******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YAP1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:392941-394754 1.0000 100 chrVIII:212107-212380 1.0000 100 chrXV:93071-94453 1.0000 100 chrVII:287247-287849 1.0000 100 chrXI:307956-308548 1.0000 100 chrII:36265-36526 1.0000 100 chrIV:1449807-1450873 1.0000 100 chrXVI:810601-811080 1.0000 100 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1.0000 100 chrXI:46729-47005 1.0000 100 chrV:77978-79457 1.0000 100 chrXIII:572659-573109 1.0000 100 chrV:438481-438997 1.0000 100 chrII:591533-591790 1.0000 100 chrIX:111362-111946 1.0000 100 chrII:466671-466876 1.0000 100 chrIV:541198-541907 1.0000 100 chrIX:25947-26326 1.0000 100 chrX:355223-355323 1.0000 100 chrXII:374221-374686 1.0000 100 chrX:172754-172854 1.0000 100 chrXV:854165-854763 1.0000 100 chrXIII:306508-307127 1.0000 100 chrXII:949074-950283 1.0000 100 chrV:354823-355628 1.0000 100 chrVII:440678-441118 1.0000 100 chrX:422696-422796 1.0000 100 chrIX:386681-386921 1.0000 100 chrIII:137758-139011 1.0000 100 chrIV:1305396-1305763 1.0000 100 chrXII:837703-839410 1.0000 100 chrX:348823-348923 1.0000 100 chrVI:101399-101722 1.0000 100 chrII:236507-237369 1.0000 100 chrVIII:75368-76278 1.0000 100 chrXIV:560094-560770 1.0000 100 chrIII:513-1139 1.0000 100 chrIX:324167-324522 1.0000 100 chrXIV:480637-481268 1.0000 100 chrIII:123507-123757 1.0000 100 chrXV:622107-622348 1.0000 100 chrVI:167286-167723 1.0000 100 chrXVI:55841-56330 1.0000 100 chrV:51816-53258 1.0000 100 chrXVI:559895-560445 1.0000 100 chrXIV:739307-739679 1.0000 100 chrIV:189136-190293 1.0000 100 chrXV:380303-381209 1.0000 100 chrIV:1150714-1151165 1.0000 100 chrV:207403-207912 1.0000 100 chrXII:65329-65762 1.0000 100 chrXII:809760-815746 1.0000 100 chrXVI:502914-503116 1.0000 100 chrXII:568069-568831 1.0000 100 chrX:212205-212305 1.0000 100 chrIV:1360029-1361276 1.0000 100 chrXIII:146636-148075 1.0000 100 chrIX:118359-121583 1.0000 100 chrXIV:575213-576261 1.0000 100 chrXI:518799-521064 1.0000 100 chrIX:325547-326071 1.0000 100 chrVII:823370-823667 1.0000 100 chrVII:363675-364434 1.0000 100 chrV:117544-118173 1.0000 100 chrVII:592100-592733 1.0000 100 chrIV:802617-802823 1.0000 100 chrVII:738842-739335 1.0000 100 chrIV:914003-914859 1.0000 100 chrXIII:378819-379656 1.0000 100 chrXIII:90950-92096 1.0000 100 chrXIV:104653-105227 1.0000 100 chrXIV:505894-507606 1.0000 100 chrXV:254294-254719 1.0000 100 chrII:477181-477774 1.0000 100 chrXV:677629-678806 1.0000 100 chrVII:516327-518993 1.0000 100 chrVIII:451278-453077 1.0000 100 chrV:287922-288828 1.0000 100 chrXIV:251077-251311 1.0000 100 chrXII:86890-87257 1.0000 100 chrXI:513293-513490 1.0000 100 chrXI:162451-162649 1.0000 100 chrIV:437557-438068 1.0000 100 chrIV:1016953-1017500 1.0000 100 chrII:165189-165481 1.0000 100 chrXVI:434855-436199 1.0000 100 chrXIV:413555-414968 1.0000 100 chrI:203223-203464 1.0000 100 chrVII:364891-366037 1.0000 100 chrIV:1461313-1461817 1.0000 100 chrXVI:425779-425973 1.0000 100 chrII:237692-238091 1.0000 100 chrVII:609356-610099 1.0000 100 chrX:120294-120394 1.0000 100 chrXIV:253201-254136 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YAP1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YAP1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.306 C 0.194 G 0.194 T 0.306 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--YAP1/background): A 0.310 C 0.190 G 0.190 T 0.310 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAWYGMYSMCDVBGGGRDTCGAACC MEME-1 width = 30 sites = 58 llr = 1062 E-value = 7.9e-176 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAWYGMYSMCDVBGGGRDTCGAACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 88888785113123233:13:53:::aa:: pos.-specific C ::::::1:4144544:4431::1:8:::a7 probability G 111111:2:72122252367a43::a:::1 matrix T 1111222352131212:3:::12a2::::2 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 * * ** * Relative 1.4 * ****** Entropy 1.2 * ****** (26.4 bits) 1.0 ** *** ******* 0.7 ***** * * **** ******* 0.5 ******* ** * ******* ******* 0.2 ********************** ******* 0.0 ------------------------------ Multilevel AAAAAAAATGCCCCCGCCGGGAATCGAACC consensus TC ATGAAAAGCA GG T T sequence GTGT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGMYSMCDVBGGGRDTCGAACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrVII:828455-828952 + 62 1.53e-12 TTTTTATTGC AAAAAAAGCACTCACGATGGGGGTCGAACC CATAATCTT chrIX:197179-198087 - 59 1.79e-12 AAAAAGAATA AAAAATAACTCCGAAGCGGGGAGTCGAACC CCGGTCTCCA chrIV:1016953-1017500 + 23 3.33e-12 TAGAAAATAA AAAAGAAACTCCGAAGCGGGGAGTCGAACC CCGGTCTCCA chrIX:324167-324522 + 1 4.49e-12 . AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrXIII:463460-463826 - 11 4.49e-12 CTGGTCTGAT AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrX:204516-204616 - 51 4.49e-12 TCAAGGGCCA AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrXIII:290605-291074 - 62 1.87e-11 TTTCTTCAA AAAGAAAACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrXVI:210028-210420 + 10 1.87e-11 AGGAAGCAA AAAGAAAACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrXII:214722-215035 + 47 2.15e-11 ATAAAAGTAA AAAATAAATGGACGCAACCGGAATCGAACC GATGACCTCT chrXVI:880071-880528 + 39 2.15e-11 AAAGAAAGAA AAAAGAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrXVI:581824-582492 - 5 2.46e-11 CCATGCAATA AAAAAGAAAGCCCTGTAGGGGGCTCGAACC CCTA chrV:135218-135605 + 56 2.46e-11 ATTTTCGGAG AAAAAGAAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrXII:374221-374686 - 3 2.81e-11 TTGTCGGAGC AAAAAAATCTTCCCCGCCAGGACTTGAACC TG chrXV:340111-340570 + 1 2.81e-11 . AAAAAAATCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrXIII:572659-573109 + 41 4.76e-11 AAGTTTTGAA AAAAAATGTGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrX:374194-374294 + 24 6.15e-11 ATCACGGAAG AAACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrXIII:131604-132086 + 22 6.15e-11 AAAAAAGAAG AAACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrIX:325547-326071 - 40 8.97e-11 CTTTCAAAGA AAAAAAATTGCTTCCAATCGGATTTGAACC GATGATCTCC chrV:438481-438997 - 63 1.02e-10 TTTCGAAA AAAAAAATTGATTTCGCCCAGGATCGAACT GGGGACGTTC chrII:227001-227340 - 15 1.15e-10 TTACTGTCCA AAAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrV:130858-131374 + 8 1.15e-10 GCGGGGG AAAAAAATAGGTCTTACCCGGATTCGAACC GGGGTTGTTC chrV:176907-177460 - 16 1.30e-10 GTAGCCATCA AAAAAGTACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrVI:137237-137746 + 37 1.46e-10 TGATTTTGAA TAAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrXIV:96055-96397 + 57 2.09e-10 CAATGCCATC AAAAAATTTGAGCGGTACGAGAATCGAACC CGTGTCCCCA chrXI:74537-74779 - 68 2.65e-10 TTA AAAATAAGCGACCCCAGTGAGGGTTGAACT CACGATCTTG chrVII:541741-542131 - 14 2.97e-10 GAGGTAAGAA AAAGAACACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrXIII:372213-372741 + 10 4.18e-10 CTAAAGTGC TAAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrIV:802617-802823 + 53 5.23e-10 TAGAGTAAAA ATAAAAAGAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrXIII:747695-748119 + 27 5.23e-10 AAAAAAAATA CTAAAAAACACTCACGATGGGGGTCGAACC CATAATCTTC chrX:422696-422796 - 71 7.27e-10 . AGAAAATGTGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrVII:700429-701132 - 5 1.00e-09 GTAGATTCAA AAAAATATTGATACCCGCGGGGTTTGAACC CGCG chrX:197166-197266 + 26 1.69e-09 TTGAGAACAA AAAGAAATTGGACGAGTCCGGAATCGAACC GGAGACCTCT chrXII:592366-592693 + 32 1.69e-09 GCAAAAAACA AAAAATAATGAGAGCTAAGGGATTCGAACC CTTGCATCCG chrIV:83356-83800 - 69 2.07e-09 AA ATTAAACTTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrX:415690-415790 + 4 2.29e-09 AAA AAATAAATTGAAACGGACAGGAATTGAACC TGCAACCCTT chrVI:226442-226887 + 66 2.80e-09 TAGAGAAAAA AAGAGATAAGCCCTGTAGGGGGCTCGAACC CCTAA chrVI:167286-167723 - 50 3.09e-09 GCAAGATTTA AAAAAATATCTCCCGGGGGCGAGTCGAACG CCCGATCTCA chrVI:210423-210887 + 6 3.09e-09 TCAGA AAAAAATATCTCCCGGGGGCGAGTCGAACG CCCGATCTCA chrXIII:168781-169000 - 22 3.09e-09 AAAAAGGGAA AAAAAATATCTCCCGGGGGCGAGTCGAACG CCCGATCTCA chrXV:274511-275011 - 41 3.09e-09 ATTCACAAAA AAGAAATGCGTCACAGACAGGATTCGAACC TGCGCAGGTA chrIV:437557-438068 - 70 3.75e-09 T AAAAATGACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrVII:730973-731393 - 56 4.14e-09 CTCATTTCAA GCAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrXI:379508-379918 - 69 4.14e-09 AA AAATTAATTGATTTCGCCCAGGATCGAACT GGGGACGTTC chrXIII:420352-420774 + 67 4.14e-09 TAACGGCTGA GATAAAAATGATTTCGCCCAGGATCGAACT GGGG chrXIII:195950-196268 + 1 4.14e-09 . CAAAAAAAGGGGCGAGCTGGGAATTGAACC CAGGGCCTCT chrVII:823370-823667 - 66 6.64e-09 AATCT TCAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrVII:878326-879073 + 53 7.28e-09 AAAAATTAAA TAATAAAATGAAACGGACAGGAATTGAACC TGCAACCCTT chrVII:205184-206126 - 8 1.78e-08 CAAAAAGATA AAAAATAATGGTTGCTAAGAGATTCGAACT CTTGCAT chrVIII:475502-475879 + 58 4.42e-08 AAAAAATCGA TGTTAAAATGTTCCAACCGAGGATCGAACT CGGGACCTTT chrXVI:622296-622814 + 27 7.64e-08 GCAGGTCGAA AAAATAAATGCGAATTCTGTGGATCGAACA CAGGACCTCC chrIII:149740-150191 - 55 1.29e-07 ACAGTTCAAA AAATTTAATAGCGCCGCTCGGTTTCGATCC GAGGACATCA chrV:311745-312286 + 50 1.48e-07 GGTACAAAAA GATTTCATTGGACGCAACCGGAATCGAACC GATGACCTCT chrIV:519677-519894 - 70 2.77e-07 A TAAGTTATTGAAGGATGCGAGGTTCGAACT CGCGCGGACA chrXVI:559895-560445 + 70 3.39e-07 AAAATACAAA AATAGAAATGCGAATTCTGTGGATCGAACA C chrII:347441-347986 - 2 3.86e-07 ATATTAAAAA AATATTACTGAAGGATGCGAGGTTCGAACT C chrXV:723113-724613 + 21 4.12e-07 TAGATGAAGC TGATAGAATGTTGGATATGGGTTTCGAACC TCAAATTAGA chrX:517697-517797 + 30 1.46e-06 AAATATAAAA ATTAAGCTTAGCGCCGCTCGGTTTCGATCC GAGGACATCA chrIII:177081-178200 - 51 2.79e-06 CGTTCACGTT AAGATCAGAGCTACCGGTGGTACTAGAACC AAGACTCCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGMYSMCDVBGGGRDTCGAACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:828455-828952 1.5e-12 61_[+1]_9 chrIX:197179-198087 1.8e-12 58_[-1]_12 chrIV:1016953-1017500 3.3e-12 22_[+1]_48 chrIX:324167-324522 4.5e-12 [+1]_70 chrXIII:463460-463826 4.5e-12 10_[-1]_60 chrX:204516-204616 4.5e-12 50_[-1]_20 chrXIII:290605-291074 1.9e-11 61_[-1]_9 chrXVI:210028-210420 1.9e-11 9_[+1]_61 chrXII:214722-215035 2.1e-11 46_[+1]_24 chrXVI:880071-880528 2.1e-11 38_[+1]_32 chrXVI:581824-582492 2.5e-11 4_[-1]_66 chrV:135218-135605 2.5e-11 55_[+1]_15 chrXII:374221-374686 2.8e-11 2_[-1]_68 chrXV:340111-340570 2.8e-11 [+1]_70 chrXIII:572659-573109 4.8e-11 40_[+1]_30 chrX:374194-374294 6.1e-11 23_[+1]_47 chrXIII:131604-132086 6.1e-11 21_[+1]_49 chrIX:325547-326071 9e-11 39_[-1]_31 chrV:438481-438997 1e-10 62_[-1]_8 chrII:227001-227340 1.1e-10 14_[-1]_56 chrV:130858-131374 1.1e-10 7_[+1]_63 chrV:176907-177460 1.3e-10 15_[-1]_55 chrVI:137237-137746 1.5e-10 36_[+1]_34 chrXIV:96055-96397 2.1e-10 56_[+1]_14 chrXI:74537-74779 2.6e-10 67_[-1]_3 chrVII:541741-542131 3e-10 13_[-1]_57 chrXIII:372213-372741 4.2e-10 9_[+1]_61 chrIV:802617-802823 5.2e-10 52_[+1]_18 chrXIII:747695-748119 5.2e-10 26_[+1]_44 chrX:422696-422796 7.3e-10 70_[-1] chrVII:700429-701132 1e-09 4_[-1]_66 chrX:197166-197266 1.7e-09 25_[+1]_45 chrXII:592366-592693 1.7e-09 31_[+1]_39 chrIV:83356-83800 2.1e-09 68_[-1]_2 chrX:415690-415790 2.3e-09 3_[+1]_67 chrVI:226442-226887 2.8e-09 65_[+1]_5 chrVI:167286-167723 3.1e-09 49_[-1]_21 chrVI:210423-210887 3.1e-09 5_[+1]_65 chrXIII:168781-169000 3.1e-09 21_[-1]_49 chrXV:274511-275011 3.1e-09 40_[-1]_30 chrIV:437557-438068 3.8e-09 69_[-1]_1 chrVII:730973-731393 4.1e-09 55_[-1]_15 chrXI:379508-379918 4.1e-09 68_[-1]_2 chrXIII:420352-420774 4.1e-09 66_[+1]_4 chrXIII:195950-196268 4.1e-09 [+1]_70 chrVII:823370-823667 6.6e-09 65_[-1]_5 chrVII:878326-879073 7.3e-09 52_[+1]_18 chrVII:205184-206126 1.8e-08 7_[-1]_63 chrVIII:475502-475879 4.4e-08 57_[+1]_13 chrXVI:622296-622814 7.6e-08 26_[+1]_44 chrIII:149740-150191 1.3e-07 54_[-1]_16 chrV:311745-312286 1.5e-07 49_[+1]_21 chrIV:519677-519894 2.8e-07 69_[-1]_1 chrXVI:559895-560445 3.4e-07 69_[+1]_1 chrII:347441-347986 3.9e-07 1_[-1]_69 chrXV:723113-724613 4.1e-07 20_[+1]_50 chrX:517697-517797 1.5e-06 29_[+1]_41 chrIII:177081-178200 2.8e-06 50_[-1]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGMYSMCDVBGGGRDTCGAACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAWYGMYSMCDVBGGGRDTCGAACC width=30 seqs=58 chrVII:828455-828952 ( 62) AAAAAAAGCACTCACGATGGGGGTCGAACC 1 chrIX:197179-198087 ( 59) AAAAATAACTCCGAAGCGGGGAGTCGAACC 1 chrIV:1016953-1017500 ( 23) AAAAGAAACTCCGAAGCGGGGAGTCGAACC 1 chrIX:324167-324522 ( 1) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrXIII:463460-463826 ( 11) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrX:204516-204616 ( 51) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrXIII:290605-291074 ( 62) AAAGAAAACTCCGATACGGGGAGTCGAACC 1 chrXVI:210028-210420 ( 10) AAAGAAAACTCCGATACGGGGAGTCGAACC 1 chrXII:214722-215035 ( 47) AAAATAAATGGACGCAACCGGAATCGAACC 1 chrXVI:880071-880528 ( 39) AAAAGAAATGGTCTCTAGCGGGATCGAACC 1 chrXVI:581824-582492 ( 5) AAAAAGAAAGCCCTGTAGGGGGCTCGAACC 1 chrV:135218-135605 ( 56) AAAAAGAAAGCCCTGTAGGGGGCTCGAACC 1 chrXII:374221-374686 ( 3) AAAAAAATCTTCCCCGCCAGGACTTGAACC 1 chrXV:340111-340570 ( 1) AAAAAAATCTTCCCCGCCAGGACTTGAACC 1 chrXIII:572659-573109 ( 41) AAAAAATGTGCTCCAGGGGAGGTTCGAACT 1 chrX:374194-374294 ( 24) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrXIII:131604-132086 ( 22) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrIX:325547-326071 ( 40) AAAAAAATTGCTTCCAATCGGATTTGAACC 1 chrV:438481-438997 ( 63) AAAAAAATTGATTTCGCCCAGGATCGAACT 1 chrII:227001-227340 ( 15) AAAAATAACGACAACTGCAGGACTCGAACC 1 chrV:130858-131374 ( 8) AAAAAAATAGGTCTTACCCGGATTCGAACC 1 chrV:176907-177460 ( 16) AAAAAGTACTCCGATACGGGGAGTCGAACC 1 chrVI:137237-137746 ( 37) TAAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrXIV:96055-96397 ( 57) AAAAAATTTGAGCGGTACGAGAATCGAACC 1 chrXI:74537-74779 ( 68) AAAATAAGCGACCCCAGTGAGGGTTGAACT 1 chrVII:541741-542131 ( 14) AAAGAACACTCCGATACGGGGAGTCGAACC 1 chrXIII:372213-372741 ( 10) TAAAAAAATGATTTCGCCCAGGATCGAACT 1 chrIV:802617-802823 ( 53) ATAAAAAGAGGTCCTACCCGGATTCGAACC 1 chrXIII:747695-748119 ( 27) CTAAAAAACACTCACGATGGGGGTCGAACC 1 chrX:422696-422796 ( 71) AGAAAATGTGCTCCAGGGGAGGTTCGAACT 1 chrVII:700429-701132 ( 5) AAAAATATTGATACCCGCGGGGTTTGAACC 1 chrX:197166-197266 ( 26) AAAGAAATTGGACGAGTCCGGAATCGAACC 1 chrXII:592366-592693 ( 32) AAAAATAATGAGAGCTAAGGGATTCGAACC 1 chrIV:83356-83800 ( 69) ATTAAACTTGCGCAAGCCCGGAATCGAACC 1 chrX:415690-415790 ( 4) AAATAAATTGAAACGGACAGGAATTGAACC 1 chrVI:226442-226887 ( 66) AAGAGATAAGCCCTGTAGGGGGCTCGAACC 1 chrVI:167286-167723 ( 50) AAAAAATATCTCCCGGGGGCGAGTCGAACG 1 chrVI:210423-210887 ( 6) AAAAAATATCTCCCGGGGGCGAGTCGAACG 1 chrXIII:168781-169000 ( 22) AAAAAATATCTCCCGGGGGCGAGTCGAACG 1 chrXV:274511-275011 ( 41) AAGAAATGCGTCACAGACAGGATTCGAACC 1 chrIV:437557-438068 ( 70) AAAAATGACGACAACTGCAGGACTCGAACC 1 chrVII:730973-731393 ( 56) GCAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrXI:379508-379918 ( 69) AAATTAATTGATTTCGCCCAGGATCGAACT 1 chrXIII:420352-420774 ( 67) GATAAAAATGATTTCGCCCAGGATCGAACT 1 chrXIII:195950-196268 ( 1) CAAAAAAAGGGGCGAGCTGGGAATTGAACC 1 chrVII:823370-823667 ( 66) TCAAAAAATGATTTCGCCCAGGATCGAACT 1 chrVII:878326-879073 ( 53) TAATAAAATGAAACGGACAGGAATTGAACC 1 chrVII:205184-206126 ( 8) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrVIII:475502-475879 ( 58) TGTTAAAATGTTCCAACCGAGGATCGAACT 1 chrXVI:622296-622814 ( 27) AAAATAAATGCGAATTCTGTGGATCGAACA 1 chrIII:149740-150191 ( 55) AAATTTAATAGCGCCGCTCGGTTTCGATCC 1 chrV:311745-312286 ( 50) GATTTCATTGGACGCAACCGGAATCGAACC 1 chrIV:519677-519894 ( 70) TAAGTTATTGAAGGATGCGAGGTTCGAACT 1 chrXVI:559895-560445 ( 70) AATAGAAATGCGAATTCTGTGGATCGAACA 1 chrII:347441-347986 ( 2) AATATTACTGAAGGATGCGAGGTTCGAACT 1 chrXV:723113-724613 ( 21) TGATAGAATGTTGGATATGGGTTTCGAACC 1 chrX:517697-517797 ( 30) ATTAAGCTTAGCGCCGCTCGGTTTCGATCC 1 chrIII:177081-178200 ( 51) AAGATCAGAGCTACCGGTGGTACTAGAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGMYSMCDVBGGGRDTCGAACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 7.61366 E= 7.9e-176 135 -246 -187 -136 144 -246 -187 -217 141 -1250 -187 -136 129 -246 -114 -136 132 -1250 -146 -100 122 -246 -114 -100 132 -187 -346 -100 78 -346 -29 -8 -158 93 -346 74 -158 -187 179 -71 -8 106 -14 -117 -136 118 -87 15 -85 130 35 -136 -26 106 -14 -85 -59 124 13 -117 -17 -346 130 -36 0 118 35 -417 -317 106 71 -26 -136 45 171 -1250 -26 -187 179 -317 -1250 -1250 237 -417 78 -1250 113 -258 15 -46 54 -36 -1250 -1250 -1250 169 -417 200 -1250 -47 -1250 -1250 240 -1250 169 -1250 -1250 -1250 164 -1250 -1250 -317 -1250 240 -1250 -1250 -317 183 -187 -36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGMYSMCDVBGGGRDTCGAACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 58 E= 7.9e-176 0.793103 0.034483 0.051724 0.120690 0.844828 0.034483 0.051724 0.068966 0.827586 0.000000 0.051724 0.120690 0.758621 0.034483 0.086207 0.120690 0.775862 0.000000 0.068966 0.155172 0.724138 0.034483 0.086207 0.155172 0.775862 0.051724 0.017241 0.155172 0.534483 0.017241 0.155172 0.293103 0.103448 0.362069 0.017241 0.517241 0.103448 0.051724 0.655172 0.189655 0.293103 0.396552 0.172414 0.137931 0.120690 0.431034 0.103448 0.344828 0.172414 0.465517 0.241379 0.120690 0.258621 0.396552 0.172414 0.172414 0.206897 0.448276 0.206897 0.137931 0.275862 0.017241 0.465517 0.241379 0.310345 0.431034 0.241379 0.017241 0.034483 0.396552 0.310345 0.258621 0.120690 0.258621 0.620690 0.000000 0.258621 0.051724 0.655172 0.034483 0.000000 0.000000 0.982759 0.017241 0.534483 0.000000 0.413793 0.051724 0.344828 0.137931 0.275862 0.241379 0.000000 0.000000 0.000000 1.000000 0.017241 0.758621 0.000000 0.224138 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.965517 0.000000 0.000000 0.034483 0.000000 1.000000 0.000000 0.000000 0.034483 0.672414 0.051724 0.241379 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGMYSMCDVBGGGRDTCGAACC MEME-1 regular expression -------------------------------------------------------------------------------- AAAAAAA[AT][TC]G[CA][CT][CG][CA][CAG][GAT][CAG][CGT][GC][GA]G[AG][AGT]T[CT]GAAC[CT] -------------------------------------------------------------------------------- Time 353.70 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBYNCKTGGCCBAGTBGKTWAAGSSDHC MEME-2 width = 29 sites = 48 llr = 962 E-value = 3.6e-172 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBYNCKTGGCCBAGTBGKTWAAGSSDHC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :111221:2:::1a1:1::1576:::423 pos.-specific C :43325::::864:::2::2::1:55145 probability G 9522224:8a:13:9:4a61:32955211 matrix T 1144425a::232::a4:465:11::231 bits 2.4 * * 2.2 * * 1.9 * * * * * 1.7 * **** ** * * Relative 1.4 * **** *** * *** Entropy 1.2 * **** *** ** *** (28.9 bits) 1.0 * ***** *** ** *** 0.7 ** ***** *** ** ** *** 0.5 ** ****** *** ** ** *** * 0.2 **** ********************* ** 0.0 ----------------------------- Multilevel GGTTTCTTGGCCCAGTGGGTAAAGCCACC consensus CCCA G TG T T TG GGGTA sequence G C T C TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNCKTGGCCBAGTBGKTWAAGSSDHC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:602049-602553 + 61 7.38e-16 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrII:197171-197790 + 64 7.38e-16 CAGTAATCAA GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAAT chrXVI:818747-820334 + 39 7.38e-16 ACAATAGAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrIX:183320-183660 - 45 7.38e-16 ACAAATTCCT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrV:550902-551822 - 18 7.38e-16 ACAGATTACA GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXII:734653-734924 + 64 7.38e-16 AACAAAGTTT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAAT chrXII:732030-732243 + 4 1.69e-11 AAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTC AGATTTAGGT chrVII:823370-823667 + 14 3.78e-11 CAATAAGAGT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrV:438481-438997 + 11 3.78e-11 CAACAAATTA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXI:379508-379918 + 17 3.78e-11 CAGATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrX:378167-378267 + 57 3.78e-11 TAAATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXIII:372213-372741 - 63 3.78e-11 ATAAAACCT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrIV:437557-438068 + 10 4.29e-11 CATTAGTAA GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrXII:167759-168246 - 45 4.29e-11 ATAGTCATAT GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrXIII:259074-259393 - 28 4.29e-11 AAGTTAGTAT GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrXII:962823-963269 - 31 1.13e-10 TATTATCGAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrIV:519677-519894 + 8 1.13e-10 ATTTTAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrXI:84050-84398 + 34 1.13e-10 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrXII:628248-628617 + 1 1.13e-10 . GGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrX:424357-424457 - 7 1.13e-10 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTT chrVII:422905-423309 + 35 1.13e-10 ACAGATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrVII:774164-774514 + 60 1.43e-10 TCAATTAATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrXII:656863-657161 - 16 1.43e-10 CAAGAAAATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrIV:1150714-1151165 - 24 3.40e-10 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTTAAGGCGATG CCTGCTATTT chrXV:353925-354288 - 29 4.17e-10 ACGGTTTACT GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrVII:730973-731393 + 4 4.61e-10 AAA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrIII:127537-127852 + 72 4.61e-10 AAGATAAAAT GACTCCATGGCCAAGTTGGTTAAGGCGTG chrXV:228100-228618 + 22 4.61e-10 TAAAATATTA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXI:74537-74779 + 16 4.61e-10 ATAGCAATTA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXIV:374752-375073 + 7 6.84e-10 AAATAA GCGGACTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrIV:1095175-1095688 - 52 6.84e-10 TCTTATGTTA GCGGACTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrIII:227770-228202 + 6 6.84e-10 GAAAT GGCACTATGGCCGAGTGGTTAAGGCGAGA GACTCGAATG chrVII:115298-115711 + 34 9.98e-10 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrXI:578683-579291 + 28 9.98e-10 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrVIII:237761-238062 - 50 2.20e-09 CAAATAGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrII:36265-36526 + 53 2.20e-09 TTAGTTGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrX:422696-422796 + 20 4.90e-09 TCCTTTGTAT GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrIV:1175594-1176058 + 53 4.90e-09 ACAAAACAAA GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrX:390938-391038 - 15 4.90e-09 AAGAAATAGT GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrXIII:480408-480999 - 12 5.28e-09 ACAATAAGTA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrIV:1201508-1201963 + 65 5.28e-09 CAAATAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTT chrVII:121988-122578 + 36 5.28e-09 CAACGAATTA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrXVI:860162-860589 + 54 1.23e-08 TAAATAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrIV:83356-83800 + 20 1.23e-08 AGTTCACTTA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVI:162049-162374 + 67 1.23e-08 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGC chrXV:226601-226796 - 5 1.23e-08 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTG chrXV:340111-340570 - 53 5.56e-08 TCAAGATCTG TTCCTCGTGGCCCAATGGTCACGGCGTCT GGCTACGAAC chrXI:490762-491206 + 34 5.56e-08 ATAATTCTTG TTCCTCGTGGCCCAATGGTCACGGCGTCT GGCTACGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNCKTGGCCBAGTBGKTWAAGSSDHC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602049-602553 7.4e-16 60_[+2]_11 chrII:197171-197790 7.4e-16 63_[+2]_8 chrXVI:818747-820334 7.4e-16 38_[+2]_33 chrIX:183320-183660 7.4e-16 44_[-2]_27 chrV:550902-551822 7.4e-16 17_[-2]_54 chrXII:734653-734924 7.4e-16 63_[+2]_8 chrXII:732030-732243 1.7e-11 3_[+2]_68 chrVII:823370-823667 3.8e-11 13_[+2]_58 chrV:438481-438997 3.8e-11 10_[+2]_61 chrXI:379508-379918 3.8e-11 16_[+2]_55 chrX:378167-378267 3.8e-11 56_[+2]_15 chrXIII:372213-372741 3.8e-11 62_[-2]_9 chrIV:437557-438068 4.3e-11 9_[+2]_62 chrXII:167759-168246 4.3e-11 44_[-2]_27 chrXIII:259074-259393 4.3e-11 27_[-2]_44 chrXII:962823-963269 1.1e-10 30_[-2]_41 chrIV:519677-519894 1.1e-10 7_[+2]_64 chrXI:84050-84398 1.1e-10 33_[+2]_38 chrXII:628248-628617 1.1e-10 [+2]_71 chrX:424357-424457 1.1e-10 6_[-2]_65 chrVII:422905-423309 1.1e-10 34_[+2]_37 chrVII:774164-774514 1.4e-10 59_[+2]_12 chrXII:656863-657161 1.4e-10 15_[-2]_56 chrIV:1150714-1151165 3.4e-10 23_[-2]_48 chrXV:353925-354288 4.2e-10 28_[-2]_43 chrVII:730973-731393 4.6e-10 3_[+2]_68 chrIII:127537-127852 4.6e-10 71_[+2] chrXV:228100-228618 4.6e-10 21_[+2]_50 chrXI:74537-74779 4.6e-10 15_[+2]_56 chrXIV:374752-375073 6.8e-10 6_[+2]_65 chrIV:1095175-1095688 6.8e-10 51_[-2]_20 chrIII:227770-228202 6.8e-10 5_[+2]_66 chrVII:115298-115711 1e-09 33_[+2]_38 chrXI:578683-579291 1e-09 27_[+2]_44 chrVIII:237761-238062 2.2e-09 49_[-2]_22 chrII:36265-36526 2.2e-09 52_[+2]_19 chrX:422696-422796 4.9e-09 19_[+2]_52 chrIV:1175594-1176058 4.9e-09 52_[+2]_19 chrX:390938-391038 4.9e-09 14_[-2]_57 chrXIII:480408-480999 5.3e-09 11_[-2]_60 chrIV:1201508-1201963 5.3e-09 64_[+2]_7 chrVII:121988-122578 5.3e-09 35_[+2]_36 chrXVI:860162-860589 1.2e-08 53_[+2]_18 chrIV:83356-83800 1.2e-08 19_[+2]_52 chrVI:162049-162374 1.2e-08 66_[+2]_5 chrXV:226601-226796 1.2e-08 4_[-2]_67 chrXV:340111-340570 5.6e-08 52_[-2]_19 chrXI:490762-491206 5.6e-08 33_[+2]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNCKTGGCCBAGTBGKTWAAGSSDHC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBYNCKTGGCCBAGTBGKTWAAGSSDHC width=29 seqs=48 chrXIV:602049-602553 ( 61) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrII:197171-197790 ( 64) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXVI:818747-820334 ( 39) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrIX:183320-183660 ( 45) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrV:550902-551822 ( 18) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:734653-734924 ( 64) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:732030-732243 ( 4) GGGAGTTTGGCCGAGTGGTTTAAGGCGTC 1 chrVII:823370-823667 ( 14) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrV:438481-438997 ( 11) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXI:379508-379918 ( 17) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrX:378167-378267 ( 57) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXIII:372213-372741 ( 63) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrIV:437557-438068 ( 10) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrXII:167759-168246 ( 45) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrXIII:259074-259393 ( 28) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrXII:962823-963269 ( 31) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrIV:519677-519894 ( 8) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXI:84050-84398 ( 34) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXII:628248-628617 ( 1) GGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrX:424357-424457 ( 7) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrVII:422905-423309 ( 35) GGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrVII:774164-774514 ( 60) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXII:656863-657161 ( 16) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrIV:1150714-1151165 ( 24) GTCCCAGTGGCCGAGTGGTTAAGGCGATG 1 chrXV:353925-354288 ( 29) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrVII:730973-731393 ( 4) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrIII:127537-127852 ( 72) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXV:228100-228618 ( 22) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXI:74537-74779 ( 16) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXIV:374752-375073 ( 7) GCGGACTTAGCTCAGTTGGGAGAGCGCCA 1 chrIV:1095175-1095688 ( 52) GCGGACTTAGCTCAGTTGGGAGAGCGCCA 1 chrIII:227770-228202 ( 6) GGCACTATGGCCGAGTGGTTAAGGCGAGA 1 chrVII:115298-115711 ( 34) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrXI:578683-579291 ( 28) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrVIII:237761-238062 ( 50) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrII:36265-36526 ( 53) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrX:422696-422796 ( 20) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrIV:1175594-1176058 ( 53) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrX:390938-391038 ( 15) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrXIII:480408-480999 ( 12) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrIV:1201508-1201963 ( 65) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrVII:121988-122578 ( 36) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrXVI:860162-860589 ( 54) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrIV:83356-83800 ( 20) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVI:162049-162374 ( 67) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXV:226601-226796 ( 5) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXV:340111-340570 ( 53) TTCCTCGTGGCCCAATGGTCACGGCGTCT 1 chrXI:490762-491206 ( 34) TTCCTCGTGGCCCAATGGTCACGGCGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNCKTGGCCBAGTBGKTWAAGSSDHC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.3982 E= 3.6e-172 -1223 -1223 227 -190 -190 90 140 -231 -190 81 27 19 -157 72 -19 42 -44 14 -2 27 -90 127 -2 -73 -131 -1223 90 75 -1223 -1223 -1223 169 -73 -1223 210 -1223 -1223 -1223 240 -1223 -1223 210 -1223 -73 -1223 172 -86 -20 -157 114 40 -44 169 -1223 -1223 -1223 -157 -1223 224 -1223 -1223 -218 -1223 163 -231 14 98 19 -1223 -1223 240 -1223 -1223 -1223 172 27 -109 -19 -119 96 80 -1223 -1223 56 110 -218 62 -1223 101 -86 -19 -157 -1223 -1223 227 -190 -1223 151 127 -1223 -1223 151 127 -1223 42 -38 27 -58 -58 98 -86 1 -31 151 -86 -157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNCKTGGCCBAGTBGKTWAAGSSDHC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 48 E= 3.6e-172 0.000000 0.000000 0.916667 0.083333 0.083333 0.354167 0.500000 0.062500 0.083333 0.333333 0.229167 0.354167 0.104167 0.312500 0.166667 0.416667 0.229167 0.208333 0.187500 0.375000 0.166667 0.458333 0.187500 0.187500 0.125000 0.000000 0.354167 0.520833 0.000000 0.000000 0.000000 1.000000 0.187500 0.000000 0.812500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.812500 0.000000 0.187500 0.000000 0.625000 0.104167 0.270833 0.104167 0.416667 0.250000 0.229167 1.000000 0.000000 0.000000 0.000000 0.104167 0.000000 0.895833 0.000000 0.000000 0.041667 0.000000 0.958333 0.062500 0.208333 0.375000 0.354167 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.625000 0.375000 0.145833 0.166667 0.083333 0.604167 0.541667 0.000000 0.000000 0.458333 0.666667 0.041667 0.291667 0.000000 0.625000 0.104167 0.166667 0.104167 0.000000 0.000000 0.916667 0.083333 0.000000 0.541667 0.458333 0.000000 0.000000 0.541667 0.458333 0.000000 0.416667 0.145833 0.229167 0.208333 0.208333 0.375000 0.104167 0.312500 0.250000 0.541667 0.104167 0.104167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNCKTGGCCBAGTBGKTWAAGSSDHC MEME-2 regular expression -------------------------------------------------------------------------------- G[GC][TCG][TC][TAC]C[TG]TGGC[CT][CGT]AGT[GTC]G[GT]T[AT][AG]AG[CG][CG][AGT][CTA][CA] -------------------------------------------------------------------------------- Time 673.20 secs. ******************************************************************************** ******************************************************************************** MOTIF RSSKVAHRTGATARCCRTTACACTATMNC MEME-3 width = 29 sites = 17 llr = 401 E-value = 1.4e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif RSSKVAHRTGATARCCRTTACACTATMNC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6:::4634::7:76::6:193a::a1641 pos.-specific C :662334:1:3:::9a:3:17:a::1427 probability G 44454116:7:134::4::::::::1:22 matrix T :::4::3:93:9::1::79::::a:713: bits 2.4 * * 2.2 * * 1.9 * * 1.7 ** **** Relative 1.4 ** ** **** Entropy 1.2 ** *** * ** ******* * (34.0 bits) 1.0 *** ****************** * 0.7 **** * ****************** * * 0.5 ****** ******************** * 0.2 *************************** * 0.0 ----------------------------- Multilevel ACCGAACGTGATAACCATTACACTATAAC consensus GGGTGCAA TC GG GC A CTG sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSSKVAHRTGATARCCRTTACACTATMNC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIII:290605-291074 - 15 9.86e-14 CACGGTGAAA GCGTGATGTGATAGCCGTTACACTATATC GGATTATATT chrII:644973-645328 - 70 9.86e-14 AA GCGTGATGTGATAGCCGTTACACTATATC GGATAATAAC chrXVI:210028-210420 + 58 9.86e-14 CACGGTGAAA GCGTGATGTGATAGCCGTTACACTATATC GGACAATAAT chrXII:448451-448975 + 27 2.73e-13 CCGGATCAAA ACCGAAAGTGATAACCACTACACTATAGG ACCGGAACTT chrXIII:808154-808517 + 1 2.73e-13 . ACCGAAAGTGATAACCACTACACTATAGG ACCTTTTTCT chrIV:1016953-1017500 + 71 8.76e-13 CACGGTGAGA ACGTGATGTGATAGCCGTTACACTACATC G chrIX:197179-198087 - 12 8.76e-13 CACGGTGAGA ACGTGATGTGATAGCCGTTACACTACATC GGATTTGATT chrV:130858-131374 + 56 3.37e-12 TCGGATCAAA ACCGAAAGTGATAACCACTACACTATAAA ACCTCTTAAT chrXI:513293-513490 + 31 7.74e-12 GCACGCGACA AGCGCCCATTCTGACCATTAAACTATCAC GGAACGTTAT chrIX:324167-324522 + 49 7.74e-12 GCACGCGACA AGCGCCCATTCTGACCATTAAACTATCAC GGAATATTAG chrX:355223-355323 - 25 7.74e-12 GCACGCGACA AGCGCCCATTCTGACCATTAAACTATCAC GGAAGAAACA chrX:204516-204616 - 4 7.74e-12 GCACGCGACA AGCGCCCATTCTGACCATTAAACTATCAC GGA chrXII:426830-427439 - 51 7.74e-12 GCACGCGACA AGCGCCCATTCTGACCATTAAACTATCAC GGATAAGAAA chrIV:1075338-1075719 + 35 2.27e-11 TGCCGTGTGA AGGCAACGTGATAGCCGCTACACTATTGG AACAATATTA chrXV:110870-111176 + 29 3.60e-10 CACCTTGGAA GGGTGGGATGATAACCACTACACTAACCG CCCGGGTTAA chrVIII:388687-389188 + 72 1.01e-09 GCAGGAAGTC GCCCAAAGCGAGAATCATACCACTAGACC chrXV:464305-464567 - 72 1.01e-09 . GCCCAAAGCGAGAATCATACCACTAGACC ACACGCCCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSSKVAHRTGATARCCRTTACACTATMNC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:290605-291074 9.9e-14 14_[-3]_57 chrII:644973-645328 9.9e-14 69_[-3]_2 chrXVI:210028-210420 9.9e-14 57_[+3]_14 chrXII:448451-448975 2.7e-13 26_[+3]_45 chrXIII:808154-808517 2.7e-13 [+3]_71 chrIV:1016953-1017500 8.8e-13 70_[+3]_1 chrIX:197179-198087 8.8e-13 11_[-3]_60 chrV:130858-131374 3.4e-12 55_[+3]_16 chrXI:513293-513490 7.7e-12 30_[+3]_41 chrIX:324167-324522 7.7e-12 48_[+3]_23 chrX:355223-355323 7.7e-12 24_[-3]_47 chrX:204516-204616 7.7e-12 3_[-3]_68 chrXII:426830-427439 7.7e-12 50_[-3]_21 chrIV:1075338-1075719 2.3e-11 34_[+3]_37 chrXV:110870-111176 3.6e-10 28_[+3]_43 chrVIII:388687-389188 1e-09 71_[+3] chrXV:464305-464567 1e-09 71_[-3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSSKVAHRTGATARCCRTTACACTATMNC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RSSKVAHRTGATARCCRTTACACTATMNC width=29 seqs=17 chrXIII:290605-291074 ( 15) GCGTGATGTGATAGCCGTTACACTATATC 1 chrII:644973-645328 ( 70) GCGTGATGTGATAGCCGTTACACTATATC 1 chrXVI:210028-210420 ( 58) GCGTGATGTGATAGCCGTTACACTATATC 1 chrXII:448451-448975 ( 27) ACCGAAAGTGATAACCACTACACTATAGG 1 chrXIII:808154-808517 ( 1) ACCGAAAGTGATAACCACTACACTATAGG 1 chrIV:1016953-1017500 ( 71) ACGTGATGTGATAGCCGTTACACTACATC 1 chrIX:197179-198087 ( 12) ACGTGATGTGATAGCCGTTACACTACATC 1 chrV:130858-131374 ( 56) ACCGAAAGTGATAACCACTACACTATAAA 1 chrXI:513293-513490 ( 31) AGCGCCCATTCTGACCATTAAACTATCAC 1 chrIX:324167-324522 ( 49) AGCGCCCATTCTGACCATTAAACTATCAC 1 chrX:355223-355323 ( 25) AGCGCCCATTCTGACCATTAAACTATCAC 1 chrX:204516-204616 ( 4) AGCGCCCATTCTGACCATTAAACTATCAC 1 chrXII:426830-427439 ( 51) AGCGCCCATTCTGACCATTAAACTATCAC 1 chrIV:1075338-1075719 ( 35) AGGCAACGTGATAGCCGCTACACTATTGG 1 chrXV:110870-111176 ( 29) GGGTGGGATGATAACCACTACACTAACCG 1 chrVIII:388687-389188 ( 72) GCCCAAAGCGAGAATCATACCACTAGACC 1 chrXV:464305-464567 ( 72) GCCCAAAGCGAGAATCATACCACTAGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSSKVAHRTGATARCCRTTACACTATMNC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.3803 E= 1.4e-047 106 -1073 90 -1073 -1073 163 112 -1073 -1073 163 112 -1073 -1073 -10 131 19 19 63 90 -1073 106 63 -169 -1073 -8 90 -169 -8 19 -1073 177 -1073 -1073 -69 -1073 151 -1073 -1073 190 -8 118 63 -1073 -1073 -1073 -1073 -69 151 118 -1073 63 -1073 106 -1073 90 -1073 -1073 222 -1073 -140 -1073 240 -1073 -1073 106 -1073 90 -1073 -1073 63 -1073 118 -140 -1073 -1073 151 151 -69 -1073 -1073 -8 190 -1073 -1073 169 -1073 -1073 -1073 -1073 240 -1073 -1073 -1073 -1073 -1073 169 169 -1073 -1073 -1073 -240 -69 -69 118 92 90 -1073 -240 19 -10 -10 -8 -240 190 31 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSSKVAHRTGATARCCRTTACACTATMNC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 17 E= 1.4e-047 0.647059 0.000000 0.352941 0.000000 0.000000 0.588235 0.411765 0.000000 0.000000 0.588235 0.411765 0.000000 0.000000 0.176471 0.470588 0.352941 0.352941 0.294118 0.352941 0.000000 0.647059 0.294118 0.058824 0.000000 0.294118 0.352941 0.058824 0.294118 0.352941 0.000000 0.647059 0.000000 0.000000 0.117647 0.000000 0.882353 0.000000 0.000000 0.705882 0.294118 0.705882 0.294118 0.000000 0.000000 0.000000 0.000000 0.117647 0.882353 0.705882 0.000000 0.294118 0.000000 0.647059 0.000000 0.352941 0.000000 0.000000 0.882353 0.000000 0.117647 0.000000 1.000000 0.000000 0.000000 0.647059 0.000000 0.352941 0.000000 0.000000 0.294118 0.000000 0.705882 0.117647 0.000000 0.000000 0.882353 0.882353 0.117647 0.000000 0.000000 0.294118 0.705882 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.058824 0.117647 0.117647 0.705882 0.588235 0.352941 0.000000 0.058824 0.352941 0.176471 0.176471 0.294118 0.058824 0.705882 0.235294 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSSKVAHRTGATARCCRTTACACTATMNC MEME-3 regular expression -------------------------------------------------------------------------------- [AG][CG][CG][GT][AGC][AC][CAT][GA]T[GT][AC]T[AG][AG]CC[AG][TC]TA[CA]ACTAT[AC][AT][CG] -------------------------------------------------------------------------------- Time 988.77 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:392941-394754 8.48e-01 100 chrVIII:212107-212380 4.83e-01 100 chrXV:93071-94453 5.16e-01 100 chrVII:287247-287849 9.47e-01 100 chrXI:307956-308548 5.19e-02 100 chrII:36265-36526 4.52e-06 52_[+2(2.20e-09)]_19 chrIV:1449807-1450873 1.82e-03 16_[+2(1.75e-05)]_55 chrXVI:810601-811080 7.47e-01 100 chrXIII:768192-768407 7.64e-01 100 chrVII:541741-542131 3.09e-06 13_[-1(2.97e-10)]_57 chrVII:436872-437930 9.94e-01 100 chrXI:458470-459880 9.57e-01 100 chrIV:765256-765534 9.99e-01 100 chrIII:227770-228202 2.35e-06 5_[+2(6.84e-10)]_66 chrXVI:377839-378445 4.48e-01 100 chrIV:1080495-1080724 2.66e-01 100 chrXII:64310-65111 5.13e-02 100 chrIX:390142-390934 1.81e-01 100 chrXIV:568068-568506 4.09e-01 100 chrIV:976223-977255 1.05e-01 69_[+2(4.27e-05)]_2 chrXII:522709-523663 7.33e-02 100 chrIX:388809-389142 3.38e-02 100 chrI:25006-25438 8.95e-01 100 chrXI:533340-534496 9.90e-01 100 chrXVI:210028-210420 1.46e-17 9_[+1(1.87e-11)]_18_[+3(9.86e-14)]_\ 14 chrVII:479138-482764 6.40e-01 100 chrXV:761670-762388 6.36e-01 100 chrXII:231403-234216 4.32e-01 100 chrVII:857066-857577 8.54e-01 100 chrXV:867151-868011 5.75e-01 100 chrXIII:296950-298821 8.36e-01 100 chrV:152168-152753 6.17e-01 100 chrXVI:529692-531100 9.34e-01 100 chrII:706975-709147 8.94e-01 100 chrIV:892888-893089 8.57e-01 100 chrXV:723113-724613 2.06e-03 20_[+1(4.12e-07)]_50 chrII:266264-266775 9.84e-01 100 chrXIV:87480-88651 6.64e-01 100 chrI:141188-143634 6.48e-01 100 chrXII:875283-876123 8.32e-01 100 chrVIII:374916-375090 3.61e-01 100 chrX:540701-540801 3.56e-01 100 chrVII:422905-423309 7.43e-07 34_[+2(1.13e-10)]_37 chrVIII:492098-493590 5.24e-01 100 chrXIII:13019-13559 7.76e-02 27_[+1(7.64e-05)]_43 chrXIII:372213-372741 9.83e-14 9_[+1(4.18e-10)]_23_[-2(3.78e-11)]_\ 9 chrXIV:392265-393267 1.24e-01 100 chrXIV:738293-739090 6.25e-01 100 chrVII:519384-521254 2.82e-01 100 chrXVI:744092-744507 1.01e-01 100 chrXIII:259074-259393 6.83e-07 27_[-2(4.29e-11)]_44 chrIX:248446-248935 3.38e-01 100 chrXV:622665-623194 3.08e-01 100 chrXIII:362979-364398 5.66e-01 100 chrVII:972161-974012 2.84e-01 100 chrXII:97104-97907 5.86e-01 100 chrX:424357-424457 2.05e-06 6_[-2(1.13e-10)]_65 chrVII:277591-278738 6.18e-02 100 chrXVI:296932-297323 4.77e-02 100 chrVII:121988-122578 3.55e-05 35_[+2(5.28e-09)]_36 chrXI:490762-491206 2.68e-04 33_[+2(5.56e-08)]_38 chrXII:1028813-1030318 5.19e-01 100 chrII:395863-398178 8.48e-01 100 chrXI:158622-159569 2.98e-01 100 chrV:363651-364536 5.24e-02 70_[+1(4.04e-05)] chrIV:1232910-1235153 2.90e-01 100 chrVII:397973-398194 9.06e-01 100 chrXIII:551957-553309 3.18e-01 100 chrXIV:301462-302005 8.21e-01 100 chrXIII:288067-289649 1.13e-01 100 chrXII:674283-675040 5.43e-01 100 chrVIII:126490-127777 2.39e-01 100 chrXI:302669-303190 2.23e-01 100 chrXII:167759-168246 3.62e-07 44_[-2(4.29e-11)]_27 chrXIII:195950-196268 1.45e-05 [+1(4.14e-09)]_70 chrIV:118447-118857 8.66e-01 100 chrV:435329-435923 7.43e-01 100 chrXII:628248-628617 2.58e-06 [+2(1.13e-10)]_71 chrIV:1402182-1403515 6.34e-01 100 chrXII:426830-427439 3.39e-09 50_[-3(7.74e-12)]_21 chrIII:16663-16933 7.06e-01 100 chrXVI:431814-434582 7.97e-01 100 chrVII:148058-148990 9.92e-01 100 chrIII:141982-143308 9.86e-01 100 chrVII:912764-913619 8.99e-01 100 chrXII:605274-605976 3.81e-01 100 chrII:234838-235996 9.71e-01 100 chrXIII:131604-132086 6.86e-07 21_[+1(6.15e-11)]_49 chrXV:978569-979015 9.25e-02 100 chrVIII:229438-230785 6.28e-01 100 chrVII:344058-346639 6.67e-01 100 chrXI:230106-230473 9.09e-01 100 chrXVI:98434-99004 5.84e-01 100 chrVII:914684-916566 4.01e-01 100 chrXV:252847-253647 8.63e-01 100 chrVII:845417-846196 7.63e-01 100 chrIV:415131-417510 6.21e-01 100 chrXII:734653-734924 2.01e-11 63_[+2(7.38e-16)]_8 chrXVI:794927-796051 1.18e-01 22_[-1(7.64e-05)]_48 chrX:75889-75989 7.10e-01 100 chrVII:1048-2098 7.14e-01 100 chrXII:347951-348693 6.28e-01 100 chrXVI:571987-572468 8.31e-01 100 chrIV:331063-333135 9.57e-01 100 chrXII:573203-573773 6.75e-01 100 chrIII:150902-151560 8.22e-01 100 chrVIII:237761-238062 2.76e-06 49_[-2(2.20e-09)]_22 chrXVI:880071-880528 8.17e-09 38_[+1(2.15e-11)]_32 chrII:408674-408887 9.92e-01 100 chrXV:170574-170754 1.77e-01 100 chrXIII:321084-321635 7.72e-01 100 chrIX:393285-393696 7.80e-01 100 chrVII:110380-110757 3.61e-01 100 chrIV:601220-602344 1.68e-01 100 chrV:249820-250520 1.11e-02 13_[+2(6.48e-05)]_58 chrIV:992703-993353 8.98e-01 100 chrIII:177081-178200 3.99e-04 50_[-1(2.79e-06)]_20 chrIV:410231-410426 7.71e-01 100 chrII:254211-255841 9.64e-01 100 chrXV:464305-464567 4.80e-09 71_[-3(1.01e-09)] chrVII:878326-879073 2.82e-05 52_[+1(7.28e-09)]_18 chrXIII:887001-889357 3.62e-01 100 chrVIII:475502-475879 9.36e-05 57_[+1(4.42e-08)]_13 chrIV:1201508-1201963 3.92e-05 64_[+2(5.28e-09)]_7 chrVI:137237-137746 5.85e-07 36_[+1(1.46e-10)]_34 chrVII:748761-749915 6.46e-01 100 chrXVI:74748-76263 2.66e-01 100 chrXIV:173760-174620 8.15e-02 100 chrXV:903973-905744 4.51e-01 100 chrX:745163-745263 1.44e-02 31_[-3(1.32e-05)]_40 chrVII:828455-828952 2.01e-08 61_[+1(1.53e-12)]_9 chrX:607262-607362 1.20e-01 100 chrXII:821659-823213 3.16e-01 100 chrII:301110-301533 7.29e-01 100 chrXVI:768564-769434 9.53e-01 100 chrXIV:61949-62941 9.04e-01 100 chrII:256163-257650 6.34e-01 100 chrIX:231297-231660 4.78e-01 100 chrVII:784205-785283 2.40e-01 100 chrXII:198375-199691 3.39e-01 100 chrXI:578683-579291 1.19e-07 27_[+2(9.98e-10)]_44 chrV:550902-551822 4.17e-11 17_[-2(7.38e-16)]_54 chrIV:218297-218803 2.61e-01 100 chrII:347441-347986 1.83e-03 1_[-1(3.86e-07)]_69 chrX:617713-617813 5.71e-01 100 chrIX:183320-183660 1.15e-13 11_[-1(8.76e-05)]_3_[-2(7.38e-16)]_\ 27 chrVII:771756-773354 5.64e-02 100 chrXI:84050-84398 1.92e-06 33_[+2(1.13e-10)]_38 chrXI:333324-334942 6.50e-01 100 chrVIII:372714-374095 3.78e-01 100 chrXIV:302645-303804 1.78e-01 100 chrI:71757-73654 6.03e-01 100 chrXIII:761549-763113 7.48e-01 100 chrXIII:302728-303005 1.10e-02 10_[+1(5.79e-05)]_60 chrIV:884864-885088 6.54e-01 100 chrVI:53236-54423 3.12e-01 100 chrVII:824480-827307 4.92e-01 100 chrX:390247-390347 7.86e-01 100 chrXVI:404873-406002 6.17e-01 100 chrIV:805712-806579 8.06e-01 100 chrVIII:381490-382753 7.94e-01 100 chrIV:308453-310171 2.43e-01 100 chrVII:316811-317374 9.62e-01 100 chrVII:574800-574979 9.89e-01 100 chrXIII:306080-306349 9.33e-01 100 chrIV:338301-339999 1.71e-01 100 chrIV:1012560-1013239 6.64e-01 100 chrIII:90802-91055 3.23e-01 100 chrXI:74537-74779 7.91e-13 15_[+2(4.61e-10)]_23_[-1(2.65e-10)]_\ 3 chrXV:228100-228618 7.77e-07 21_[+2(4.61e-10)]_50 chrX:454256-454356 5.27e-01 100 chrXV:274511-275011 8.58e-06 40_[-1(3.09e-09)]_30 chrIII:308614-308990 3.86e-02 100 chrXIV:442905-444277 8.24e-01 100 chrV:135218-135605 2.46e-08 55_[+1(2.46e-11)]_15 chrXIV:725668-726269 3.94e-01 100 chrX:651903-652003 1.79e-01 100 chrXIV:585506-586579 7.95e-01 100 chrIX:316149-316470 7.71e-01 100 chrVII:323400-324127 7.08e-01 100 chrXIII:225923-226679 1.96e-01 100 chrXVI:818747-820334 1.15e-13 38_[+2(7.38e-16)]_3_[+1(8.76e-05)] chrIV:519677-519894 5.71e-11 7_[+2(1.13e-10)]_33_[-1(2.77e-07)]_\ 1 chrX:59086-59186 9.46e-01 100 chrII:38170-38664 2.34e-01 100 chrIX:300065-301049 5.46e-01 100 chrXI:364544-365195 3.77e-01 100 chrV:141080-141346 5.15e-01 100 chrX:622307-622407 9.08e-01 100 chrXII:898097-899661 1.40e-01 100 chrXII:805839-806842 6.21e-01 100 chrII:326505-327350 9.19e-01 100 chrIV:555410-556621 7.90e-02 100 chrIV:488508-488957 6.06e-01 100 chrXVI:213061-213833 7.01e-02 100 chrVIII:461784-462251 9.91e-01 100 chrXV:160416-160729 8.33e-01 100 chrXI:140826-141491 8.23e-01 100 chrX:115921-116021 4.13e-01 100 chrV:441896-442633 4.43e-01 100 chrXV:216345-216578 3.69e-01 100 chrXIV:289437-291178 8.37e-01 100 chrXIII:420352-420774 1.14e-06 66_[+1(4.14e-09)]_4 chrXIV:664279-665418 6.45e-01 100 chrII:197171-197790 1.05e-11 63_[+2(7.38e-16)]_8 chrIX:426883-427174 5.71e-01 100 chrVII:319223-320121 8.40e-01 100 chrX:542814-542914 1.45e-01 100 chrVII:805852-807775 4.11e-01 100 chrIV:520346-521094 5.62e-01 100 chrXVI:451783-453199 8.36e-01 100 chrXIII:253380-253747 1.84e-01 100 chrXVI:406631-408390 4.44e-01 100 chrXII:732030-732243 3.34e-08 3_[+2(1.69e-11)]_68 chrXV:370929-371329 9.25e-01 100 chrIV:915030-916230 6.21e-01 100 chrIII:161975-163343 8.96e-01 100 chrXVI:352291-352604 3.25e-01 100 chrXII:440745-441692 2.57e-01 100 chrVII:227456-228086 6.51e-01 100 chrXIV:102622-103235 9.73e-01 100 chrXI:431925-432477 4.97e-01 100 chrXVI:581824-582492 1.61e-07 4_[-1(2.46e-11)]_66 chrXVI:136377-136803 9.08e-01 100 chrV:311745-312286 7.83e-04 49_[+1(1.48e-07)]_21 chrVI:180615-181625 3.91e-01 100 chrII:380980-381288 6.20e-03 38_[-1(3.49e-05)]_32 chrXIII:37256-37966 9.64e-02 100 chrVII:661550-661889 8.26e-01 100 chrIV:1075338-1075719 6.07e-09 34_[+3(2.27e-11)]_37 chrIX:68680-69567 9.93e-01 100 chrXV:979721-981345 6.60e-01 100 chrVII:882779-884170 2.58e-01 100 chrXV:896668-898342 1.90e-01 100 chrXII:656863-657161 7.21e-09 15_[-2(1.43e-10)]_56 chrVII:366221-366662 5.79e-01 100 chrXIII:626170-626920 8.84e-01 100 chrVII:798916-800168 8.00e-01 100 chrXIII:880594-880895 8.75e-01 100 chrXIV:454831-454998 4.18e-01 100 chrXII:261186-262535 2.41e-01 100 chrVI:226442-226887 2.14e-05 65_[+1(2.80e-09)]_5 chrXI:100661-104695 1.88e-01 100 chrVII:599330-601373 6.48e-01 100 chrXV:619083-621292 6.75e-01 100 chrVII:726907-728351 2.66e-01 100 chrIV:974285-976000 6.47e-01 100 chrX:139054-139154 3.86e-01 100 chrII:478973-479565 3.04e-01 100 chrIV:359199-359751 2.86e-01 100 chrXII:87722-88610 4.33e-02 100 chrVII:544424-544928 9.76e-01 100 chrXII:855365-857567 2.89e-01 100 chrXIII:352099-352622 4.57e-04 38_[-1(2.26e-07)]_32 chrVII:255189-255721 2.85e-01 100 chrX:378167-378267 6.20e-07 56_[+2(3.78e-11)]_15 chrXVI:700476-700690 8.03e-01 100 chrII:644973-645328 1.86e-09 69_[-3(9.86e-14)]_2 chrIX:257578-257966 4.35e-01 100 chrVI:191105-191675 6.78e-01 100 chrXV:663490-664899 3.34e-01 100 chrV:431050-432043 7.37e-01 100 chrXVI:173027-174106 9.97e-01 100 chrXVI:194122-194627 5.11e-01 100 chrXIII:425179-426017 2.55e-01 100 chrIV:355050-356959 6.87e-02 100 chrVII:328365-329204 9.55e-01 100 chrXIV:181479-182319 8.27e-01 100 chrV:284724-284922 2.45e-01 100 chrXVI:645283-646184 7.25e-01 100 chrXII:449521-450236 7.84e-01 100 chrXIII:219038-220944 6.24e-01 100 chrXIII:752918-754227 2.48e-01 100 chrX:390938-391038 1.66e-05 14_[-2(4.90e-09)]_57 chrXVI:214870-215215 9.11e-01 100 chrVII:1019765-1021712 3.45e-01 100 chrVIII:123474-123963 6.36e-01 100 chrIV:1175594-1176058 1.98e-05 52_[+2(4.90e-09)]_19 chrXIII:808154-808517 4.49e-10 [+3(2.73e-13)]_71 chrVII:310682-312572 7.38e-01 100 chrIX:190822-191875 7.25e-01 100 chrXV:226601-226796 6.12e-05 4_[-2(1.23e-08)]_67 chrXII:975810-976091 6.48e-01 100 chrX:204516-204616 1.06e-17 3_[-3(7.74e-12)]_18_[-1(4.49e-12)]_\ 20 chrXIII:19016-21537 4.52e-01 100 chrVIII:115547-116285 9.22e-01 100 chrIV:1095175-1095688 2.48e-07 51_[-2(6.84e-10)]_20 chrIV:386269-386883 9.59e-01 100 chrVIII:144883-146561 2.28e-01 100 chrII:680360-681921 2.83e-01 100 chrX:227761-227861 6.36e-02 39_[+1(6.66e-05)]_31 chrXV:80363-81441 9.50e-01 100 chrXI:558329-559423 3.48e-01 100 chrIV:542081-542412 9.81e-01 100 chrVI:157916-158218 6.06e-01 100 chrXIII:348078-348994 7.26e-01 100 chrXIII:168781-169000 1.87e-05 21_[-1(3.09e-09)]_49 chrXV:832351-832851 9.70e-01 100 chrVII:405492-405816 9.99e-01 100 chrV:176907-177460 9.61e-07 15_[-1(1.30e-10)]_55 chrVII:115298-115711 1.83e-07 33_[+2(9.98e-10)]_38 chrVII:779380-779690 1.73e-01 100 chrXIII:463460-463826 7.21e-08 10_[-1(4.49e-12)]_60 chrX:647891-647991 9.70e-01 100 chrVI:31063-31409 8.02e-01 100 chrVII:706943-707165 9.97e-01 100 chrV:469271-470135 4.60e-01 100 chrIV:579412-580853 2.61e-01 100 chrII:604464-605793 1.73e-01 100 chrIV:434114-435078 1.35e-01 100 chrIV:526988-527543 4.31e-01 100 chrX:122196-122296 7.24e-01 100 chrXVI:282089-282967 3.13e-01 100 chrXIII:726389-729924 3.88e-01 100 chrXV:109693-110670 4.19e-01 100 chrXIV:415130-416162 4.88e-01 100 chrIV:945800-946601 1.24e-01 100 chrIV:132495-133248 7.09e-01 100 chrXII:459652-460157 5.36e-02 100 chrXIV:632528-632907 6.39e-01 100 chrXIII:747695-748119 5.05e-06 26_[+1(5.23e-10)]_44 chrXII:951057-952099 8.54e-01 100 chrXII:665074-665410 3.27e-01 100 chrXIV:461300-462191 7.60e-02 100 chrXVI:338775-339312 6.80e-01 100 chrIV:1353711-1355506 8.05e-01 100 chrII:87966-88560 5.20e-01 100 chrXVI:108761-111638 8.81e-01 100 chrXV:381893-383923 8.28e-01 100 chrXV:92714-92911 4.04e-01 100 chrIV:491487-492615 5.51e-01 100 chrV:306300-307668 1.32e-01 100 chrXII:592366-592693 1.32e-05 31_[+1(1.69e-09)]_39 chrXI:379508-379918 8.58e-13 16_[+2(3.78e-11)]_23_[-1(4.14e-09)]_\ 2 chrXV:779896-780977 3.45e-01 100 chrXI:517797-518051 6.63e-01 100 chrXIV:331453-332470 1.28e-01 100 chrXV:1027798-1029209 2.15e-01 100 chrVIII:555744-556338 1.55e-01 100 chrXV:159253-160144 8.09e-01 100 chrXIV:229565-230654 6.61e-01 100 chrV:85158-86751 8.46e-01 100 chrX:517697-517797 9.79e-04 29_[+1(1.46e-06)]_41 chrXIV:24132-26764 5.77e-01 100 chrVII:1004059-1004394 1.35e-01 100 chrVII:794258-794493 8.25e-01 100 chrXVI:678659-680789 6.24e-01 100 chrVIII:554213-554745 7.03e-01 100 chrX:236540-236640 3.30e-01 100 chrIX:249099-249370 8.40e-01 100 chrXV:1073391-1073943 7.98e-01 100 chrXI:113115-114647 1.76e-01 100 chrIV:306652-307634 4.30e-01 100 chrIV:464229-470965 8.54e-01 100 chrXV:877504-878098 3.95e-01 100 chrXIII:504668-505237 4.28e-01 100 chrV:102210-103221 9.90e-01 100 chrIX:197179-198087 2.01e-17 11_[-3(8.76e-13)]_18_[-1(1.79e-12)]_\ 12 chrXVI:718374-719398 8.54e-01 100 chrIV:720192-721579 9.17e-01 100 chrIII:127537-127852 4.13e-06 71_[+2(4.61e-10)] chrXI:778-1093 4.20e-01 100 chrXV:571432-572135 7.04e-01 100 chrIX:127444-127994 3.38e-01 100 chrXIII:161778-164289 1.77e-01 100 chrXIII:671691-674759 7.38e-01 100 chrIII:149740-150191 1.30e-04 54_[-1(1.29e-07)]_16 chrXVI:297608-298738 8.83e-01 100 chrIV:757467-758378 4.19e-01 100 chrXVI:215424-216309 7.01e-01 100 chrXV:758940-759510 8.21e-01 100 chrXII:281965-284094 4.14e-01 100 chrXII:366049-366524 2.90e-01 100 chrXII:214722-215035 4.77e-07 46_[+1(2.15e-11)]_24 chrXIII:631129-634407 7.10e-01 100 chrXV:287752-288368 5.46e-01 100 chrXII:460493-460673 1.75e-01 100 chrXV:353925-354288 2.41e-06 28_[-2(4.17e-10)]_43 chrXII:498841-500114 7.85e-01 100 chrV:67115-69552 4.01e-01 100 chrXIII:747240-747440 7.30e-01 100 chrXII:636691-639951 3.08e-01 100 chrII:412726-415211 9.91e-01 100 chrX:197166-197266 5.59e-06 25_[+1(1.69e-09)]_45 chrVIII:411014-411681 2.43e-01 100 chrX:73689-73789 3.46e-01 100 chrVI:56852-57733 8.99e-01 100 chrIV:1236411-1238754 8.08e-01 100 chrVIII:358303-359130 6.06e-01 100 chrXII:242212-243434 6.99e-01 100 chrVII:730973-731393 1.48e-11 3_[+2(4.61e-10)]_23_[-1(4.14e-09)]_\ 15 chrXIV:215505-217057 9.49e-01 100 chrV:424601-425335 8.01e-01 100 chrXVI:775682-776058 9.79e-01 100 chrVIII:147660-148700 6.79e-02 5_[+3(4.69e-05)]_66 chrVII:439008-440342 7.38e-01 100 chrVII:555751-558034 6.97e-01 100 chrVIII:388687-389188 4.55e-07 71_[+3(1.01e-09)] chrX:90741-90841 4.93e-01 100 chrVII:531286-531765 3.80e-01 100 chrXIV:715465-716632 8.74e-01 100 chrXVI:622296-622814 1.20e-04 26_[+1(7.64e-08)]_44 chrIV:1502029-1502767 6.19e-01 100 chrIV:47462-47858 4.60e-01 100 chrVI:210423-210887 1.21e-05 5_[+1(3.09e-09)]_65 chrXI:163350-164474 9.91e-01 100 chrXVI:280560-281602 7.46e-01 100 chrXI:312038-313579 1.58e-01 100 chrXI:340558-341427 2.56e-01 100 chrIV:506518-507266 9.65e-01 100 chrVII:483364-483748 5.52e-01 100 chrVI:162049-162374 1.10e-05 66_[+2(1.23e-08)]_5 chrIV:83356-83800 5.45e-11 19_[+2(1.23e-08)]_20_[-1(2.07e-09)]_\ 2 chrXII:793759-796369 7.87e-01 100 chrV:322079-323269 9.42e-01 100 chrVIII:204163-204679 3.83e-01 100 chrV:260425-261432 7.05e-01 100 chrX:525928-526028 5.91e-02 5_[-2(8.89e-05)]_66 chrIV:221153-221885 2.03e-02 8_[+3(6.39e-05)]_63 chrXV:110870-111176 2.14e-07 28_[+3(3.60e-10)]_43 chrIV:568467-569807 5.43e-01 100 chrXI:326013-327572 3.99e-01 100 chrIV:322208-323614 2.65e-01 100 chrXI:282812-284477 9.28e-01 100 chrII:168487-169647 8.67e-01 100 chrXIV:546594-547367 2.47e-01 100 chrVIII:119747-121704 7.08e-01 100 chrXIV:493702-495012 3.39e-01 100 chrXIII:300814-302482 2.53e-01 100 chrIV:892027-892701 5.54e-01 100 chrXIII:290605-291074 1.46e-17 14_[-3(9.86e-14)]_18_[-1(1.87e-11)]_\ 9 chrX:415690-415790 2.51e-05 3_[+1(2.29e-09)]_67 chrVII:774164-774514 8.78e-09 59_[+2(1.43e-10)]_12 chrVII:185520-185792 8.27e-01 100 chrXIV:602049-602553 1.45e-11 60_[+2(7.38e-16)]_11 chrXIII:651312-652880 9.46e-01 100 chrIX:98260-99452 7.42e-01 100 chrX:396148-396248 4.75e-01 100 chrXIV:96055-96397 4.30e-07 56_[+1(2.09e-10)]_14 chrXVI:842841-843922 9.57e-01 100 chrXIV:576661-577399 3.72e-02 67_[-1(5.59e-05)]_3 chrXV:797005-798929 6.74e-02 100 chrIV:234268-234573 5.21e-01 100 chrXV:960917-966708 6.68e-01 100 chrV:138508-140430 5.76e-01 100 chrXVI:860162-860589 3.87e-05 53_[+2(1.23e-08)]_18 chrII:350660-350937 1.03e-01 100 chrVII:533311-535106 6.51e-01 100 chrIV:667684-668564 9.03e-01 100 chrI:138945-139314 4.09e-01 100 chrVIII:122247-122642 5.36e-01 100 chrXV:727682-729705 5.16e-01 100 chrVIII:34398-36116 8.47e-01 100 chrIV:1239422-1240199 2.89e-01 100 chrV:117224-117382 4.21e-01 100 chrX:453212-453312 3.07e-01 100 chrXI:258597-260032 1.19e-01 100 chrXII:712267-712724 9.79e-01 100 chrXV:281850-282937 7.06e-01 100 chrXV:96285-96853 8.70e-01 100 chrVIII:133615-134663 8.69e-01 100 chrXV:340111-340570 9.82e-12 [+1(2.81e-11)]_22_[-2(5.56e-08)]_19 chrXIII:498663-500743 6.61e-01 100 chrI:166189-166705 8.44e-01 100 chrXVI:193105-193933 9.54e-01 100 chrV:130858-131374 2.54e-16 7_[+1(1.15e-10)]_18_[+3(3.37e-12)]_\ 16 chrX:233730-233830 1.63e-01 100 chrII:227001-227340 9.82e-07 14_[-1(1.15e-10)]_56 chrXII:797025-797249 9.38e-01 100 chrVII:736215-736883 1.00e+00 100 chrV:379609-382203 9.62e-01 100 chrIV:1488763-1490726 3.97e-02 100 chrXIV:217250-217583 6.03e-01 100 chrIV:129908-130857 5.74e-01 100 chrVII:939046-939667 1.00e+00 100 chrXV:113443-113871 5.16e-01 100 chrXII:1039225-1041484 2.83e-01 100 chrXIII:837761-838180 1.58e-01 100 chrVII:700429-701132 1.79e-06 4_[-1(1.00e-09)]_66 chrXIV:374752-375073 5.06e-07 6_[+2(6.84e-10)]_65 chrXVI:701862-702315 8.42e-01 100 chrVIII:375248-376789 1.67e-01 100 chrXII:1017532-1018957 2.33e-01 100 chrX:531502-531602 9.25e-01 100 chrXV:464801-465100 9.31e-01 100 chrIV:229865-230685 2.02e-01 100 chrXV:363634-364619 5.22e-01 100 chrVIII:132932-133346 9.68e-01 100 chrXIII:123194-123927 8.62e-01 100 chrXII:448451-448975 1.35e-11 26_[+3(2.73e-13)]_45 chrXV:976390-976721 9.83e-01 100 chrXIII:480408-480999 2.26e-05 11_[-2(5.28e-09)]_60 chrXV:87444-88463 9.11e-03 100 chrVI:224300-225750 1.86e-01 100 chrX:663658-663758 6.82e-01 100 chrXV:900073-901208 5.19e-01 100 chrVII:205184-206126 8.10e-05 7_[-1(1.78e-08)]_63 chrIV:1328913-1329989 7.24e-01 100 chrII:443819-445166 7.37e-01 100 chrIX:316747-318303 2.08e-01 100 chrIX:427349-427767 2.30e-01 100 chrX:374194-374294 5.07e-07 23_[+1(6.15e-11)]_47 chrIX:212624-214697 1.69e-01 100 chrXII:784097-784447 4.11e-01 100 chrVII:412229-412565 5.14e-01 100 chrXV:444640-446174 5.79e-01 100 chrIII:295374-296250 8.42e-01 100 chrXI:575315-576364 2.87e-02 2_[-3(2.15e-05)]_21_[-3(4.69e-05)]_\ 19 chrXII:962823-963269 1.53e-07 30_[-2(1.13e-10)]_41 chrXVI:303108-305015 4.32e-01 100 chrXV:912050-912582 7.79e-01 100 chrII:406595-406981 5.43e-01 100 chrXV:409328-409830 2.26e-02 100 chrXII:367735-370913 5.62e-01 100 chrXI:46729-47005 8.46e-01 100 chrV:77978-79457 6.00e-02 100 chrXIII:572659-573109 7.80e-08 40_[+1(4.76e-11)]_30 chrV:438481-438997 2.57e-14 10_[+2(3.78e-11)]_23_[-1(1.02e-10)]_\ 8 chrII:591533-591790 9.94e-01 100 chrIX:111362-111946 8.83e-01 100 chrII:466671-466876 5.88e-01 100 chrIV:541198-541907 7.13e-01 100 chrIX:25947-26326 5.82e-01 100 chrX:355223-355323 2.53e-09 24_[-3(7.74e-12)]_47 chrXII:374221-374686 4.60e-07 2_[-1(2.81e-11)]_68 chrX:172754-172854 8.19e-01 100 chrXV:854165-854763 1.61e-01 100 chrXIII:306508-307127 4.02e-01 100 chrXII:949074-950283 7.97e-01 100 chrV:354823-355628 4.62e-01 100 chrVII:440678-441118 3.51e-01 100 chrX:422696-422796 5.32e-12 19_[+2(4.90e-09)]_22_[-1(7.27e-10)] chrIX:386681-386921 1.27e-01 100 chrIII:137758-139011 4.12e-01 100 chrIV:1305396-1305763 9.60e-01 100 chrXII:837703-839410 2.40e-01 100 chrX:348823-348923 5.17e-01 100 chrVI:101399-101722 1.76e-01 2_[-1(8.47e-05)]_68 chrII:236507-237369 8.82e-01 100 chrVIII:75368-76278 8.32e-01 100 chrXIV:560094-560770 9.81e-01 100 chrIII:513-1139 2.78e-01 100 chrIX:324167-324522 1.06e-17 [+1(4.49e-12)]_18_[+3(7.74e-12)]_23 chrXIV:480637-481268 8.53e-01 100 chrIII:123507-123757 4.78e-06 29_[+3(4.84e-07)]_42 chrXV:622107-622348 9.51e-01 100 chrVI:167286-167723 1.87e-05 49_[-1(3.09e-09)]_21 chrXVI:55841-56330 5.27e-01 100 chrV:51816-53258 9.28e-01 100 chrXVI:559895-560445 2.87e-03 69_[+1(3.39e-07)]_1 chrXIV:739307-739679 8.36e-01 100 chrIV:189136-190293 1.72e-01 100 chrXV:380303-381209 3.04e-02 36_[-2(3.71e-05)]_35 chrIV:1150714-1151165 4.11e-07 23_[-2(3.40e-10)]_48 chrV:207403-207912 9.61e-01 100 chrXII:65329-65762 4.54e-02 100 chrXII:809760-815746 1.79e-01 100 chrXVI:502914-503116 4.29e-01 100 chrXII:568069-568831 3.70e-01 100 chrX:212205-212305 6.87e-01 100 chrIV:1360029-1361276 3.96e-01 100 chrXIII:146636-148075 9.45e-01 100 chrIX:118359-121583 3.14e-02 50_[-2(6.30e-05)]_21 chrXIV:575213-576261 3.61e-01 100 chrXI:518799-521064 1.57e-01 100 chrIX:325547-326071 3.82e-07 39_[-1(8.97e-11)]_31 chrVII:823370-823667 1.34e-12 13_[+2(3.78e-11)]_23_[-1(6.64e-09)]_\ 5 chrVII:363675-364434 9.89e-01 100 chrV:117544-118173 6.96e-01 100 chrVII:592100-592733 4.85e-02 100 chrIV:802617-802823 2.71e-06 52_[+1(5.23e-10)]_18 chrVII:738842-739335 6.11e-01 100 chrIV:914003-914859 1.64e-01 100 chrXIII:378819-379656 4.45e-01 100 chrXIII:90950-92096 5.61e-01 100 chrXIV:104653-105227 9.61e-01 100 chrXIV:505894-507606 8.39e-01 100 chrXV:254294-254719 7.45e-01 100 chrII:477181-477774 7.57e-02 100 chrXV:677629-678806 9.16e-01 100 chrVII:516327-518993 9.04e-01 100 chrVIII:451278-453077 2.88e-01 100 chrV:287922-288828 2.75e-01 100 chrXIV:251077-251311 6.60e-01 100 chrXII:86890-87257 6.63e-01 100 chrXI:513293-513490 2.53e-09 30_[+3(7.74e-12)]_41 chrXI:162451-162649 1.47e-01 100 chrIV:437557-438068 1.05e-12 9_[+2(4.29e-11)]_31_[-1(3.75e-09)]_\ 1 chrIV:1016953-1017500 5.50e-17 22_[+1(3.33e-12)]_18_[+3(8.76e-13)]_\ 1 chrII:165189-165481 7.52e-01 100 chrXVI:434855-436199 4.20e-01 100 chrXIV:413555-414968 5.60e-01 100 chrI:203223-203464 8.38e-01 100 chrVII:364891-366037 2.65e-01 100 chrIV:1461313-1461817 4.79e-01 100 chrXVI:425779-425973 7.06e-01 100 chrII:237692-238091 9.98e-01 100 chrVII:609356-610099 7.64e-01 100 chrX:120294-120394 1.97e-01 100 chrXIV:253201-254136 1.91e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************