 CGAATTCTGT GGATCGAACACAGGACCTCCAGATAACTTG ACC chrXIII:352065-352605 - 44 1.60e-14 CGAATTCTGT GGATCGAACACAGGACCTCCAGATAACTTG ACCGAAGTAT chrXIV:374743-375078 - 58 2.93e-14 CGAACTCTGT GGATCGAACACAGGACCTCCAGATGACTTG ACCGAAGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGATCKRRCACRSGACMWSCRSMYAWYYTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:405677-406367 1.6e-19 6_[-3]_64 chrXII:426884-427438 1.6e-19 39_[-3]_31 chrXI:513297-513483 1.6e-19 14_[+3]_56 chrIX:336098-336618 1.6e-19 63_[+3]_7 chrXV:571579-572357 1.6e-19 58_[-3]_12 chrX:204443-204543 1.6e-19 59_[-3]_11 chrVIII:237750-238067 1.6e-14 1_[+3]_69 chrXVI:559942-560443 1.6e-14 67_[+3]_3 chrXIII:352065-352605 1.6e-14 43_[-3]_27 chrXIV:374743-375078 2.9e-14 57_[-3]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGATCKRRCACRSGACMWSCRSMYAWYYTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGATCKRRCACRSGACMWSCRSMYAWYYTG width=30 seqs=10 chrII:405677-406367 ( 7) CGATCTGGCACGCGACAAGCGCCCATTCTG 1 chrXII:426884-427438 ( 40) CGATCTGGCACGCGACAAGCGCCCATTCTG 1 chrXI:513297-513483 ( 15) CGATCTGGCACGCGACAAGCGCCCATTCTG 1 chrIX:336098-336618 ( 64) CGATCTGGCACGCGACAAGCGCCCATTCTG 1 chrXV:571579-572357 ( 59) CGATCTGGCACGCGACAAGCGCCCATTCTG 1 chrX:204443-204543 ( 60) CGATCTGGCACGCGACAAGCGCCCATTCTG 1 chrVIII:237750-238067 ( 2) GGATCGAACACAGGACCTCCAGATAACTTG 1 chrXVI:559942-560443 ( 68) GGATCGAACACAGGACCTCCAGATAACTTG 1 chrXIII:352065-352605 ( 44) GGATCGAACACAGGACCTCCAGATAACTTG 1 chrXIV:374743-375078 ( 58) GGATCGAACACAGGACCTCCAGATGACTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGATCKRRCACRSGACMWSCRSMYAWYYTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.591 E= 3.1e-046 -997 169 110 -997 -997 -997 242 -997 167 -997 -997 -997 -997 -997 -997 167 -997 242 -997 -997 -997 -997 110 93 35 -997 169 -997 35 -997 169 -997 -997 242 -997 -997 167 -997 -997 -997 -997 242 -997 -997 35 -997 169 -997 -997 169 110 -997 -997 -997 242 -997 167 -997 -997 -997 -997 242 -997 -997 93 110 -997 -997 93 -997 -997 35 -997 110 169 -997 -997 242 -997 -997 35 -997 169 -997 -997 169 110 -997 35 169 -997 -997 -997 169 -997 35 152 -997 -89 -997 35 -997 -997 93 -997 110 -997 93 -997 169 -997 35 -997 -997 -997 167 -997 -997 242 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGATCKRRCACRSGACMWSCRSMYAWYYTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 10 E= 3.1e-046 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.600000 0.400000 0.000000 0.600000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.600000 0.000000 0.000000 0.400000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.600000 0.400000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.900000 0.000000 0.100000 0.000000 0.400000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.600000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGATCKRRCACRSGACMWSCRSMYAWYYTG MEME-3 regular expression -------------------------------------------------------------------------------- [CG]GATC[TG][GA][GA]CAC[GA][CG]GAC[AC][AT][GC]C[GA][CG][CA][CT]A[TA][TC][CT]TG -------------------------------------------------------------------------------- Time 999.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:333305-334221 8.03e-01 100 chrVIII:100741-101474 9.64e-01 100 chrXV:87432-88276 3.13e-01 100 chrVI:226493-226961 7.90e-15 3_[-1(9.32e-11)]_13_[-2(3.60e-11)]_\ 24 chrXI:112793-114679 2.63e-01 100 chrI:150807-151135 7.85e-01 100 chrIV:1233338-1234334 3.24e-01 100 chrXVI:821644-822090 6.54e-01 100 chrXIII:630699-635127 2.71e-01 100 chrVII:422895-423578 8.72e-01 100 chrVII:310691-312701 3.80e-02 25_[-1(7.12e-05)]_45 chrXI:258681-258926 4.94e-02 100 chrIV:592505-592815 1.18e-01 100 chrIII:142049-143282 9.64e-01 100 chrXVI:529639-533371 7.28e-01 100 chrIV:974111-974775 4.97e-01 100 chrXI:411962-413268 5.68e-01 100 chrIX:255048-257114 8.59e-02 100 chrXIV:568064-568435 6.74e-01 100 chrIV:884296-884563 3.39e-02 2_[+2(6.98e-05)]_68 chrXII:265685-266631 3.92e-01 100 chrIX:248745-248928 7.53e-09 70_[+2(4.31e-13)] chrII:306922-307357 3.74e-01 100 chrXI:312019-313582 2.12e-01 100 chrXVI:303043-305011 5.47e-01 100 chrVII:319038-320128 8.49e-03 33_[-3(4.43e-05)]_37 chrXV:805241-806668 9.35e-01 100 chrXI:579871-580167 4.45e-01 100 chrVII:784202-785310 6.08e-01 100 chrXV:867123-868022 8.28e-02 100 chrXIII:161738-164340 5.26e-01 100 chrV:99756-100263 8.31e-01 100 chrXVI:627245-627492 6.96e-01 100 chrII:591196-591791 9.14e-01 100 chrIV:757466-758436 8.55e-02 8_[+2(7.18e-05)]_62 chrXV:778168-779410 2.89e-01 100 chrII:234428-235992 8.94e-01 100 chrXIII:753003-754263 6.82e-01 100 chrVI:210424-210921 1.20e-02 100 chrXII:665118-665429 4.64e-02 67_[+1(6.15e-05)]_3 chrVIII:132561-133338 1.00e+00 100 chrX:422716-422816 2.19e-09 42_[+1(7.76e-10)]_28 chrVII:255181-255733 2.08e-01 100 chrVIII:361988-362726 2.09e-02 100 chrXII:809712-815767 6.23e-01 100 chrXIII:352065-352605 7.29e-22 1_[+2(3.03e-13)]_12_[-3(1.60e-14)]_\ 27 chrXIV:215700-217130 9.93e-01 100 chrXIV:661130-661796 2.92e-01 100 chrVII:363882-364435 8.40e-01 100 chrXVI:775666-776044 9.16e-02 100 chrXIII:123085-124150 9.16e-01 100 chrIV:1417129-1417517 5.97e-01 100 chrXV:710094-710526 9.92e-01 100 chrXIII:300842-302550 8.45e-01 100 chrVII:828250-828983 2.66e-01 100 chrXI:490774-491297 4.48e-06 32_[+1(1.33e-09)]_38 chrX:374186-374286 1.71e-06 15_[-1(2.06e-09)]_55 chrVI:180634-181876 7.86e-01 100 chrXVI:412389-413860 6.15e-01 100 chrVI:43352-44444 3.27e-01 100 chrII:45598-46614 6.36e-01 100 chrXII:796980-797255 2.34e-01 100 chrII:326334-327190 7.26e-01 100 chrX:651898-651998 2.92e-01 100 chrV:223222-224979 9.27e-02 37_[+3(9.15e-05)]_33 chrIV:1016935-1017669 4.95e-01 100 chrVII:149242-150599 6.58e-02 100 chrXIII:480395-480942 1.97e-07 38_[-2(3.60e-11)]_32 chrXIV:96017-96425 2.78e-07 62_[-1(3.74e-11)]_8 chrIII:107079-107815 9.89e-01 100 chrXII:451448-451646 9.74e-01 100 chrVII:930306-931131 4.32e-01 100 chrXI:84036-84401 4.17e-05 47_[+2(4.11e-09)]_23 chrII:87935-88602 5.30e-01 100 chrXII:1017426-1018955 8.40e-02 67_[-2(8.02e-05)]_3 chrIII:162086-163325 9.85e-02 100 chrV:282923-284295 1.35e-01 100 chrXII:368505-370255 9.06e-01 100 chrIV:1162590-1164746 5.47e-01 100 chrXII:151062-151891 7.51e-01 100 chrVII:205112-206121 2.21e-05 45_[+1(1.46e-09)]_25 chrXVI:578460-581174 1.46e-01 100 chrIII:167965-168519 9.43e-01 100 chrIII:78376-78875 1.01e-01 100 chrVII:786754-788024 1.04e-01 100 chrXII:366056-366547 1.14e-01 100 chrII:165184-165429 2.00e-02 1_[-2(9.71e-05)]_69 chrXII:898110-899713 7.34e-01 100 chrXV:1073447-1073861 2.80e-01 100 chrVIII:34412-36138 5.79e-01 100 chrVII:23873-26158 2.39e-01 100 chrX:745132-745232 3.11e-01 100 chrXVI:172973-174132 8.93e-01 100 chrVII:798522-800229 9.15e-02 100 chrXV:281827-283490 2.25e-01 100 chrVII:736208-737171 3.08e-01 100 chrXVI:406597-407788 3.55e-01 100 chrXII:498816-500099 9.17e-01 100 chrXVI:819162-819914 6.82e-06 48_[+2(8.04e-10)]_22 chrVIII:381475-382763 6.99e-01 100 chrV:441893-442672 8.72e-02 100 chrXI:617251-618760 8.40e-01 100 chrXVI:654098-655270 9.28e-01 100 chrIV:117625-118234 3.32e-01 100 chrII:236501-237370 9.00e-01 100 chrIII:102032-102930 9.26e-01 100 chrVIII:62124-63191 9.20e-01 100 chrXVI:911407-912229 9.50e-01 100 chrXIII:131499-132078 3.69e-01 100 chrXV:226603-226853 9.98e-01 100 chrXIII:259085-259436 8.64e-01 100 chrIX:183320-183854 7.40e-01 100 chrV:469248-470519 3.26e-01 100 chrVII:1035-2284 1.20e-01 100 chrV:78063-80057 6.39e-01 100 chrIV:802591-802823 8.59e-07 66_[-1(1.97e-10)]_4 chrXV:663344-664879 9.62e-01 100 chrXII:962863-963252 3.54e-06 10_[-2(4.11e-09)]_60 chrIX:127849-129862 1.06e-02 100 chrXV:594331-594643 3.87e-01 100 chrVII:774224-774521 8.25e-05 33_[+2(4.09e-08)]_37 chrXIII:702160-703331 9.07e-02 100 chrVIII:162763-163472 7.85e-01 100 chrXVI:878870-880543 4.75e-02 100 chrV:362692-363295 7.14e-01 100 chrVII:555739-557566 7.80e-01 100 chrXVI:136355-136806 1.25e-01 100 chrXIII:808071-808513 2.73e-01 100 chrXV:899795-901242 1.69e-01 100 chrX:521760-521860 1.85e-05 13_[-1(3.63e-07)]_57 chrVII:703337-706626 2.98e-01 100 chrX:414825-414925 9.05e-01 100 chrXII:605242-605591 1.25e-05 29_[-2(2.45e-09)]_41 chrXII:214674-215041 1.66e-06 68_[-1(9.32e-11)]_2 chrXVI:794954-796124 6.46e-01 100 chrXIII:747712-748508 2.11e-01 100 chrXIV:546530-547469 5.01e-01 100 chrIV:1310777-1312074 2.54e-01 100 chrVII:609360-610012 1.38e-01 100 chrXI:431841-433017 7.87e-01 100 chrXI:307961-308649 4.26e-01 100 chrV:287450-287612 5.61e-02 100 chrXI:518905-521082 1.11e-01 100 chrXV:796999-798879 7.49e-02 100 chrX:420770-420870 1.20e-01 100 chrXIII:731404-733281 5.09e-01 100 chrVII:545201-546057 6.95e-01 100 chrX:538531-538631 2.96e-01 100 chrXI:100242-106904 3.10e-01 100 chrIV:488484-488957 8.76e-01 100 chrXIV:88898-89959 7.32e-01 100 chrVII:998006-998696 5.17e-01 100 chrXIII:586412-587091 7.09e-01 100 chrXIII:146441-147254 4.79e-01 100 chrII:680376-681927 4.56e-01 100 chrV:298852-302113 5.29e-01 100 chrVII:661545-661882 9.89e-01 100 chrX:155987-156087 2.89e-01 100 chrXVI:537442-537985 3.02e-01 100 chrXII:459633-460754 3.04e-01 100 chrI:65772-67895 3.00e-01 100 chrXIII:463456-463854 1.76e-01 100 chrVI:157921-158510 1.90e-01 100 chrIII:90794-91064 2.21e-05 70_[+1(1.46e-09)] chrII:350636-350949 6.34e-01 100 chrXII:374216-374774 9.95e-01 100 chrXIII:91420-92090 2.87e-01 100 chrVIII:145274-146748 7.58e-01 100 chrX:523607-523707 9.18e-08 31_[-1(1.04e-10)]_39 chrXV:252830-253664 4.49e-01 100 chrX:348754-348854 5.90e-01 100 chrXV:287155-287385 8.44e-01 100 chrXI:379524-379921 1.01e-10 15_[+2(6.37e-08)]_13_[+1(5.05e-09)]_\ 12 chrXIV:229598-230802 3.45e-01 100 chrVIII:134048-134774 1.78e-07 8_[+1(1.40e-11)]_62 chrXIV:627807-629129 1.32e-01 100 chrII:604391-605794 6.43e-01 100 chrXIV:575067-576269 9.37e-01 100 chrX:396390-396490 9.41e-01 100 chrVI:167278-167755 5.32e-03 36_[+1(8.97e-05)]_34 chrXII:975804-976096 9.08e-01 100 chrXVI:842338-842585 5.47e-01 100 chrII:81534-83928 8.44e-01 100 chrIV:1075341-1075756 2.07e-01 100 chrI:151331-151975 1.14e-01 100 chrIV:1363921-1364498 3.16e-01 100 chrXI:109299-110460 7.58e-01 100 chrIX:386691-386877 4.64e-01 100 chrV:85214-86776 5.86e-01 100 chrXII:627686-628984 7.28e-01 100 chrXII:515335-516871 6.60e-01 100 chrVII:938899-939645 2.69e-01 100 chrXII:837657-839411 8.83e-02 100 chrXII:64341-66040 8.65e-01 100 chrII:266227-266741 9.92e-01 100 chrVIII:126482-127900 1.14e-01 100 chrXV:113445-113871 9.95e-01 100 chrX:540651-540751 3.02e-01 100 chrIV:992710-993211 4.44e-01 100 chrV:207421-208310 1.56e-01 100 chrIV:809664-810372 1.15e-01 100 chrXIV:61517-62928 3.71e-01 100 chrXIII:296925-298913 4.71e-01 100 chrXIV:619482-620099 4.02e-01 100 chrVII:648759-649332 4.93e-01 100 chrIV:229879-230741 8.64e-01 100 chrVI:137263-137786 4.11e-15 4_[-1(1.08e-11)]_13_[-2(7.29e-10)]_\ 23 chrX:384183-384283 8.01e-01 100 chrVII:597569-598797 2.34e-02 100 chrXIV:631533-631985 4.23e-01 100 chrXVI:581827-582477 4.74e-11 9_[+1(5.94e-13)]_12_[-2(6.79e-05)]_\ 19 chrV:101812-102954 6.40e-01 100 chrXVI:559942-560443 9.43e-12 67_[+3(1.60e-14)]_3 chrIX:325496-326066 3.13e-18 23_[+2(3.03e-13)]_13_[+1(1.80e-11)]_\ 4 chrXV:438391-439506 6.55e-01 100 chrXII:1028809-1030261 8.93e-01 100 chrV:435663-435926 1.34e-16 [-1(5.94e-13)]_13_[-2(3.60e-11)]_27 chrXVI:435116-436238 3.25e-01 100 chrV:396749-397959 8.34e-02 67_[+3(7.63e-05)]_3 chrXV:407526-408225 3.61e-01 100 chrXIII:748691-748902 9.49e-01 100 chrV:151225-152717 9.75e-01 100 chrXVI:689289-689821 6.42e-09 66_[+2(4.31e-13)]_4 chrXVI:194124-194627 4.93e-01 100 chrX:384600-384700 8.49e-01 100 chrXIV:24150-26535 4.46e-01 100 chrVII:110372-110760 7.92e-01 100 chrXII:793769-796381 2.04e-01 100 chrIX:316727-318295 2.22e-01 100 chrIX:98199-99462 8.00e-01 100 chrIV:1305331-1306412 6.27e-02 100 chrIV:465186-470835 6.47e-01 100 chrVII:700273-701132 6.97e-07 30_[+2(7.20e-08)]_3_[-1(4.84e-05)]_\ 7 chrII:347436-347917 1.27e-04 37_[+1(9.77e-06)]_33 chrXII:282770-283860 2.21e-02 100 chrIII:150970-151637 5.44e-17 23_[-1(5.94e-13)]_13_[-2(3.60e-11)]_\ 4 chrIX:300031-300781 9.56e-01 100 chrIV:1441451-1443002 9.20e-01 100 chrXIII:587273-587442 8.53e-01 100 chrV:16397-17772 6.24e-01 100 chrIV:181259-181798 5.26e-01 100 chrXI:591545-592303 3.21e-02 3_[-2(6.98e-05)]_67 chrX:517681-517781 3.06e-07 30_[-2(1.15e-07)]_40 chrII:301119-301604 6.88e-01 100 chrXV:619285-621295 9.52e-02 100 chrVII:398502-400163 5.72e-01 100 chrII:420431-420747 8.50e-01 100 chrVIII:358289-358792 5.71e-09 42_[-2(3.03e-13)]_28 chrIII:123508-123762 6.72e-03 3_[+3(6.94e-05)]_67 chrX:612363-612463 6.40e-01 100 chrIV:1329091-1329985 9.81e-01 100 chrIII:190747-192339 9.88e-01 100 chrXII:546155-547561 3.88e-01 100 chrXIII:195950-196278 4.89e-04 61_[-1(9.56e-07)]_9 chrV:510567-512298 1.56e-01 100 chrX:59018-59118 8.23e-01 100 chrXVI:744106-744503 1.98e-02 100 chrV:550932-551582 1.68e-11 70_[-1(5.05e-13)] chrII:197143-197796 1.75e-01 100 chrXIII:288068-289690 6.70e-01 100 chrXV:651046-651722 1.07e-01 27_[+1(3.90e-05)]_43 chrV:138500-140741 1.66e-01 100 chrXVI:209988-210536 7.92e-04 3_[+2(9.69e-08)]_67 chrXVI:282069-283276 2.50e-01 100 chrXIII:290627-291233 5.26e-01 100 chrVII:806028-807766 3.36e-02 100 chrV:423524-424411 1.67e-01 100 chrXIII:754552-755464 8.98e-01 100 chrXIV:626063-627105 6.30e-01 100 chrXVI:700441-700707 9.38e-01 100 chrIV:601220-602338 2.23e-01 100 chrXII:875257-875884 8.23e-01 100 chrXIII:551482-551692 2.79e-01 100 chrVII:438995-440090 9.41e-01 100 chrXVI:338758-339366 9.99e-01 100 chrIV:540619-541921 6.87e-01 100 chrI:24978-25467 9.91e-01 100 chrXIV:104628-105163 4.60e-06 9_[+1(5.33e-10)]_61 chrXIII:557461-557949 2.92e-01 100 chrXI:578773-579629 2.11e-01 100 chrXIV:480721-481279 7.71e-01 100 chrXV:159285-160140 3.93e-02 100 chrIII:229106-230894 6.41e-01 100 chrVII:277475-278755 3.60e-01 100 chrXII:732024-732250 1.73e-06 10_[+2(4.86e-09)]_60 chrIV:1031954-1032118 8.29e-01 100 chrX:265292-265392 9.09e-01 100 chrXI:302658-303210 3.26e-02 100 chrVII:823368-823674 2.92e-12 18_[+2(6.37e-08)]_13_[+1(1.16e-10)]_\ 9 chrV:249788-250706 6.67e-01 100 chrVIII:374899-375091 6.15e-01 100 chrV:433288-434198 3.73e-01 100 chrXI:158617-159893 9.48e-01 100 chrVII:466020-466945 2.17e-01 100 chrII:413340-415274 1.82e-01 100 chrIV:626362-628395 1.62e-01 100 chrIII:471-1264 1.97e-01 100 chrXV:815366-815946 8.50e-01 100 chrXV:677617-678891 8.36e-01 100 chrXV:274513-275016 2.31e-05 36_[+1(1.15e-08)]_34 chrIX:316212-316487 5.96e-01 100 chrXI:334087-334989 2.15e-01 100 chrVII:519386-521201 2.03e-01 100 chrX:355215-355315 8.94e-01 100 chrXII:784188-784461 7.09e-02 100 chrXI:257861-258296 6.24e-02 21_[-2(4.29e-05)]_49 chrXII:522678-523603 6.24e-01 100 chrXI:140830-143070 3.58e-01 100 chrI:166192-166809 8.00e-01 100 chrX:647394-647494 4.18e-02 53_[-3(7.99e-05)]_17 chrXIII:511350-512046 1.73e-01 100 chrVII:875966-877955 8.22e-01 100 chrXVI:377848-378452 4.10e-01 100 chrVII:122077-122655 1.79e-08 2_[+1(4.83e-12)]_68 chrXIV:721168-723201 2.67e-01 100 chrIV:1466524-1467140 8.55e-01 100 chrXII:92429-92647 7.09e-01 100 chrXI:778-1095 7.20e-01 100 chrVII:738756-739316 2.65e-02 40_[-2(2.18e-05)]_30 chrII:227634-231471 8.46e-01 100 chrXIII:498780-500770 1.78e-01 100 chrII:36254-36519 6.34e-09 68_[+2(3.03e-13)]_2 chrXII:201635-202680 6.02e-01 100 chrIII:73823-74866 3.69e-01 100 chrXVI:425788-425972 7.73e-01 100 chrIX:388870-390961 2.51e-02 100 chrXI:364583-365266 3.57e-01 100 chrXVI:121948-125076 5.91e-01 100 chrXV:380702-381050 8.46e-01 100 chrXIV:656302-660390 7.78e-01 100 chrIX:174669-175428 3.18e-10 39_[+2(3.03e-13)]_31 chrXIV:493690-495043 2.42e-01 100 chrVIII:147632-148734 8.61e-01 100 chrX:617700-617800 9.34e-01 100 chrXV:779866-780956 2.14e-01 100 chrV:135226-135610 1.46e-09 49_[-1(5.94e-13)]_21 chrXIII:892875-895203 7.92e-01 100 chrXV:1027626-1029530 1.19e-01 100 chrII:237909-238109 3.11e-01 100 chrXV:60380-60669 3.13e-01 100 chrII:477165-477775 3.12e-01 100 chrIV:1150713-1151168 6.53e-06 14_[-2(8.12e-08)]_56 chrXIII:886997-889572 8.22e-01 100 chrXIII:572575-573221 1.03e-16 27_[-1(6.67e-11)]_13_[-2(1.68e-10)] chrXII:656859-657222 3.39e-01 100 chrXV:622105-622353 9.64e-01 100 chrXVI:718245-719493 4.53e-02 61_[-3(5.52e-05)]_9 chrVII:846903-848198 7.29e-01 100 chrVII:824219-827331 4.46e-01 100 chrV:363665-364648 5.93e-01 100 chrIV:913973-914858 3.29e-01 100 chrVI:162044-162375 7.98e-01 100 chrX:204443-204543 6.16e-16 59_[-3(1.56e-19)]_11 chrX:390937-391037 8.18e-07 2_[-2(1.68e-10)]_68 chrXV:832284-832844 6.03e-01 100 chrIV:1487641-1490350 3.60e-01 100 chrXV:571579-572357 6.16e-16 58_[-3(1.56e-19)]_12 chrXI:208132-208310 4.05e-01 100 chrXVI:768537-769456 6.99e-01 100 chrVIII:451243-453052 4.44e-01 100 chrIX:336098-336618 1.86e-23 33_[-1(9.48e-12)]_[+3(1.56e-19)]_7 chrX:354188-354288 8.43e-01 100 chrXV:540317-543914 2.41e-01 100 chrVII:316761-317416 7.68e-01 100 chrXII:734597-734919 6.30e-01 100 chrXIII:372188-372745 5.68e-13 21_[-1(2.04e-11)]_13_[-2(6.37e-08)]_\ 6 chrIV:570920-572804 7.60e-01 100 chrXVI:404793-406029 1.31e-01 100 chrIV:359371-359780 1.35e-06 58_[+2(1.34e-10)]_12 chrIV:1352340-1355606 9.40e-01 100 chrVII:328377-329806 4.82e-01 100 chrIV:1151850-1153424 4.09e-01 100 chrXI:325915-327568 5.76e-01 100 chrX:396050-396150 5.56e-01 100 chrXIII:320946-321642 4.25e-01 100 chrV:176907-177509 3.04e-01 100 chrIV:322188-323591 4.12e-02 46_[+3(6.18e-05)]_24 chrIX:395820-397116 1.39e-01 100 chrXI:513297-513483 6.16e-16 14_[+3(1.56e-19)]_56 chrXII:198370-199705 4.54e-01 100 chrXIII:378900-379593 2.39e-01 100 chrVI:19291-19595 6.45e-01 100 chrVIII:555747-556340 7.77e-01 100 chrXI:558281-559479 6.08e-01 100 chrIV:1157481-1158501 1.19e-01 100 chrIV:1201481-1201967 8.86e-01 100 chrVII:544408-544929 7.56e-01 100 chrVII:726947-728662 7.92e-01 100 chrXIII:362961-364413 9.24e-01 100 chrXI:208558-210043 4.65e-01 100 chrIV:416295-417528 9.11e-01 100 chrXIII:650536-652929 5.73e-01 100 chrXI:458471-459352 7.74e-01 100 chrXVI:810603-810905 2.23e-07 22_[+1(1.97e-10)]_48 chrIV:234315-234498 1.62e-01 100 chrIV:765075-765490 6.78e-02 100 chrV:311761-312283 1.28e-04 43_[-1(1.68e-07)]_27 chrX:531453-531553 1.36e-01 100 chrX:73550-73650 7.02e-03 100 chrXIII:504663-505197 5.87e-05 22_[+2(1.07e-08)]_48 chrXIV:505989-507626 1.56e-01 100 chrVII:596097-596289 1.06e-01 100 chrXV:842378-842916 9.35e-01 100 chrVII:914761-915275 8.94e-01 100 chrXIV:499602-500765 9.34e-02 100 chrXV:353670-354491 9.84e-18 3_[-1(5.95e-11)]_13_[-2(3.03e-13)]_\ 24 chrIV:1443705-1444200 1.78e-01 100 chrIX:197160-198033 2.04e-02 63_[-2(6.06e-06)]_7 chrXV:92699-94471 2.98e-02 58_[-2(1.80e-05)]_12 chrV:438532-438996 3.14e-08 36_[+1(3.74e-11)]_34 chrVIII:212114-212378 8.86e-01 100 chrIII:295373-295954 9.43e-01 100 chrXII:780416-781832 1.02e-01 21_[+1(6.52e-05)]_49 chrXII:166407-167404 6.37e-01 100 chrIV:720578-721609 9.86e-02 100 chrVII:771753-773634 8.02e-01 100 chrXII:592361-592700 9.95e-07 31_[-1(2.96e-10)]_39 chrXIV:715457-716649 9.84e-01 100 chrII:481511-483082 9.71e-01 100 chrVII:844355-845987 6.44e-01 100 chrIV:1175634-1176054 1.75e-10 41_[+2(1.68e-10)]_29 chrIV:1200893-1201128 7.51e-01 100 chrVI:64017-64957 9.18e-01 100 chrXV:444608-446202 8.97e-01 100 chrXI:282814-284828 1.41e-02 100 chrVII:730972-731406 2.32e-14 5_[+2(7.29e-10)]_13_[+1(6.67e-11)]_\ 22 chrV:130820-131355 5.02e-08 37_[-1(1.08e-11)]_33 chrIX:336874-337044 9.53e-01 100 chrVI:191129-191727 9.73e-01 100 chrXIII:554808-556696 9.53e-01 100 chrX:442455-442555 5.64e-01 100 chrXIV:282059-283715 2.29e-01 100 chrIV:220586-222172 3.18e-01 100 chrVII:857094-857581 8.68e-01 100 chrXIV:302646-303926 7.82e-03 27_[-3(2.40e-05)]_43 chrIV:846820-847608 5.15e-01 100 chrIV:45246-46148 1.25e-01 100 chrXIV:576655-577452 4.31e-01 100 chrV:378526-379492 7.86e-02 100 chrXVI:858989-860628 5.33e-01 100 chrVII:184192-185791 5.54e-01 100 chrV:306261-306931 1.36e-01 100 chrXV:505701-506930 5.71e-01 100 chrXV:854017-854874 3.11e-02 100 chrIV:118445-118824 9.20e-01 100 chrIV:1095194-1095700 1.09e-08 27_[-2(3.03e-13)]_43 chrV:322044-323088 2.60e-01 100 chrXIII:837700-838200 4.09e-01 100 chrV:67075-68883 1.05e-01 100 chrXII:426884-427438 4.42e-23 39_[-3(1.56e-19)]_[+1(3.74e-11)]_1 chrIII:227724-228191 2.13e-08 41_[+2(1.18e-12)]_29 chrVII:287246-287944 6.08e-01 100 chrIII:13997-16919 7.53e-01 100 chrXI:162451-162776 9.89e-01 100 chrIV:170640-171527 9.86e-01 100 chrIV:945809-946648 7.18e-01 100 chrXV:976393-978348 2.62e-02 49_[+1(4.69e-05)]_21 chrV:61066-62128 9.23e-01 100 chrII:227005-227337 1.07e-07 12_[+1(1.04e-10)]_58 chrXII:625185-625976 7.24e-01 100 chrVII:541746-542150 1.80e-05 [+1(1.59e-09)]_70 chrX:542776-542876 8.38e-01 100 chrII:168359-169708 4.64e-01 100 chrXII:449682-450604 4.08e-01 100 chrVIII:410937-411746 1.00e+00 100 chrVIII:383055-383240 8.18e-01 100 chrXIII:222566-223876 1.41e-01 100 chrXII:930585-931797 7.52e-01 100 chrIII:308611-308988 2.37e-01 100 chrVIII:491919-493703 4.58e-01 100 chrX:663669-663769 5.20e-01 100 chrII:256170-257694 4.48e-01 100 chrXIII:551924-553554 1.80e-01 100 chrXIV:392084-392889 6.22e-02 52_[+3(9.52e-05)]_18 chrV:266314-268131 3.04e-01 100 chrXIV:602055-602549 1.48e-06 67_[+2(8.04e-10)]_3 chrVII:479042-482922 4.93e-01 100 chrVII:147965-149006 3.95e-01 100 chrX:435630-435730 3.67e-01 100 chrX:609262-609362 1.87e-01 100 chrXVI:731605-731849 3.24e-01 100 chrXII:710849-712814 5.56e-02 100 chrVIII:504229-504590 1.00e+00 100 chrXII:448500-448984 2.85e-01 100 chrXV:300808-301607 2.13e-06 18_[+1(1.33e-09)]_52 chrXVI:829857-830595 1.13e-01 100 chrVII:648043-648485 7.06e-01 100 chrIV:437552-438098 9.66e-15 3_[+2(1.66e-11)]_22_[+1(9.33e-10)]_\ 15 chrIV:892036-892688 3.52e-01 100 chrIV:619650-620872 3.57e-01 100 chrVIII:388675-389196 1.38e-04 [-1(4.19e-07)]_35_[-1(9.56e-07)]_5 chrVI:101430-101856 7.67e-01 100 chrXIV:403111-404887 3.49e-01 100 chrII:405677-406367 1.81e-23 6_[-3(1.56e-19)]_[+1(9.48e-12)]_34 chrIX:370269-370568 9.43e-04 66_[-2(9.69e-08)]_4 chrII:444715-445742 8.95e-01 100 chrIII:120273-121733 5.86e-01 100 chrV:141111-141332 4.46e-02 100 chrIV:331112-332937 9.60e-01 100 chrXVI:649099-650022 5.35e-01 100 chrXVI:730835-731315 3.36e-01 100 chrVII:610438-610995 8.53e-01 100 chrVIII:237750-238067 2.80e-20 1_[+3(1.60e-14)]_13_[-2(3.03e-13)]_\ 26 chrV:424606-425463 6.15e-02 26_[+1(2.35e-05)]_44 chrXIV:442886-444247 2.88e-01 100 chrXV:228005-228520 8.83e-01 100 chrXIII:626147-626982 6.27e-01 100 chrVII:411966-412577 7.64e-06 65_[-1(5.05e-09)]_5 chrIV:579335-581307 9.69e-01 100 chrIV:491472-492652 4.05e-02 100 chrXIII:420345-420773 2.08e-01 100 chrIX:323992-324934 1.54e-01 100 chrIII:178492-178796 3.45e-01 100 chrVIII:554199-554763 5.59e-01 100 chrIV:434027-435133 8.73e-01 100 chrXII:88158-88497 9.86e-01 100 chrXVI:572017-572630 1.56e-07 43_[+1(6.67e-11)]_27 chrXIV:585422-586630 9.98e-01 100 chrV:287875-289014 1.32e-08 41_[-1(1.44e-10)]_29 chrII:478961-479609 9.88e-01 100 chrXIV:725641-726324 9.32e-01 100 chrXVI:813130-813613 5.25e-01 100 chrIV:504328-505181 9.26e-01 100 chrXVI:351997-352560 9.32e-01 100 chrXV:606863-608330 7.07e-01 100 chrIV:1301569-1302630 3.90e-01 100 chrXII:636681-640004 4.11e-01 100 chrI:71692-73688 3.83e-01 100 chrIX:96793-97451 8.96e-01 100 chrVIII:375256-377073 4.26e-01 100 chrXV:622564-623336 8.57e-01 100 chrXVI:432482-434531 8.35e-01 100 chrIV:1461354-1461816 6.07e-01 100 chrVII:115271-115707 7.89e-07 55_[+2(1.34e-10)]_15 chrXV:110079-111089 1.96e-01 100 chrX:424353-424453 2.82e-01 100 chrXV:487500-487739 3.99e-02 16_[-2(3.59e-05)]_54 chrXIV:374743-375078 6.66e-20 15_[+2(3.03e-13)]_12_[-3(2.93e-14)]_\ 13 chrXV:827890-830621 5.31e-01 100 chrVII:364868-366675 7.99e-01 100 chrXVI:371015-372959 6.25e-01 100 chrXIV:63264-64527 5.98e-02 100 chrVIII:104482-105524 2.51e-02 28_[+2(1.53e-05)]_42 chrXI:163273-164462 2.45e-01 100 chrVII:899584-901052 3.20e-01 100 chrXII:573211-573461 8.36e-01 100 chrIV:209968-210613 6.31e-01 100 chrIV:1236389-1238891 7.51e-01 100 chrVII:76969-78278 1.70e-01 100 chrXIII:425127-425925 9.56e-01 100 chrXII:348063-348722 8.69e-01 100 chrII:6790-7088 9.51e-01 100 chrXIV:253207-254162 2.32e-01 100 chrXIII:19015-20497 4.48e-01 100 chrIII:149734-150215 1.87e-06 1_[+2(1.15e-07)]_13_[+1(6.33e-05)]_\ 26 chrIV:555444-556620 5.57e-01 100 chrVI:222714-223810 9.27e-02 100 chrXVI:451767-453275 6.79e-02 100 chrVII:533262-535099 1.20e-01 100 chrXV:287641-288356 1.65e-01 100 chrIV:929246-930391 8.78e-01 100 chrXI:430554-431291 4.70e-01 100 chrXVI:74988-76300 2.33e-01 100 chrVII:1048660-1050077 9.48e-01 100 chrXIII:701697-701908 7.05e-01 100 chrXV:32923-33918 6.88e-01 100 chrXV:877722-878077 3.17e-01 100 chrV:117479-118177 8.91e-01 100 chrIV:1360114-1361121 2.77e-01 100 chrX:172738-172838 6.49e-01 100 chrXI:46725-47004 8.06e-01 100 chrX:90673-90773 5.43e-01 100 chrV:431052-431914 3.88e-01 100 chrXII:855753-857717 3.65e-01 100 chrIV:129006-130825 2.16e-01 100 chrIV:519677-520503 8.22e-01 100 chrVII:345860-346705 3.15e-01 100 chrV:6488-6803 2.87e-01 100 chrXV:723210-724651 5.18e-01 100 chrIV:568732-569504 2.83e-01 100 chrX:122172-122272 3.17e-01 100 chrIV:1205439-1206298 1.27e-01 100 chrIV:1402161-1403461 9.72e-01 100 chrVII:971825-974017 4.76e-01 100 chrXI:517784-518052 8.27e-01 100 chrIV:526994-527538 9.11e-01 100 chrXVI:692821-694646 5.22e-01 100 chrX:115812-115912 3.74e-11 10_[-1(7.46e-11)]_1_[+2(9.69e-08)]_\ 29 chrVII:781857-783983 7.91e-01 100 chrXII:167739-168229 1.20e-15 2_[-1(1.04e-10)]_22_[-2(1.66e-11)]_\ 16 chrVII:611169-611494 7.58e-01 100 chrV:486320-487585 3.08e-01 100 chrV:269112-269863 9.42e-01 100 chrXVI:55903-56331 3.80e-01 100 chrVII:440689-441330 9.85e-01 100 chrXII:242218-243527 4.94e-01 100 chrX:196216-196316 5.62e-01 100 chrII:254593-255832 7.58e-01 100 chrXV:160417-160735 9.85e-01 100 chrX:608331-608431 8.80e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************