******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--THP2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:197307-197817 1.0000 100 chrVIII:126495-127819 1.0000 100 chrXV:110144-111177 1.0000 100 chrVII:53695-53911 1.0000 100 chrXI:282807-284961 1.0000 100 chrI:71747-73676 1.0000 100 chrIV:1090152-1090442 1.0000 100 chrXVI:810595-811308 1.0000 100 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chrIV:437564-437975 1.0000 100 chrVII:906879-908903 1.0000 100 chrXII:695053-696724 1.0000 100 chrII:529374-531824 1.0000 100 chrIV:1200758-1201961 1.0000 100 chrVII:281314-283554 1.0000 100 chrIV:720582-721561 1.0000 100 chrXI:517809-518060 1.0000 100 chrIV:220982-222356 1.0000 100 chrXIII:768195-768417 1.0000 100 chrVII:930881-931137 1.0000 100 chrXIII:759890-763107 1.0000 100 chrV:53572-54074 1.0000 100 chrXV:571665-572150 1.0000 100 chrIV:194287-197424 1.0000 100 chrVIII:74991-76299 1.0000 100 chrII:75753-80018 1.0000 100 chrXI:379511-379926 1.0000 100 chrXI:490733-491211 1.0000 100 chrXII:897746-899740 1.0000 100 chrVII:56547-59082 1.0000 100 chrIV:579089-580733 1.0000 100 chrXI:488226-488983 1.0000 100 chrVII:255153-255666 1.0000 100 chrI:87668-91587 1.0000 100 chrXV:539751-543937 1.0000 100 chrVII:881251-883945 1.0000 100 chrX:424302-424402 1.0000 100 chrXV:758942-759487 1.0000 100 chrII:578820-581207 1.0000 100 chrIX:118800-122158 1.0000 100 chrVII:345888-346635 1.0000 100 chrIV:1236500-1238484 1.0000 100 chrIV:526935-527567 1.0000 100 chrXV:900079-901190 1.0000 100 chrII:604176-606042 1.0000 100 chrXII:734610-737299 1.0000 100 chrXII:122081-123384 1.0000 100 chrXIV:253161-254165 1.0000 100 chrXIII:554293-556441 1.0000 100 chrX:378189-378289 1.0000 100 chrXVI:376152-377386 1.0000 100 chrIX:393209-393676 1.0000 100 chrXVI:718428-719394 1.0000 100 chrIV:1462290-1465192 1.0000 100 chrXVI:879268-880516 1.0000 100 chrV:176900-177388 1.0000 100 chrXIV:508415-509584 1.0000 100 chrIII:308670-308925 1.0000 100 chrXI:513227-513504 1.0000 100 chrIII:295375-295896 1.0000 100 chrXIV:88058-89742 1.0000 100 chrVII:531469-531771 1.0000 100 chrIX:212776-215294 1.0000 100 chrVII:260410-261741 1.0000 100 chrX:542793-542893 1.0000 100 chrVIII:394015-395987 1.0000 100 chrXV:624353-624766 1.0000 100 chrIX:96886-97542 1.0000 100 chrIV:1175606-1176265 1.0000 100 chrXIV:568059-568502 1.0000 100 chrVI:92780-94225 1.0000 100 chrIV:176878-178406 1.0000 100 chrII:89667-89941 1.0000 100 chrIV:1466133-1468358 1.0000 100 chrVI:75307-76344 1.0000 100 chrIV:1169905-1170377 1.0000 100 chrVII:277510-279909 1.0000 100 chrXV:1027765-1031166 1.0000 100 chrI:24656-25598 1.0000 100 chrIV:170059-170256 1.0000 100 chrXVI:64841-66321 1.0000 100 chrX:156307-156407 1.0000 100 chrXV:904858-906324 1.0000 100 chrVII:110408-110776 1.0000 100 chrV:354802-355199 1.0000 100 chrXIV:289656-292264 1.0000 100 chrXVI:208629-210435 1.0000 100 chrVII:254192-254711 1.0000 100 chrII:59570-60445 1.0000 100 chrXIV:108074-109252 1.0000 100 chrIV:45157-47218 1.0000 100 chrVIII:274181-276320 1.0000 100 chrXIII:23928-25554 1.0000 100 chrXV:464305-464583 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--THP2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--THP2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--THP2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.305 C 0.195 G 0.195 T 0.305 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--THP2/background): A 0.309 C 0.191 G 0.191 T 0.309 ******************************************************************************** ******************************************************************************** MOTIF GCYCHCDMBSGGRRTCGAACCSVKGAYCT MEME-1 width = 29 sites = 45 llr = 912 E-value = 2.1e-158 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCYCHCDMBSGGRRTCGAACCSVKGAYCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 12112244::3:45:::a9::13:37:1: pos.-specific C :55635:434:::1:8:::a7641::763 probability G 72121231467a62::a::::4347::11 matrix T 2:42413:3::::1a2::1:2::4:2327 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 * *** * Relative 1.4 * ****** * Entropy 1.2 * * ******** * * (29.2 bits) 1.0 * **** ******** * * 0.7 * * ***** ******** ***** 0.5 **** * ****** *************** 0.2 ***************************** 0.0 ----------------------------- Multilevel GCCCTCACGGGGGATCGAACCCCGGACCT consensus ATGCGTACCA AG TGATATT C sequence G A G T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYCHCDMBSGGRRTCGAACCSVKGAYCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIV:1351902-1353060 + 36 1.00e-13 AAAAAAGATA GCCCTGTAGGGGGCTCGAACCCCTAACCT TATGATTAAG chrVII:185501-185889 + 70 1.00e-13 AAAAAAGATA GCCCTGTAGGGGGCTCGAACCCCTAACCT TA chrXVI:581878-582315 - 59 1.00e-13 AAAAAAGAAA GCCCTGTAGGGGGCTCGAACCCCTAACCT TATGATTAAG chrX:414796-414896 - 23 1.00e-13 AAAAATATTA GCCCTGTAGGGGGCTCGAACCCCTAACCT TATGATTAAG chrXIII:480416-480827 + 51 1.00e-13 AAAAAAAGAA GCCCTGTAGGGGGCTCGAACCCCTAACCT TATGATTAAG chrV:443119-443330 + 29 4.44e-13 AAAAAAATAT GGTCTCTAGCGGGATCGAACCGCTGATCC CCGCGTTATT chrXII:1051953-1052201 + 45 4.44e-13 AAAAAATAAT GGTCTCTAGCGGGATCGAACCGCTGATCC CCGCGTTATT chrV:550942-551586 + 72 4.44e-13 CAAAAAAATT GGTCTCTAGCGGGATCGAACCGCTGATCC chrII:197307-197817 - 26 4.44e-13 GCAAAAAAAT GGTCTCTAGCGGGATCGAACCGCTGATCC CCGCGTTATT chrV:311755-312287 + 53 1.84e-11 AGATTTCATT GGACGCAACCGGAATCGAACCGATGACCT CTTCCTTGCA chrXII:214725-215051 + 46 1.84e-11 AAAAATAAAT GGACGCAACCGGAATCGAACCGATGACCT CTTCCTTGCA chrXVI:860154-860652 - 67 3.32e-11 AATCT GCGCAAGCCCGGAATCGAACCGGGGGCCC AACGATGGCA chrVIII:475526-475892 + 48 3.32e-11 ATGTTAAAAT GTTCCAACCGAGGATCGAACTCGGGACCT TTGCCGTGTG chrVI:180713-181243 + 47 3.32e-11 AAAAAGGACT GCGCAAGCCCGGAATCGAACCGGGGGCCC AACGATGGCA chrX:355212-355312 - 3 5.87e-11 GAAACAAAGC ACTCACGATGGGGGTCGAACCCATAATCT TC chrXIII:131612-132069 + 36 5.87e-11 GAAACAAAGC ACTCACGATGGGGGTCGAACCCATAATCT TCTGATTAGA chrIV:568722-569210 - 8 5.87e-11 GAAACAAAGC ACTCACGATGGGGGTCGAACCCATAATCT TCTGATT chrII:326595-327063 + 14 9.10e-11 TAAAGAGTTT GATCCAACCGAGGTTCGAACTCGGGATCT TCGCCGTGTA chrV:354802-355199 - 26 1.25e-10 AAAAAAGTAC TCCGATACGGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrV:176900-177388 - 47 1.25e-10 AAAAAAGTAC TCCGATACGGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrXIII:290608-291112 - 33 1.25e-10 AAAAGAAAAC TCCGATACGGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrVII:541725-542130 - 15 1.25e-10 AAAAGAACAC TCCGATACGGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrXVI:769001-769462 + 27 1.25e-10 AGTAAAGAAC TCCTCATAGGGGGCTCGAACCCCTGACAT TTCGGTATCC chrXI:379511-379926 - 56 1.39e-10 AAAATTAATT GATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXIII:420383-420843 + 26 1.39e-10 AGATAAAAAT GATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXI:307926-308411 + 27 1.39e-10 AAAAAAAATT GATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXIII:372195-372752 + 23 1.39e-10 CTAAAAAAAT GATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXIV:96034-96453 + 49 2.32e-10 CAAAAAATTT GAGCGGTACGAGAATCGAACCCGTGTCCC CACCTTGGAA chrIX:325572-326059 - 26 5.05e-10 AAAAAAAATT GCTTCCAATCGGATTTGAACCGATGATCT CCACATTACT chrVI:137290-137756 + 14 5.54e-10 ATAAAAAAAC GACCCCAGTGAGGGTTGAACTCACGATCT TGCGATTAAC chrXIV:632513-632821 - 26 5.54e-10 GAAAAAAAAC GACCCCAGTGAGGGTTGAACTCACGATCT TGCGATTAAC chrVII:730976-731389 - 49 5.54e-10 AGCAAAAAAC GACCCCAGTGAGGGTTGAACTCACGATCT TGCGATTAAC chrV:130824-131342 + 50 6.08e-10 GAAAAAAATA GGTCTTACCCGGATTCGAACCGGGGTTGT TCGGATCAAA chrX:422688-422788 - 55 8.76e-10 AAGAAAATGT GCTCCAGGGGAGGTTCGAACTCTCGACCT TCAGATTATG chrXI:513227-513504 + 18 1.48e-09 ATAAAAAATC TCCGCGACGGGGAATTGAACCCCGATCTG GCACGCGACA chrIX:336105-336644 + 26 1.48e-09 TAAAAAAATC TCCGCGACGGGGAATTGAACCCCGATCTG GCACGCGACA chrXII:426934-427448 - 33 1.48e-09 AAAAAAATTC TCCGCGACGGGGAATTGAACCCCGATCTG GCACGCGACA chrIV:1095119-1095670 + 27 8.48e-09 AAATAAAAAT GCGAACTCTGTGGATCGAACACAGGACCT CCAGATATCT chrXIII:320987-321405 + 2 1.05e-08 T GGACGAGTCCGGAATCGAACCGGAGACCT CTCCCATGCT chrXVI:744096-744537 - 60 1.30e-08 AAAAAATTTT GCCACCTGTCAGAATTGAACTAACGACCT TTGCATTACA chrXV:710089-710494 - 2 1.83e-08 TAAAAAAATT AGCGCCGCTCGGTTTCGATCCGAGGACAT C chrX:517665-517765 + 5 1.83e-08 GCTT AGCGCCGCTCGGTTTCGATCCGAGGACAT CAGGGTTATG chrVIII:62623-62946 - 63 3.30e-08 AAAATAAAT GCCATCTCCTAGAATCGAACCAGGGTTTC ATCGGCCACA chrX:354175-354275 - 1 7.66e-08 TTAAAAAAAT CTCCCGGGGGCGAGTCGAACGCCCGATCT chrXVI:730839-731354 - 21 3.63e-07 GCGCGCTAAG GACTTCTATGGCGAGCGATCCAATATCCT TCCACGATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYCHCDMBSGGRRTCGAACCSVKGAYCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1351902-1353060 1e-13 35_[+1]_36 chrVII:185501-185889 1e-13 69_[+1]_2 chrXVI:581878-582315 1e-13 58_[-1]_13 chrX:414796-414896 1e-13 22_[-1]_49 chrXIII:480416-480827 1e-13 50_[+1]_21 chrV:443119-443330 4.4e-13 28_[+1]_43 chrXII:1051953-1052201 4.4e-13 44_[+1]_27 chrV:550942-551586 4.4e-13 71_[+1] chrII:197307-197817 4.4e-13 25_[-1]_46 chrV:311755-312287 1.8e-11 52_[+1]_19 chrXII:214725-215051 1.8e-11 45_[+1]_26 chrXVI:860154-860652 3.3e-11 66_[-1]_5 chrVIII:475526-475892 3.3e-11 47_[+1]_24 chrVI:180713-181243 3.3e-11 46_[+1]_25 chrX:355212-355312 5.9e-11 2_[-1]_69 chrXIII:131612-132069 5.9e-11 35_[+1]_36 chrIV:568722-569210 5.9e-11 7_[-1]_64 chrII:326595-327063 9.1e-11 13_[+1]_58 chrV:354802-355199 1.3e-10 25_[-1]_46 chrV:176900-177388 1.3e-10 46_[-1]_25 chrXIII:290608-291112 1.3e-10 32_[-1]_39 chrVII:541725-542130 1.3e-10 14_[-1]_57 chrXVI:769001-769462 1.3e-10 26_[+1]_45 chrXI:379511-379926 1.4e-10 55_[-1]_16 chrXIII:420383-420843 1.4e-10 25_[+1]_46 chrXI:307926-308411 1.4e-10 26_[+1]_45 chrXIII:372195-372752 1.4e-10 22_[+1]_49 chrXIV:96034-96453 2.3e-10 48_[+1]_23 chrIX:325572-326059 5e-10 25_[-1]_46 chrVI:137290-137756 5.5e-10 13_[+1]_58 chrXIV:632513-632821 5.5e-10 25_[-1]_46 chrVII:730976-731389 5.5e-10 48_[-1]_23 chrV:130824-131342 6.1e-10 49_[+1]_22 chrX:422688-422788 8.8e-10 54_[-1]_17 chrXI:513227-513504 1.5e-09 17_[+1]_54 chrIX:336105-336644 1.5e-09 25_[+1]_46 chrXII:426934-427448 1.5e-09 32_[-1]_39 chrIV:1095119-1095670 8.5e-09 26_[+1]_45 chrXIII:320987-321405 1.1e-08 1_[+1]_70 chrXVI:744096-744537 1.3e-08 59_[-1]_12 chrXV:710089-710494 1.8e-08 1_[-1]_70 chrX:517665-517765 1.8e-08 4_[+1]_67 chrVIII:62623-62946 3.3e-08 62_[-1]_9 chrX:354175-354275 7.7e-08 [-1]_71 chrXVI:730839-731354 3.6e-07 20_[-1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYCHCDMBSGGRRTCGAACCSVKGAYCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCYCHCDMBSGGRRTCGAACCSVKGAYCT width=29 seqs=45 chrIV:1351902-1353060 ( 36) GCCCTGTAGGGGGCTCGAACCCCTAACCT 1 chrVII:185501-185889 ( 70) GCCCTGTAGGGGGCTCGAACCCCTAACCT 1 chrXVI:581878-582315 ( 59) GCCCTGTAGGGGGCTCGAACCCCTAACCT 1 chrX:414796-414896 ( 23) GCCCTGTAGGGGGCTCGAACCCCTAACCT 1 chrXIII:480416-480827 ( 51) GCCCTGTAGGGGGCTCGAACCCCTAACCT 1 chrV:443119-443330 ( 29) GGTCTCTAGCGGGATCGAACCGCTGATCC 1 chrXII:1051953-1052201 ( 45) GGTCTCTAGCGGGATCGAACCGCTGATCC 1 chrV:550942-551586 ( 72) GGTCTCTAGCGGGATCGAACCGCTGATCC 1 chrII:197307-197817 ( 26) GGTCTCTAGCGGGATCGAACCGCTGATCC 1 chrV:311755-312287 ( 53) GGACGCAACCGGAATCGAACCGATGACCT 1 chrXII:214725-215051 ( 46) GGACGCAACCGGAATCGAACCGATGACCT 1 chrXVI:860154-860652 ( 67) GCGCAAGCCCGGAATCGAACCGGGGGCCC 1 chrVIII:475526-475892 ( 48) GTTCCAACCGAGGATCGAACTCGGGACCT 1 chrVI:180713-181243 ( 47) GCGCAAGCCCGGAATCGAACCGGGGGCCC 1 chrX:355212-355312 ( 3) ACTCACGATGGGGGTCGAACCCATAATCT 1 chrXIII:131612-132069 ( 36) ACTCACGATGGGGGTCGAACCCATAATCT 1 chrIV:568722-569210 ( 8) ACTCACGATGGGGGTCGAACCCATAATCT 1 chrII:326595-327063 ( 14) GATCCAACCGAGGTTCGAACTCGGGATCT 1 chrV:354802-355199 ( 26) TCCGATACGGGGAGTCGAACCCCGGTCTC 1 chrV:176900-177388 ( 47) TCCGATACGGGGAGTCGAACCCCGGTCTC 1 chrXIII:290608-291112 ( 33) TCCGATACGGGGAGTCGAACCCCGGTCTC 1 chrVII:541725-542130 ( 15) TCCGATACGGGGAGTCGAACCCCGGTCTC 1 chrXVI:769001-769462 ( 27) TCCTCATAGGGGGCTCGAACCCCTGACAT 1 chrXI:379511-379926 ( 56) GATTTCGCCCAGGATCGAACTGGGGACGT 1 chrXIII:420383-420843 ( 26) GATTTCGCCCAGGATCGAACTGGGGACGT 1 chrXI:307926-308411 ( 27) GATTTCGCCCAGGATCGAACTGGGGACGT 1 chrXIII:372195-372752 ( 23) GATTTCGCCCAGGATCGAACTGGGGACGT 1 chrXIV:96034-96453 ( 49) GAGCGGTACGAGAATCGAACCCGTGTCCC 1 chrIX:325572-326059 ( 26) GCTTCCAATCGGATTTGAACCGATGATCT 1 chrVI:137290-137756 ( 14) GACCCCAGTGAGGGTTGAACTCACGATCT 1 chrXIV:632513-632821 ( 26) GACCCCAGTGAGGGTTGAACTCACGATCT 1 chrVII:730976-731389 ( 49) GACCCCAGTGAGGGTTGAACTCACGATCT 1 chrV:130824-131342 ( 50) GGTCTTACCCGGATTCGAACCGGGGTTGT 1 chrX:422688-422788 ( 55) GCTCCAGGGGAGGTTCGAACTCTCGACCT 1 chrXI:513227-513504 ( 18) TCCGCGACGGGGAATTGAACCCCGATCTG 1 chrIX:336105-336644 ( 26) TCCGCGACGGGGAATTGAACCCCGATCTG 1 chrXII:426934-427448 ( 33) TCCGCGACGGGGAATTGAACCCCGATCTG 1 chrIV:1095119-1095670 ( 27) GCGAACTCTGTGGATCGAACACAGGACCT 1 chrXIII:320987-321405 ( 2) GGACGAGTCCGGAATCGAACCGGAGACCT 1 chrXVI:744096-744537 ( 60) GCCACCTGTCAGAATTGAACTAACGACCT 1 chrXV:710089-710494 ( 2) AGCGCCGCTCGGTTTCGATCCGAGGACAT 1 chrX:517665-517765 ( 5) AGCGCCGCTCGGTTTCGATCCGAGGACAT 1 chrVIII:62623-62946 ( 63) GCCATCTCCTAGAATCGAACCAGGGTTTC 1 chrX:354175-354275 ( 1) CTCCCGGGGGCGAGTCGAACGCCCGATCT 1 chrXVI:730839-731354 ( 21) GACTTCTATGGCGAGCGATCCAATATCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYCHCDMBSGGRRTCGAACCSVKGAYCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.2849 E= 2.1e-158 -148 -310 185 -80 -48 142 22 -280 -221 136 -110 20 -221 160 7 -99 -48 81 -110 20 -99 142 22 -148 20 -1214 71 11 37 122 -52 -380 -1214 71 115 -21 -1214 107 160 -380 -10 -310 181 -380 -1214 -310 236 -1214 37 -1214 154 -280 66 -52 36 -121 -1214 -1214 -310 166 -1214 211 -1214 -80 -1214 -1214 239 -1214 169 -1214 -1214 -1214 159 -1214 -1214 -221 -1214 239 -1214 -1214 -380 190 -310 -34 -221 154 99 -1214 1 107 48 -380 -380 -52 122 37 -21 -1214 194 -1214 120 -1214 -210 -34 -1214 181 -1214 11 -221 176 -78 -80 -1214 48 -151 111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYCHCDMBSGGRRTCGAACCSVKGAYCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 45 E= 2.1e-158 0.111111 0.022222 0.688889 0.177778 0.222222 0.511111 0.222222 0.044444 0.066667 0.488889 0.088889 0.355556 0.066667 0.577778 0.200000 0.155556 0.222222 0.333333 0.088889 0.355556 0.155556 0.511111 0.222222 0.111111 0.355556 0.000000 0.311111 0.333333 0.400000 0.444444 0.133333 0.022222 0.000000 0.311111 0.422222 0.266667 0.000000 0.400000 0.577778 0.022222 0.288889 0.022222 0.666667 0.022222 0.000000 0.022222 0.977778 0.000000 0.400000 0.000000 0.555556 0.044444 0.488889 0.133333 0.244444 0.133333 0.000000 0.000000 0.022222 0.977778 0.000000 0.822222 0.000000 0.177778 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.933333 0.000000 0.000000 0.066667 0.000000 1.000000 0.000000 0.000000 0.022222 0.711111 0.022222 0.244444 0.066667 0.555556 0.377778 0.000000 0.311111 0.400000 0.266667 0.022222 0.022222 0.133333 0.444444 0.400000 0.266667 0.000000 0.733333 0.000000 0.711111 0.000000 0.044444 0.244444 0.000000 0.666667 0.000000 0.333333 0.066667 0.644444 0.111111 0.177778 0.000000 0.266667 0.066667 0.666667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYCHCDMBSGGRRTCGAACCSVKGAYCT MEME-1 regular expression -------------------------------------------------------------------------------- G[CAG][CT][CG][TCA][CG][ATG][CA][GCT][GC][GA]G[GA][AG]TCGAAC[CT][CG][CAG][GT][GA][AT][CT]C[TC] -------------------------------------------------------------------------------- Time 354.25 secs. ******************************************************************************** ******************************************************************************** MOTIF VCSVHSVCTYWWMCCACTRRRCCAHSVVRS MEME-2 width = 30 sites = 57 llr = 889 E-value = 2.1e-107 ******************************************************************************** -------------------------------------------------------------------------------- Motif VCSVHSVCTYWWMCCACTRRRCCAHSVVRS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2113212111455:2a::443::a323421 pos.-specific C 4533344633214a6:8:12:a7:532324 probability G 3253153211:2::2:::357::::44343 matrix T 22113:1256431:::2a1:::3:211112 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * ** * * Relative 1.4 * *** *** Entropy 1.2 * *** **** (22.5 bits) 1.0 * * *** **** 0.7 * * ****** ***** 0.5 * *** * ****** ****** * 0.2 **** ************************* 0.0 ------------------------------ Multilevel CCGATGCCTTTAACCACTAGGCCACGGAGC consensus GTCCCCG CCATC A GAA T ACACAG sequence GA A T GC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCSVHSVCTYWWMCCACTRRRCCAHSVVRS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrV:443119-443330 + 71 2.41e-11 CGTTATTAGC ACGGTGCCTTAACCAACTGGGCCAAGAGAC chrVII:738759-739472 - 58 2.41e-11 CGTTATTAGC ACGGTGCCTTAACCAACTGGGCCAAGAGAC CTATTTTTTT chrX:424302-424402 + 30 1.14e-10 GATCTTAAGT CTGCCGCCTTAGACCACTCGGCCAACCCTC CATCTTATTT chrXII:962807-963277 + 33 1.14e-10 GATCTTAAGT CTGCCGCCTTAGACCACTCGGCCAACCCTC CGTCGATAAT chrXI:84021-84366 - 66 1.14e-10 TAAGT CTGCCGCCTTAGACCACTCGGCCAACCCTC CATACAAATT chrXI:74463-74826 - 31 3.44e-10 GATTAACAGT CGCACGCCTTAACCAACTTGGCCATGGAGT CTAATTGCTA chrVI:137290-137756 + 56 3.44e-10 GATTAACAGT CGCACGCCTTAACCAACTTGGCCATGGAGT CAGTCACTTT chrIII:127552-127868 - 57 3.44e-10 GATTAACAGT CGCACGCCTTAACCAACTTGGCCATGGAGT CATTTTATCT chrIV:359381-359752 - 62 3.44e-10 GCTTAAAAG CCGAACGCTCTACCAACTGAGCTAACAAGG ATGAGTTCTT chrVII:730976-731389 - 6 3.44e-10 GATTAACAGT CGCACGCCTTAACCAACTTGGCCATGGAGT CTTTT chrXV:228098-228527 - 70 3.44e-10 T CGCACGCCTTAACCAACTTGGCCATGGAGT CTAATATTTT chrIV:1150691-1151165 + 33 3.44e-10 GGAAATAGCA GGCATCGCCTTAACCACTCGGCCACTGGGA CTGAAACACT chrVII:115271-115699 - 54 3.44e-10 CGCTTAAAAG CCGAACGCTCTACCAACTGAGCTAACAAGG ATGAGTTCTT chrIII:149718-150143 - 41 9.54e-10 AGGGTTATGA GCCCTGCGCGCTTCCACTGCGCCACGGCGC TCAACATTAC chrX:517665-517765 + 45 9.54e-10 AGGGTTATGA GCCCTGCGCGCTTCCACTGCGCCACGGCGC TTAACTTTTA chrXVI:338759-339112 + 4 9.54e-10 TGA GCCCTGCGCGCTTCCACTGCGCCACGGCGC TGCTAAATCA chrX:378189-378289 - 42 2.46e-09 GCGTGTTAAG CAGATGCCATAACCGACTAGACCACGAAAC CTATTAATTT chrXI:379511-379926 - 13 2.46e-09 GCGTGTTAAG CAGATGCCATAACCGACTAGACCACGAAAC CTATTAATCT chrXIII:420383-420843 + 68 2.46e-09 GCGTGTTAAG CAGATGCCATAACCGACTAGACCACGAAAC CTG chrXI:307926-308411 + 69 2.46e-09 GCGTGTTAAG CAGATGCCATAACCGACTAGACCACGAAAC CA chrXIII:372195-372752 + 65 2.46e-09 GCGTGTTAAG CAGATGCCATAACCGACTAGACCACGAAAC CAGGTT chrXIII:320987-321405 + 43 3.61e-09 CCCATGCTAA GGGAGCGCGCTACCGACTACGCCACACGCC CGATTTGTAT chrXII:656846-657175 + 16 3.61e-09 CCCATGCTAA GGGAGCGCGCTACCGACTACGCCACACGCC CAATTTTCTT chrVII:774156-774544 - 50 3.61e-09 CCCATGCTAA GGGAGCGCGCTACCGACTACGCCACACGCC CAATTAATTG chrXVI:689374-689808 - 25 8.46e-09 AGATTTCAAG TCTGTCGCCTTAACCACTCGGCCATAGTGC CCAAAATAAT chrXVI:744096-744537 - 19 1.34e-08 TGCATTACAA GTGCAACGCTCTACCACTAAGCTAAGGAGG CTTTTACACT chrVII:1004084-1004379 - 36 1.34e-08 TGCATTACAA GTGCAACGCTCTACCACTAAGCTAAGGAGG CAAACCCTTG chrXI:490733-491211 - 47 2.08e-08 TGGTTCGTAG CCAGACGCCGTGACCATTGGGCCACGAGGA ACAAGAATTA chrII:326595-327063 + 56 2.58e-08 CCGTGTAAAG GCGACGTCTTGAACCACTGGACCATTGGAC CCGGAACTCG chrXII:605244-605595 + 33 2.87e-08 TTGCTATAAG CACGAAGCTCTAACCACTGAGCTACACGAG CATTTTCGAA chrIV:437564-437975 - 54 3.18e-08 AGATTTCTAA TCTTTCGCCTTAACCACTCGGCCAAGTTGC CTTACTAATG chrXIII:259055-259461 + 1 3.18e-08 . TCTTTCGCCTTAACCACTCGGCCAAGTTGC CATACTAACT chrXIII:504705-505163 - 12 3.90e-08 TTTCTTGAAT CAGGCGCCTTAGACCGCTCGGCCAAACAAC CACTTATCTG chrXV:464305-464583 - 57 5.81e-08 AGTCGCCCAA AGCGAGAATCATACCACTAGACCACACGCC CTTGTTAACT chrVII:930881-931137 + 34 6.41e-08 AACGATGGCA ACGTTGGATTTTACCACTAAACCACTTGCG CTTACTGATT chrXVI:860154-860652 - 27 6.41e-08 AACGATGGCA ACGTTGGATTTTACCACTAAACCACTTGCG CTTGTTATTT chrXV:226599-226802 + 1 6.41e-08 . ACGTTGGATTTTACCACTAAACCACTTGCG CTGAATTTCT chrXVI:572024-572485 - 66 6.41e-08 TGGCA ACGTTGGATTTTACCACTAAACCACTTGCG CGAAGTATTG chrVII:531469-531771 - 41 7.76e-08 CACGCGACAA GCGCCCATTCTGACCATTAAACTATCACGG AAGTAACTCG chrXI:513227-513504 + 58 7.76e-08 CACGCGACAA GCGCCCATTCTGACCATTAAACTATCACGG AACGTTATTT chrX:355212-355312 - 44 7.76e-08 CACGCGACAA GCGCCCATTCTGACCATTAAACTATCACGG AAGAAACAAA chrIX:336105-336644 + 66 7.76e-08 CACGCGACAA GCGCCCATTCTGACCATTAAACTATCACGG ATTTG chrIV:568722-569210 - 49 7.76e-08 CACGCGACAA GCGCCCATTCTGACCATTAAACTATCACGG AAGAAACAAA chrX:542793-542893 + 44 4.63e-07 AATTACAGTC TTGCGCCTTAAACCAACTTGGCTACCGAGA GTATTTAATT chrVI:167257-167634 - 43 4.63e-07 AATTACAGTC TTGCGCCTTAAACCAACTTGGCTACCGAGA GTCGTTTTTG chrII:36259-36551 - 44 4.63e-07 TTTTCTTCAG TCTGGCGCTCTCCCAACTGAGCTAAATCCG CTTACAACTA chrXIII:352109-352457 - 48 4.63e-07 ATTTCTTCAG TCTGGCGCTCTCCCAACTGAGCTAAATCCG CTTATATTCA chrX:422688-422788 - 13 5.00e-07 AGATTATGAG ACTGACGCTCTTCCTACTGAGCTACTGAAG CATACAAAGG chrVII:287243-287664 + 22 5.39e-07 TTTAATTGGA GTCGAAAGCTCTACCATTGAGCCACCGCTT CATCTTGAAA chrX:415732-415832 + 60 5.39e-07 TTTAATTGGA GTCGAAAGCTCTACCATTGAGCCACCGCTT CAACTTTTGT chrXI:302705-303193 - 20 5.39e-07 TTTAATTGGA GTCGAAAGCTCTACCATTGAGCCACCGCTT CATCTTGGAA chrXVI:581878-582315 - 17 5.80e-07 TGATTAAGAG TCATACGCGCTACCGATTGCGCCAACAAGG CTCTTTTGTT chrXII:625171-625673 - 23 1.09e-06 TTCCATTGTT CCCCAAATATTCCCCACTACGCCAAGAATA GAACACCTGG chrIII:123502-123778 + 28 1.33e-06 CCGCACCCTA AGCGAGAATCATACCTCTAGACCACACGCC CTCCTTTGAA chrXVI:775667-776013 + 16 2.78e-06 CAGATTTGCA ATCTGCTGCGCTACCACTGCGCCATACGAG CTTTTGAATT chrI:205813-206773 + 7 3.11e-06 GAAGGT CTAATCAGCACCACCACTGAACCATGGACT GGCACTTTCA chrXV:619623-621510 - 25 4.09e-06 TACATCAGCT TCTGCGTTGTAAACAACTTCACCACGAAAA TGTTTCTTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCSVHSVCTYWWMCCACTRRRCCAHSVVRS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:443119-443330 2.4e-11 70_[+2] chrVII:738759-739472 2.4e-11 57_[-2]_13 chrX:424302-424402 1.1e-10 29_[+2]_41 chrXII:962807-963277 1.1e-10 32_[+2]_38 chrXI:84021-84366 1.1e-10 65_[-2]_5 chrXI:74463-74826 3.4e-10 30_[-2]_40 chrVI:137290-137756 3.4e-10 55_[+2]_15 chrIII:127552-127868 3.4e-10 56_[-2]_14 chrIV:359381-359752 3.4e-10 61_[-2]_9 chrVII:730976-731389 3.4e-10 5_[-2]_65 chrXV:228098-228527 3.4e-10 69_[-2]_1 chrIV:1150691-1151165 3.4e-10 32_[+2]_38 chrVII:115271-115699 3.4e-10 53_[-2]_17 chrIII:149718-150143 9.5e-10 40_[-2]_30 chrX:517665-517765 9.5e-10 44_[+2]_26 chrXVI:338759-339112 9.5e-10 3_[+2]_67 chrX:378189-378289 2.5e-09 41_[-2]_29 chrXI:379511-379926 2.5e-09 12_[-2]_58 chrXIII:420383-420843 2.5e-09 67_[+2]_3 chrXI:307926-308411 2.5e-09 68_[+2]_2 chrXIII:372195-372752 2.5e-09 64_[+2]_6 chrXIII:320987-321405 3.6e-09 42_[+2]_28 chrXII:656846-657175 3.6e-09 15_[+2]_55 chrVII:774156-774544 3.6e-09 49_[-2]_21 chrXVI:689374-689808 8.5e-09 24_[-2]_46 chrXVI:744096-744537 1.3e-08 18_[-2]_52 chrVII:1004084-1004379 1.3e-08 35_[-2]_35 chrXI:490733-491211 2.1e-08 46_[-2]_24 chrII:326595-327063 2.6e-08 55_[+2]_15 chrXII:605244-605595 2.9e-08 32_[+2]_38 chrIV:437564-437975 3.2e-08 53_[-2]_17 chrXIII:259055-259461 3.2e-08 [+2]_70 chrXIII:504705-505163 3.9e-08 11_[-2]_59 chrXV:464305-464583 5.8e-08 56_[-2]_14 chrVII:930881-931137 6.4e-08 33_[+2]_37 chrXVI:860154-860652 6.4e-08 26_[-2]_44 chrXV:226599-226802 6.4e-08 [+2]_70 chrXVI:572024-572485 6.4e-08 65_[-2]_5 chrVII:531469-531771 7.8e-08 40_[-2]_30 chrXI:513227-513504 7.8e-08 57_[+2]_13 chrX:355212-355312 7.8e-08 43_[-2]_27 chrIX:336105-336644 7.8e-08 65_[+2]_5 chrIV:568722-569210 7.8e-08 48_[-2]_22 chrX:542793-542893 4.6e-07 43_[+2]_27 chrVI:167257-167634 4.6e-07 42_[-2]_28 chrII:36259-36551 4.6e-07 43_[-2]_27 chrXIII:352109-352457 4.6e-07 47_[-2]_23 chrX:422688-422788 5e-07 12_[-2]_58 chrVII:287243-287664 5.4e-07 21_[+2]_49 chrX:415732-415832 5.4e-07 59_[+2]_11 chrXI:302705-303193 5.4e-07 19_[-2]_51 chrXVI:581878-582315 5.8e-07 16_[-2]_54 chrXII:625171-625673 1.1e-06 22_[-2]_48 chrIII:123502-123778 1.3e-06 27_[+2]_43 chrXVI:775667-776013 2.8e-06 15_[+2]_55 chrI:205813-206773 3.1e-06 6_[+2]_64 chrXV:619623-621510 4.1e-06 24_[-2]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCSVHSVCTYWWMCCACTRRRCCAHSVVRS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VCSVHSVCTYWWMCCACTRRRCCAHSVVRS width=30 seqs=57 chrV:443119-443330 ( 71) ACGGTGCCTTAACCAACTGGGCCAAGAGAC 1 chrVII:738759-739472 ( 58) ACGGTGCCTTAACCAACTGGGCCAAGAGAC 1 chrX:424302-424402 ( 30) CTGCCGCCTTAGACCACTCGGCCAACCCTC 1 chrXII:962807-963277 ( 33) CTGCCGCCTTAGACCACTCGGCCAACCCTC 1 chrXI:84021-84366 ( 66) CTGCCGCCTTAGACCACTCGGCCAACCCTC 1 chrXI:74463-74826 ( 31) CGCACGCCTTAACCAACTTGGCCATGGAGT 1 chrVI:137290-137756 ( 56) CGCACGCCTTAACCAACTTGGCCATGGAGT 1 chrIII:127552-127868 ( 57) CGCACGCCTTAACCAACTTGGCCATGGAGT 1 chrIV:359381-359752 ( 62) CCGAACGCTCTACCAACTGAGCTAACAAGG 1 chrVII:730976-731389 ( 6) CGCACGCCTTAACCAACTTGGCCATGGAGT 1 chrXV:228098-228527 ( 70) CGCACGCCTTAACCAACTTGGCCATGGAGT 1 chrIV:1150691-1151165 ( 33) GGCATCGCCTTAACCACTCGGCCACTGGGA 1 chrVII:115271-115699 ( 54) CCGAACGCTCTACCAACTGAGCTAACAAGG 1 chrIII:149718-150143 ( 41) GCCCTGCGCGCTTCCACTGCGCCACGGCGC 1 chrX:517665-517765 ( 45) GCCCTGCGCGCTTCCACTGCGCCACGGCGC 1 chrXVI:338759-339112 ( 4) GCCCTGCGCGCTTCCACTGCGCCACGGCGC 1 chrX:378189-378289 ( 42) CAGATGCCATAACCGACTAGACCACGAAAC 1 chrXI:379511-379926 ( 13) CAGATGCCATAACCGACTAGACCACGAAAC 1 chrXIII:420383-420843 ( 68) CAGATGCCATAACCGACTAGACCACGAAAC 1 chrXI:307926-308411 ( 69) CAGATGCCATAACCGACTAGACCACGAAAC 1 chrXIII:372195-372752 ( 65) CAGATGCCATAACCGACTAGACCACGAAAC 1 chrXIII:320987-321405 ( 43) GGGAGCGCGCTACCGACTACGCCACACGCC 1 chrXII:656846-657175 ( 16) GGGAGCGCGCTACCGACTACGCCACACGCC 1 chrVII:774156-774544 ( 50) GGGAGCGCGCTACCGACTACGCCACACGCC 1 chrXVI:689374-689808 ( 25) TCTGTCGCCTTAACCACTCGGCCATAGTGC 1 chrXVI:744096-744537 ( 19) GTGCAACGCTCTACCACTAAGCTAAGGAGG 1 chrVII:1004084-1004379 ( 36) GTGCAACGCTCTACCACTAAGCTAAGGAGG 1 chrXI:490733-491211 ( 47) CCAGACGCCGTGACCATTGGGCCACGAGGA 1 chrII:326595-327063 ( 56) GCGACGTCTTGAACCACTGGACCATTGGAC 1 chrXII:605244-605595 ( 33) CACGAAGCTCTAACCACTGAGCTACACGAG 1 chrIV:437564-437975 ( 54) TCTTTCGCCTTAACCACTCGGCCAAGTTGC 1 chrXIII:259055-259461 ( 1) TCTTTCGCCTTAACCACTCGGCCAAGTTGC 1 chrXIII:504705-505163 ( 12) CAGGCGCCTTAGACCGCTCGGCCAAACAAC 1 chrXV:464305-464583 ( 57) AGCGAGAATCATACCACTAGACCACACGCC 1 chrVII:930881-931137 ( 34) ACGTTGGATTTTACCACTAAACCACTTGCG 1 chrXVI:860154-860652 ( 27) ACGTTGGATTTTACCACTAAACCACTTGCG 1 chrXV:226599-226802 ( 1) ACGTTGGATTTTACCACTAAACCACTTGCG 1 chrXVI:572024-572485 ( 66) ACGTTGGATTTTACCACTAAACCACTTGCG 1 chrVII:531469-531771 ( 41) GCGCCCATTCTGACCATTAAACTATCACGG 1 chrXI:513227-513504 ( 58) GCGCCCATTCTGACCATTAAACTATCACGG 1 chrX:355212-355312 ( 44) GCGCCCATTCTGACCATTAAACTATCACGG 1 chrIX:336105-336644 ( 66) GCGCCCATTCTGACCATTAAACTATCACGG 1 chrIV:568722-569210 ( 49) GCGCCCATTCTGACCATTAAACTATCACGG 1 chrX:542793-542893 ( 44) TTGCGCCTTAAACCAACTTGGCTACCGAGA 1 chrVI:167257-167634 ( 43) TTGCGCCTTAAACCAACTTGGCTACCGAGA 1 chrII:36259-36551 ( 44) TCTGGCGCTCTCCCAACTGAGCTAAATCCG 1 chrXIII:352109-352457 ( 48) TCTGGCGCTCTCCCAACTGAGCTAAATCCG 1 chrX:422688-422788 ( 13) ACTGACGCTCTTCCTACTGAGCTACTGAAG 1 chrVII:287243-287664 ( 22) GTCGAAAGCTCTACCATTGAGCCACCGCTT 1 chrX:415732-415832 ( 60) GTCGAAAGCTCTACCATTGAGCCACCGCTT 1 chrXI:302705-303193 ( 20) GTCGAAAGCTCTACCATTGAGCCACCGCTT 1 chrXVI:581878-582315 ( 17) TCATACGCGCTACCGATTGCGCCAACAAGG 1 chrXII:625171-625673 ( 23) CCCCAAATATTCCCCACTACGCCAAGAATA 1 chrIII:123502-123778 ( 28) AGCGAGAATCATACCTCTAGACCACACGCC 1 chrXVI:775667-776013 ( 16) ATCTGCTGCGCTACCACTGCGCCATACGAG 1 chrI:205813-206773 ( 7) CTAATCAGCACCACCACTGAACCATGGACT 1 chrXV:619623-621510 ( 25) TCTGCGTTGTAAACAACTTCACCACGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCSVHSVCTYWWMCCACTRRRCCAHSVVRS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.7808 E= 2.1e-107 -82 88 73 -97 -133 131 2 -56 -255 65 147 -133 3 56 47 -114 -33 56 -44 11 -133 108 131 -1248 -56 108 81 -255 -155 156 -12 -97 -155 47 -112 81 -255 65 -112 86 25 -12 -344 50 61 -144 -12 -14 77 114 -1248 -255 -1248 239 -1248 -1248 -33 160 -27 -414 164 -1248 -344 -414 -1248 211 -1248 -82 -1248 -1248 -1248 169 32 -44 81 -114 25 -12 126 -1248 11 -1248 181 -1248 -1248 239 -1248 -1248 -1248 195 -1248 -23 169 -1248 -1248 -1248 -14 131 -1248 -33 -68 56 108 -133 3 2 88 -114 32 56 56 -255 -44 14 120 -133 -155 108 81 -97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCSVHSVCTYWWMCCACTRRRCCAHSVVRS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 57 E= 2.1e-107 0.175439 0.350877 0.315789 0.157895 0.122807 0.473684 0.192982 0.210526 0.052632 0.298246 0.526316 0.122807 0.315789 0.280702 0.263158 0.140351 0.245614 0.280702 0.140351 0.333333 0.122807 0.403509 0.473684 0.000000 0.210526 0.403509 0.333333 0.052632 0.105263 0.561404 0.175439 0.157895 0.105263 0.263158 0.087719 0.543860 0.052632 0.298246 0.087719 0.561404 0.368421 0.175439 0.017544 0.438596 0.473684 0.070175 0.175439 0.280702 0.526316 0.421053 0.000000 0.052632 0.000000 1.000000 0.000000 0.000000 0.245614 0.578947 0.157895 0.017544 0.964912 0.000000 0.017544 0.017544 0.000000 0.824561 0.000000 0.175439 0.000000 0.000000 0.000000 1.000000 0.385965 0.140351 0.333333 0.140351 0.368421 0.175439 0.456140 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.736842 0.000000 0.263158 1.000000 0.000000 0.000000 0.000000 0.280702 0.473684 0.000000 0.245614 0.192982 0.280702 0.403509 0.122807 0.315789 0.192982 0.350877 0.140351 0.385965 0.280702 0.280702 0.052632 0.228070 0.210526 0.438596 0.122807 0.105263 0.403509 0.333333 0.157895 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCSVHSVCTYWWMCCACTRRRCCAHSVVRS MEME-2 regular expression -------------------------------------------------------------------------------- [CG][CT][GC][ACG][TCA][GC][CGA]C[TC][TC][TA][AT][AC]C[CA]ACT[AG][GA][GA]C[CT]A[CAT][GC][GA][ACG][GAC][CG] -------------------------------------------------------------------------------- Time 680.63 secs. ******************************************************************************** ******************************************************************************** MOTIF TTYTHTYKTYTTTCTTYTTYT MEME-3 width = 21 sites = 92 llr = 904 E-value = 5.9e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYTHTYKTYTTTCTTYTTYT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2:123:1:2::::231:2::2 pos.-specific C 12313332242:16:151:5: probability G ::2::123:1:1:::2::1:1 matrix T 785746556589937556948 bits 2.4 2.2 1.9 1.7 Relative 1.4 Entropy 1.2 ** * (14.2 bits) 1.0 * *** * ** 0.7 ** * ***** * *** 0.5 ** * * ******** ***** 0.2 ********************* 0.0 --------------------- Multilevel TTTTTTTTTTTTTCTTTTTCT consensus C CCCG CC TAGCA T sequence A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTHTYKTYTTTCTTYTTYT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrX:90087-90187 - 14 6.48e-08 GATGCCGTCC TTTTTCCGTCTTCCTTCTTTT TCGTAAGCGA chrXVI:699925-700702 + 19 1.32e-07 AGCATACTAA ATTTCCCCTCTTTCTTCCTCT AGGGTGTCGT chrXIV:720688-723176 - 35 1.56e-07 CCTCACAATT TTCTACTTTTTTTTTTTTTTT AGTTTAATCC chrXV:110144-111177 - 80 1.85e-07 . TTTTCTCCTCTTTTTTTATTT TTAAAAAAAG chrIV:322219-323597 - 17 2.17e-07 TCTTGGCGTC TTCTTCTTCGTTTCTCTTTCT GGAAATTCTC chrXV:505752-506974 + 1 3.49e-07 . CTTTTTTGTTTTCCTTCTTTT ATAGATCGAC chrXV:677499-679086 + 55 3.49e-07 ACCCTTTGGT TTCTTTGGCTTTTCAGTTTTT TCAACCTTTG chrII:304319-305639 + 19 3.49e-07 TTAAATAAGA ACCTTCGTTTTTTCTGCTTCT TGAATTACCG chrXV:409137-409931 - 35 4.07e-07 CGGCTGCCAT TTCTTCTTCGTTTCTGTATCT GGAGTATCAA chrV:51816-53172 - 7 4.72e-07 TACCCTCCGT TTTTTTGTTTTTTCATTTTTA TCATTT chrXII:1028229-1028539 + 3 5.47e-07 CT TTTTTCCTTCTTTCTTCCTTG TCTTAATCTG chrIX:68245-68478 + 58 5.47e-07 CATTACTAAG ATGTATGGTTTTTCTTTTTTT GTGCTCCGTG chrXII:867398-869474 - 28 7.29e-07 TAACATTTAA TTTTTTTCTTTTTCATTCGCT GTCAAAAATT chrXII:780206-781847 - 5 9.63e-07 ACTTTTTTTG TTTTTGTTTCCTTTTGTTTTT CTTA chrVIII:115855-116288 - 8 9.63e-07 GCTATCGGAC ATTTTTTTTCTTTAATTTTTT CAGCGAG chrXIV:444529-444771 + 56 1.10e-06 ATTGACTTTT TTTTTTTTTTTGTTATTTTCT GTGCCTTTCG chrXVI:550242-551374 + 25 1.10e-06 GATTTCAGGT TCTTCTTCTTCTTCACCATCT TCGTCTTCAT chrXV:1004062-1004987 + 3 1.26e-06 AT TTTACTTCATTTTTTTTTTCT GTTCTCGCTT chrIV:187632-190051 + 45 1.26e-06 ATCTAATGGT TTTTCTTGATTTTCTTTCTCA ACTATAAAAG chrIX:197416-198001 + 9 1.64e-06 CGGAGTTA TTTTTTATTCTTTTTTTTTTA GGGACTATTT chrIV:1012537-1013509 - 75 1.64e-06 CTCTC TTATTTTGTTTTTATTTCTCT CTAGCCTTAT chrIV:1114120-1116311 + 70 2.11e-06 AAGTTCAACT TCTTGCGGTTTTTCATCTTCT TCAGATTCTA chrII:529374-531824 - 64 2.39e-06 CGAGATTAAT TATTTCTCTTTTTCTTTTTCT TCAAAGTTTC chrVII:869301-871161 + 79 2.39e-06 TTCATCTTCT TCGTCGTCATCTTCTTCTTCT T chrXI:282807-284961 - 72 2.39e-06 TAGCTTCG TCCTTCTTCTTTTCAGCCTTT GACTTTTCGG chrVI:191253-191734 - 35 2.70e-06 TCTTTTTTAA ATTTTTGCTTCTTATCCTTCT ATAATAAACC chrVII:950216-950453 - 7 2.70e-06 CCATGTTACA TCTACTGGCTCTTCTTCATCT ATGGAA chrX:90891-90991 - 33 2.70e-06 CCCATTTCTT CTTTATTTCTTTTCTCTTTCA TTTGGAAAAC chrII:290322-291689 + 54 2.70e-06 CTGCAGTTTC TTCAATTCTTCTTCAGCATCT TCTGGGGACA chrXIII:83580-86031 - 52 2.70e-06 GGGGTATATA TTCTTCTGCCCTTATTTATTT GAATATTCTC chrIV:170059-170256 - 27 3.04e-06 TACTATCACT TTGTTATTTCTTTTTGTTTCT CTAAAATTAT chrXII:448558-448930 + 61 3.42e-06 ATTAAAATTG TTGACGTTCTCTTCTTTTTTT CATATTTGAG chrXII:932117-932473 - 70 3.85e-06 AACCGATTTT ATTATCCTCGTTTCTGTTTCT CTACATCCGT chrXVI:810595-811308 - 5 4.32e-06 CGATACTAGA TTTTTTTTTATTTATTTATTT CTGA chrII:680371-682266 - 55 4.84e-06 TTATTGTTGA TTTCTTCGCTCGTCTTCTTTT TCTGGTGGCG chrXV:679760-680748 - 52 4.84e-06 CTCATATAAT ATCTTGGCCTTTTCTTCATTT TCAGCCTGTT chrVII:185501-185889 - 5 5.41e-06 ATATATTAAA TTCTACTTCCTTTTTATATCT CAAA chrXVI:748796-751286 + 40 5.41e-06 AGGTTTTACC TCTACCGGGTTTTCTTCTTCT TTTGCAGAAG chrXIV:452745-456218 - 75 6.04e-06 CTTTC TCTCCTCGTCTTTCTTCCGTT TGGCTTCTTC chrII:411444-415258 - 35 6.04e-06 AAAATCGATG TTTTCCTCTGTGTATTCTTTT GGTAATGATT chrXIV:166786-167701 - 13 6.73e-06 TAAGTTTATT TTCTATATCTTTTCTATATTT CATTTCACTT chrXII:214725-215051 - 12 6.73e-06 TATTTTTTAC TTTTATTCTCCTTTATTTTTA ACAATTTCTA chrVII:824349-827404 - 44 7.50e-06 CAGTAGTGAC TTCATCTTTCTTTCAACTTCA TCCTTGTCCA chrIX:255101-257113 - 56 8.33e-06 AAAACGAAGA TTGAATCTTCCTTTTTTATTT CTGTGTTAAA chrVI:208518-209319 + 72 8.33e-06 TGCGCAACCC TCTTGTCGTCTTTAAGTTTCT TTTTTTGT chrXIV:568059-568502 - 80 9.25e-06 . ATGCATTTTTTTTTTTTATCT CCAGCATTAA chrXIV:417639-418165 + 8 9.25e-06 GGCTAAT TTTTTTATCCTTTCTTCATGT TTTTGCTTCA chrXIV:715985-718301 + 17 9.25e-06 TGAATACTGG TTTTTTCTTATTTTTGCTGTT AGCACTAGCG chrXV:904858-906324 - 48 1.03e-05 GCTTGCCCAT ATATTTGGTCTTTAAGCTTCT TGTATTTCTC chrXII:845040-846028 - 30 1.03e-05 AATTAAATCA TTTTCCCCACCTTCTTCCTTG ACTACTGCTG chrVII:148024-149493 + 69 1.13e-05 CGATGGGCGA CTTCCTTCTTTTTCTTTAGTT AGTGTGAACT chrIV:570716-573889 - 13 1.13e-05 TAAAACTTCA TTTTCCGTTTTTTCGATTTTT ACAGATTTAC chrII:591523-591819 - 50 1.13e-05 GACCTGCATA ATTTTTATACTTTTTCCTTTT AGATATATGT chrII:89667-89941 - 77 1.25e-05 CCA CCCATTTCTTTTTCATCTGCT CTAACTTTTG chrIII:162111-163293 - 61 1.25e-05 CGTGCTCAAG TTGAATTGTGCTTTTTTTTTT ATGGTTATGA chrVI:221800-222031 - 10 1.39e-05 CCTTTCCGGC TCCAACTTTCTTTTTTTTTCG AAAATGATG chrVIII:462853-463930 - 57 1.39e-05 GCTACCTCCA TTGTATTCACCTTCACCTTCA GTTAAAAATG chrIX:370261-370567 - 27 1.53e-05 TCGGATTATA ATCTATATTTTTTCTACTTCG ATTTTATGTA chrX:651971-652071 - 68 1.68e-05 TATTGAAAAT CTTTCACTTTTTTTAGCTTCT TAACGGTTAG chrII:88924-89433 - 34 1.68e-05 TCCGCAACTT TTGTACGTTCTTTATTTTACT AACAAGCGTC chrX:647402-647502 - 2 1.68e-05 AAACAACAAG ACATCTTGACCTTCTTCATCT C chrXV:710089-710494 + 41 1.85e-05 AATTTTTTTA CCTTTGATCCTTTATTTTTCT TAATTTCCTT chrXV:79800-80108 + 67 2.03e-05 TTACATGGAG TTGCTTTCTTTTTTTGTCTCA GCAGTCATTG chrIX:27325-28512 + 32 2.23e-05 CTGTCTTGTG CTCTCTTCATTTTATTTTTTA TTAGCAGAAC chrIV:434039-435102 + 48 2.23e-05 AATGTTATTA TTTTATCTTCTTTCCTTTTAT GCGTTGTCAT chrXVI:297616-298758 + 39 2.23e-05 TAATCTAGCA TTTCCTTTCTCTCCCTCTTCT CATGCATATC chrIV:541188-541875 - 73 2.23e-05 TGCTGAT TTTCTTTTTTCTTATTCTTAT TGTGCTTCAT chrXIII:126137-128366 + 60 2.44e-05 CGTCTCAAAG TTCTATAGCTCTTTACTTTTT GTCCATCAAT chrXIV:282331-283777 + 47 2.44e-05 AAGACCTAAT TTTCTCCGGTTTTATGTTTTT TACCCCCCCT chrXVI:398298-403911 + 16 2.44e-05 CGTCAATATT TTTTCTTTATATTCTGCATTT ACGGAGAAAT chrIX:68678-69982 - 4 2.67e-05 TCAGACAAGG TTCTACCGTCTTCCAATTGCT TAC chrIV:354621-354791 + 12 2.67e-05 AATGGTAATC ATGTCGCCTGTTTCTCCTTCG GATTACATAA chrVII:779408-779697 - 29 2.67e-05 TTCCTTTTCA TTCTTTCCATTTTATCCATTA TCTGATGCAT chrXII:796423-796821 - 75 2.92e-05 GGAAA TTAATTTGTCTTCTATCTTTT GCATCCGTGC chrXIV:585497-586574 - 78 3.19e-05 TA TTCACTATTCCATCTTCTTCT TACACAAGTT chrXVI:378715-378981 + 71 3.80e-05 TGAATGAACC TCTTGTCTTCTTCCGGCTTCT GCTTACATC chrXVI:75447-76648 - 53 4.13e-05 CTCCGTGGAG TCTTTGTTTATTTATTTTGCT CGTATACTAC chrIII:127552-127868 - 34 4.49e-05 CATGGAGTCA TTTTATCTTGTGTCACTTTTA CAGAAAAAGT chrXIII:291905-295012 - 77 4.88e-05 GGC TTTTTGATTTCTTCATCGTTT AATTTCAAAT chrXI:337672-338113 + 43 5.74e-05 TTCTTGTTCA TTAACTTTTTCTTCACTAGCT TCAGACTTTT chrVIII:173444-175921 + 42 5.74e-05 TCTCTTGCAT ACCAAGTGCCTTTCTCTATCT CCGTTTCTAC chrXI:488226-488983 - 30 6.22e-05 ACTAGATTAT CTATATAGTCTTCTTGTTTCT CTAAGGCTAC chrVII:533809-535166 - 43 6.22e-05 ACTAACAAGT ATGTTTTTACTTTTTACTTTA TCATAGAACA chrVIII:381519-383300 + 43 6.22e-05 ATGTAATTAG TTGTATCTTTTTTCTGTAATG GGGAAACGGC chrVIII:411000-411740 - 69 6.22e-05 AACTGGATAC ATGTATCGTGTTTAAGTTTCA TGTAAGATAT chrXVI:829951-830621 + 64 6.73e-05 GCATTCCTCT ACTTCTCTTGTGCCATCTTTT TGGCTAAGAC chrXVI:139366-142916 + 42 7.28e-05 CTCACTTTCT TTGTCACTATTGTCTTCTGCT TGTTCAGAAG chrIX:96886-97542 + 26 7.86e-05 TAATCTATAT TCATTTATATTTTATATTTCT TACCGAGGAA chrXIV:725755-726340 + 57 7.86e-05 AAAAGATAGC TTCAATGTATTTCATGTATCT GAAAACGCTT chrVII:774156-774544 + 16 8.49e-05 TACTTCATTA TTCTTCTCTATTCTTCCCTTT CATCAATTAA chrXI:556085-556350 + 79 1.06e-04 TTCTAAAAAG TTATATATGCTTTTTGTATTT A chrII:254902-255680 - 54 1.32e-04 TCGTATTCAA CTGCCCGGTTTTTCTTCTACA AATATGAGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTHTYKTYTTTCTTYTTYT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:90087-90187 6.5e-08 13_[-3]_66 chrXVI:699925-700702 1.3e-07 18_[+3]_61 chrXIV:720688-723176 1.6e-07 34_[-3]_45 chrXV:110144-111177 1.8e-07 79_[-3] chrIV:322219-323597 2.2e-07 16_[-3]_63 chrXV:505752-506974 3.5e-07 [+3]_79 chrXV:677499-679086 3.5e-07 54_[+3]_25 chrII:304319-305639 3.5e-07 18_[+3]_61 chrXV:409137-409931 4.1e-07 34_[-3]_45 chrV:51816-53172 4.7e-07 6_[-3]_73 chrXII:1028229-1028539 5.5e-07 2_[+3]_77 chrIX:68245-68478 5.5e-07 57_[+3]_22 chrXII:867398-869474 7.3e-07 27_[-3]_52 chrXII:780206-781847 9.6e-07 4_[-3]_75 chrVIII:115855-116288 9.6e-07 7_[-3]_72 chrXIV:444529-444771 1.1e-06 55_[+3]_24 chrXVI:550242-551374 1.1e-06 24_[+3]_55 chrXV:1004062-1004987 1.3e-06 2_[+3]_77 chrIV:187632-190051 1.3e-06 44_[+3]_35 chrIX:197416-198001 1.6e-06 8_[+3]_71 chrIV:1012537-1013509 1.6e-06 74_[-3]_5 chrIV:1114120-1116311 2.1e-06 69_[+3]_10 chrII:529374-531824 2.4e-06 63_[-3]_16 chrVII:869301-871161 2.4e-06 78_[+3]_1 chrXI:282807-284961 2.4e-06 71_[-3]_8 chrVI:191253-191734 2.7e-06 34_[-3]_45 chrVII:950216-950453 2.7e-06 6_[-3]_73 chrX:90891-90991 2.7e-06 32_[-3]_47 chrII:290322-291689 2.7e-06 53_[+3]_26 chrXIII:83580-86031 2.7e-06 51_[-3]_28 chrIV:170059-170256 3e-06 26_[-3]_53 chrXII:448558-448930 3.4e-06 60_[+3]_19 chrXII:932117-932473 3.8e-06 69_[-3]_10 chrXVI:810595-811308 4.3e-06 4_[-3]_75 chrII:680371-682266 4.8e-06 54_[-3]_25 chrXV:679760-680748 4.8e-06 51_[-3]_28 chrVII:185501-185889 5.4e-06 4_[-3]_75 chrXVI:748796-751286 5.4e-06 39_[+3]_40 chrXIV:452745-456218 6e-06 74_[-3]_5 chrII:411444-415258 6e-06 34_[-3]_45 chrXIV:166786-167701 6.7e-06 12_[-3]_67 chrXII:214725-215051 6.7e-06 11_[-3]_68 chrVII:824349-827404 7.5e-06 43_[-3]_36 chrIX:255101-257113 8.3e-06 55_[-3]_24 chrVI:208518-209319 8.3e-06 71_[+3]_8 chrXIV:568059-568502 9.2e-06 79_[-3] chrXIV:417639-418165 9.2e-06 7_[+3]_72 chrXIV:715985-718301 9.2e-06 16_[+3]_63 chrXV:904858-906324 1e-05 47_[-3]_32 chrXII:845040-846028 1e-05 29_[-3]_50 chrVII:148024-149493 1.1e-05 68_[+3]_11 chrIV:570716-573889 1.1e-05 12_[-3]_67 chrII:591523-591819 1.1e-05 49_[-3]_30 chrII:89667-89941 1.3e-05 76_[-3]_3 chrIII:162111-163293 1.3e-05 60_[-3]_19 chrVI:221800-222031 1.4e-05 9_[-3]_70 chrVIII:462853-463930 1.4e-05 56_[-3]_23 chrIX:370261-370567 1.5e-05 26_[-3]_53 chrX:651971-652071 1.7e-05 67_[-3]_12 chrII:88924-89433 1.7e-05 33_[-3]_46 chrX:647402-647502 1.7e-05 1_[-3]_78 chrXV:710089-710494 1.8e-05 40_[+3]_39 chrXV:79800-80108 2e-05 66_[+3]_13 chrIX:27325-28512 2.2e-05 31_[+3]_48 chrIV:434039-435102 2.2e-05 47_[+3]_32 chrXVI:297616-298758 2.2e-05 38_[+3]_41 chrIV:541188-541875 2.2e-05 72_[-3]_7 chrXIII:126137-128366 2.4e-05 59_[+3]_20 chrXIV:282331-283777 2.4e-05 46_[+3]_33 chrXVI:398298-403911 2.4e-05 15_[+3]_64 chrIX:68678-69982 2.7e-05 3_[-3]_76 chrIV:354621-354791 2.7e-05 11_[+3]_68 chrVII:779408-779697 2.7e-05 28_[-3]_51 chrXII:796423-796821 2.9e-05 74_[-3]_5 chrXIV:585497-586574 3.2e-05 77_[-3]_2 chrXVI:378715-378981 3.8e-05 70_[+3]_9 chrXVI:75447-76648 4.1e-05 52_[-3]_27 chrIII:127552-127868 4.5e-05 33_[-3]_46 chrXIII:291905-295012 4.9e-05 76_[-3]_3 chrXI:337672-338113 5.7e-05 42_[+3]_37 chrVIII:173444-175921 5.7e-05 41_[+3]_38 chrXI:488226-488983 6.2e-05 29_[-3]_50 chrVII:533809-535166 6.2e-05 42_[-3]_37 chrVIII:381519-383300 6.2e-05 42_[+3]_37 chrVIII:411000-411740 6.2e-05 68_[-3]_11 chrXVI:829951-830621 6.7e-05 63_[+3]_16 chrXVI:139366-142916 7.3e-05 41_[+3]_38 chrIX:96886-97542 7.9e-05 25_[+3]_54 chrXIV:725755-726340 7.9e-05 56_[+3]_23 chrVII:774156-774544 8.5e-05 15_[+3]_64 chrXI:556085-556350 0.00011 78_[+3]_1 chrII:254902-255680 0.00013 53_[-3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTHTYKTYTTTCTTYTTYT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYTHTYKTYTTTCTTYTTYT width=21 seqs=92 chrX:90087-90187 ( 14) TTTTTCCGTCTTCCTTCTTTT 1 chrXVI:699925-700702 ( 19) ATTTCCCCTCTTTCTTCCTCT 1 chrXIV:720688-723176 ( 35) TTCTACTTTTTTTTTTTTTTT 1 chrXV:110144-111177 ( 80) TTTTCTCCTCTTTTTTTATTT 1 chrIV:322219-323597 ( 17) TTCTTCTTCGTTTCTCTTTCT 1 chrXV:505752-506974 ( 1) CTTTTTTGTTTTCCTTCTTTT 1 chrXV:677499-679086 ( 55) TTCTTTGGCTTTTCAGTTTTT 1 chrII:304319-305639 ( 19) ACCTTCGTTTTTTCTGCTTCT 1 chrXV:409137-409931 ( 35) TTCTTCTTCGTTTCTGTATCT 1 chrV:51816-53172 ( 7) TTTTTTGTTTTTTCATTTTTA 1 chrXII:1028229-1028539 ( 3) TTTTTCCTTCTTTCTTCCTTG 1 chrIX:68245-68478 ( 58) ATGTATGGTTTTTCTTTTTTT 1 chrXII:867398-869474 ( 28) TTTTTTTCTTTTTCATTCGCT 1 chrXII:780206-781847 ( 5) TTTTTGTTTCCTTTTGTTTTT 1 chrVIII:115855-116288 ( 8) ATTTTTTTTCTTTAATTTTTT 1 chrXIV:444529-444771 ( 56) TTTTTTTTTTTGTTATTTTCT 1 chrXVI:550242-551374 ( 25) TCTTCTTCTTCTTCACCATCT 1 chrXV:1004062-1004987 ( 3) TTTACTTCATTTTTTTTTTCT 1 chrIV:187632-190051 ( 45) TTTTCTTGATTTTCTTTCTCA 1 chrIX:197416-198001 ( 9) TTTTTTATTCTTTTTTTTTTA 1 chrIV:1012537-1013509 ( 75) TTATTTTGTTTTTATTTCTCT 1 chrIV:1114120-1116311 ( 70) TCTTGCGGTTTTTCATCTTCT 1 chrII:529374-531824 ( 64) TATTTCTCTTTTTCTTTTTCT 1 chrVII:869301-871161 ( 79) TCGTCGTCATCTTCTTCTTCT 1 chrXI:282807-284961 ( 72) TCCTTCTTCTTTTCAGCCTTT 1 chrVI:191253-191734 ( 35) ATTTTTGCTTCTTATCCTTCT 1 chrVII:950216-950453 ( 7) TCTACTGGCTCTTCTTCATCT 1 chrX:90891-90991 ( 33) CTTTATTTCTTTTCTCTTTCA 1 chrII:290322-291689 ( 54) TTCAATTCTTCTTCAGCATCT 1 chrXIII:83580-86031 ( 52) TTCTTCTGCCCTTATTTATTT 1 chrIV:170059-170256 ( 27) TTGTTATTTCTTTTTGTTTCT 1 chrXII:448558-448930 ( 61) TTGACGTTCTCTTCTTTTTTT 1 chrXII:932117-932473 ( 70) ATTATCCTCGTTTCTGTTTCT 1 chrXVI:810595-811308 ( 5) TTTTTTTTTATTTATTTATTT 1 chrII:680371-682266 ( 55) TTTCTTCGCTCGTCTTCTTTT 1 chrXV:679760-680748 ( 52) ATCTTGGCCTTTTCTTCATTT 1 chrVII:185501-185889 ( 5) TTCTACTTCCTTTTTATATCT 1 chrXVI:748796-751286 ( 40) TCTACCGGGTTTTCTTCTTCT 1 chrXIV:452745-456218 ( 75) TCTCCTCGTCTTTCTTCCGTT 1 chrII:411444-415258 ( 35) TTTTCCTCTGTGTATTCTTTT 1 chrXIV:166786-167701 ( 13) TTCTATATCTTTTCTATATTT 1 chrXII:214725-215051 ( 12) TTTTATTCTCCTTTATTTTTA 1 chrVII:824349-827404 ( 44) TTCATCTTTCTTTCAACTTCA 1 chrIX:255101-257113 ( 56) TTGAATCTTCCTTTTTTATTT 1 chrVI:208518-209319 ( 72) TCTTGTCGTCTTTAAGTTTCT 1 chrXIV:568059-568502 ( 80) ATGCATTTTTTTTTTTTATCT 1 chrXIV:417639-418165 ( 8) TTTTTTATCCTTTCTTCATGT 1 chrXIV:715985-718301 ( 17) TTTTTTCTTATTTTTGCTGTT 1 chrXV:904858-906324 ( 48) ATATTTGGTCTTTAAGCTTCT 1 chrXII:845040-846028 ( 30) TTTTCCCCACCTTCTTCCTTG 1 chrVII:148024-149493 ( 69) CTTCCTTCTTTTTCTTTAGTT 1 chrIV:570716-573889 ( 13) TTTTCCGTTTTTTCGATTTTT 1 chrII:591523-591819 ( 50) ATTTTTATACTTTTTCCTTTT 1 chrII:89667-89941 ( 77) CCCATTTCTTTTTCATCTGCT 1 chrIII:162111-163293 ( 61) TTGAATTGTGCTTTTTTTTTT 1 chrVI:221800-222031 ( 10) TCCAACTTTCTTTTTTTTTCG 1 chrVIII:462853-463930 ( 57) TTGTATTCACCTTCACCTTCA 1 chrIX:370261-370567 ( 27) ATCTATATTTTTTCTACTTCG 1 chrX:651971-652071 ( 68) CTTTCACTTTTTTTAGCTTCT 1 chrII:88924-89433 ( 34) TTGTACGTTCTTTATTTTACT 1 chrX:647402-647502 ( 2) ACATCTTGACCTTCTTCATCT 1 chrXV:710089-710494 ( 41) CCTTTGATCCTTTATTTTTCT 1 chrXV:79800-80108 ( 67) TTGCTTTCTTTTTTTGTCTCA 1 chrIX:27325-28512 ( 32) CTCTCTTCATTTTATTTTTTA 1 chrIV:434039-435102 ( 48) TTTTATCTTCTTTCCTTTTAT 1 chrXVI:297616-298758 ( 39) TTTCCTTTCTCTCCCTCTTCT 1 chrIV:541188-541875 ( 73) TTTCTTTTTTCTTATTCTTAT 1 chrXIII:126137-128366 ( 60) TTCTATAGCTCTTTACTTTTT 1 chrXIV:282331-283777 ( 47) TTTCTCCGGTTTTATGTTTTT 1 chrXVI:398298-403911 ( 16) TTTTCTTTATATTCTGCATTT 1 chrIX:68678-69982 ( 4) TTCTACCGTCTTCCAATTGCT 1 chrIV:354621-354791 ( 12) ATGTCGCCTGTTTCTCCTTCG 1 chrVII:779408-779697 ( 29) TTCTTTCCATTTTATCCATTA 1 chrXII:796423-796821 ( 75) TTAATTTGTCTTCTATCTTTT 1 chrXIV:585497-586574 ( 78) TTCACTATTCCATCTTCTTCT 1 chrXVI:378715-378981 ( 71) TCTTGTCTTCTTCCGGCTTCT 1 chrXVI:75447-76648 ( 53) TCTTTGTTTATTTATTTTGCT 1 chrIII:127552-127868 ( 34) TTTTATCTTGTGTCACTTTTA 1 chrXIII:291905-295012 ( 77) TTTTTGATTTCTTCATCGTTT 1 chrXI:337672-338113 ( 43) TTAACTTTTTCTTCACTAGCT 1 chrVIII:173444-175921 ( 42) ACCAAGTGCCTTTCTCTATCT 1 chrXI:488226-488983 ( 30) CTATATAGTCTTCTTGTTTCT 1 chrVII:533809-535166 ( 43) ATGTTTTTACTTTTTACTTTA 1 chrVIII:381519-383300 ( 43) TTGTATCTTTTTTCTGTAATG 1 chrVIII:411000-411740 ( 69) ATGTATCGTGTTTAAGTTTCA 1 chrXVI:829951-830621 ( 64) ACTTCTCTTGTGCCATCTTTT 1 chrXVI:139366-142916 ( 42) TTGTCACTATTGTCTTCTGCT 1 chrIX:96886-97542 ( 26) TCATTTATATTTTATATTTCT 1 chrXIV:725755-726340 ( 57) TTCAATGTATTTCATGTATCT 1 chrVII:774156-774544 ( 16) TTCTTCTCTATTCTTCCCTTT 1 chrXI:556085-556350 ( 79) TTATATATGCTTTTTGTATTT 1 chrII:254902-255680 ( 54) CTGCCCGGTTTTTCTTCTACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTHTYKTYTTTCTTYTTYT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 9.42764 E= 5.9e-018 -74 -96 -1317 121 -483 4 -1317 136 -183 39 -13 66 -83 -96 -1317 123 -25 51 -255 49 -324 45 -96 98 -125 39 -32 60 -1317 26 45 72 -102 4 -255 100 -283 91 -96 69 -483 26 -1317 130 -483 -1317 -155 158 -1317 -81 -1317 153 -66 154 -1317 -31 -25 -313 -313 117 -183 -43 26 81 -1317 126 -1317 81 -37 -81 -413 105 -324 -1317 -96 149 -383 145 -413 53 -102 -1317 -155 134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTHTYKTYTTTCTTYTTYT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 92 E= 5.9e-018 0.184783 0.097826 0.000000 0.717391 0.010870 0.195652 0.000000 0.793478 0.086957 0.250000 0.173913 0.489130 0.173913 0.097826 0.000000 0.728261 0.260870 0.271739 0.032609 0.434783 0.032609 0.260870 0.097826 0.608696 0.130435 0.250000 0.152174 0.467391 0.000000 0.228261 0.260870 0.510870 0.152174 0.195652 0.032609 0.619565 0.043478 0.358696 0.097826 0.500000 0.010870 0.228261 0.000000 0.760870 0.010870 0.000000 0.065217 0.923913 0.000000 0.108696 0.000000 0.891304 0.195652 0.554348 0.000000 0.250000 0.260870 0.021739 0.021739 0.695652 0.086957 0.141304 0.228261 0.543478 0.000000 0.456522 0.000000 0.543478 0.239130 0.108696 0.010870 0.641304 0.032609 0.000000 0.097826 0.869565 0.021739 0.521739 0.010870 0.445652 0.152174 0.000000 0.065217 0.782609 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTHTYKTYTTTCTTYTTYT MEME-3 regular expression -------------------------------------------------------------------------------- TT[TC]T[TCA][TC][TC][TGC]T[TC][TC]TT[CT][TA][TG][TC][TA]T[CT]T -------------------------------------------------------------------------------- Time 999.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:197307-197817 1.28e-09 25_[-1(4.44e-13)]_46 chrVIII:126495-127819 2.45e-01 100 chrXV:110144-111177 1.56e-03 79_[-3(1.85e-07)] chrVII:53695-53911 6.11e-01 100 chrXI:282807-284961 1.58e-03 71_[-3(2.39e-06)]_8 chrI:71747-73676 7.10e-01 100 chrIV:1090152-1090442 8.91e-01 100 chrXVI:810595-811308 7.12e-03 4_[-3(4.32e-06)]_75 chrXIII:752661-752825 1.13e-01 100 chrVII:405483-405765 7.70e-01 100 chrVII:277076-277336 3.18e-01 100 chrXI:431913-433002 1.55e-01 100 chrIV:444975-446838 4.68e-02 100 chrII:611953-614072 7.03e-01 100 chrXVI:398298-403911 1.99e-02 15_[+3(2.44e-05)]_64 chrIV:667773-668549 6.33e-01 100 chrXII:41354-45970 3.62e-01 100 chrIX:23473-25321 7.16e-01 100 chrXIV:560147-560780 7.26e-01 100 chrIV:568722-569210 3.58e-11 7_[-1(5.87e-11)]_12_[-2(7.76e-08)]_\ 22 chrXII:515337-516840 2.99e-01 100 chrIV:1489000-1489912 2.19e-01 100 chrII:87962-88611 2.61e-01 100 chrXI:495516-496920 6.36e-01 100 chrXVI:247252-250574 9.68e-02 100 chrI:99922-100820 3.15e-02 100 chrXV:797725-798872 1.48e-01 100 chrXII:214725-215051 7.90e-10 11_[-3(6.73e-06)]_13_[+1(1.84e-11)]_\ 26 chrVII:738759-739472 4.02e-07 57_[-2(2.41e-11)]_13 chrXV:896483-898138 4.98e-01 100 chrXIII:251550-252826 3.44e-01 100 chrIX:262830-267558 7.15e-01 100 chrXVI:572024-572485 6.37e-04 65_[-2(6.41e-08)]_5 chrII:256334-257697 5.15e-01 100 chrI:131043-132071 1.02e-01 100 chrXV:727808-733043 7.88e-01 100 chrIV:509740-509920 7.21e-01 100 chrXIII:861222-861390 6.05e-01 100 chrVI:157916-158212 9.83e-01 100 chrXII:805857-807138 3.24e-01 100 chrVIII:104483-105411 4.68e-01 100 chrX:422688-422788 1.88e-09 12_[-2(5.00e-07)]_12_[-1(8.76e-10)]_\ 17 chrVII:115271-115699 2.97e-06 53_[-2(3.44e-10)]_17 chrVIII:173444-175921 3.69e-02 41_[+3(5.74e-05)]_38 chrXII:932117-932473 6.56e-03 69_[-3(3.85e-06)]_10 chrXIII:372195-372752 3.50e-12 22_[+1(1.39e-10)]_13_[+2(2.46e-09)]_\ 6 chrXIV:284552-286108 2.83e-01 100 chrXIV:653754-661778 8.75e-02 100 chrVII:251086-253072 1.18e-01 100 chrXVI:769001-769462 3.90e-07 26_[+1(1.25e-10)]_45 chrXIII:146558-147891 2.63e-01 100 chrIV:1150691-1151165 1.69e-06 32_[+2(3.44e-10)]_38 chrXV:679760-680748 1.15e-02 51_[-3(4.84e-06)]_28 chrXIII:352109-352457 1.34e-03 47_[-2(4.63e-07)]_23 chrVII:774156-774544 2.03e-07 15_[+3(8.49e-05)]_13_[-2(3.61e-09)]_\ 21 chrXI:618812-619284 8.75e-01 100 chrX:227638-227738 9.36e-01 100 chrV:550942-551586 2.69e-09 71_[+1(4.44e-13)] chrXVI:338759-339112 7.14e-06 3_[+2(9.54e-10)]_67 chrV:411071-413899 5.58e-01 100 chrXI:302705-303193 7.80e-04 19_[-2(5.39e-07)]_51 chrXII:888754-892438 9.80e-01 100 chrXII:96111-96321 2.98e-01 100 chrX:703297-703397 2.68e-01 100 chrIX:315619-316560 9.47e-01 100 chrII:168401-169581 3.76e-01 100 chrVI:208518-209319 5.14e-03 71_[+3(8.33e-06)]_8 chrXIII:480416-480827 5.98e-11 50_[+1(1.00e-13)]_21 chrXIV:172486-174668 3.23e-01 100 chrXIII:131612-132069 3.69e-07 35_[+1(5.87e-11)]_36 chrXII:581990-584876 7.32e-01 100 chrVII:824349-827404 1.79e-02 43_[-3(7.50e-06)]_36 chrXI:100580-107008 9.93e-01 100 chrXI:519443-521150 2.58e-01 100 chrXII:1051953-1052201 2.19e-10 44_[+1(4.44e-13)]_27 chrII:411444-415258 2.57e-02 34_[-3(6.04e-06)]_45 chrIX:325572-326059 8.74e-06 25_[-1(5.05e-10)]_46 chrXII:459623-460065 3.23e-05 19_[+3(5.07e-09)]_60 chrIV:561258-561994 2.04e-01 100 chrII:80916-83901 5.25e-01 100 chrVI:180713-181243 1.70e-07 46_[+1(3.32e-11)]_25 chrXVI:460758-461310 3.22e-01 100 chrV:305822-307460 1.25e-01 100 chrXIV:626029-626915 7.48e-01 100 chrVII:648770-650456 2.00e-01 100 chrXII:426934-427448 2.55e-05 32_[-1(1.48e-09)]_39 chrXVI:378715-378981 9.72e-03 70_[+3(3.80e-05)]_9 chrXII:951103-953891 1.76e-01 100 chrXV:1011402-1012928 4.76e-01 100 chrVII:869301-871161 5.41e-03 78_[+3(2.39e-06)]_1 chrV:487012-487596 8.76e-01 100 chrX:647402-647502 9.57e-03 1_[-3(1.68e-05)]_78 chrXVI:121932-125772 2.55e-01 100 chrVII:640906-642086 2.52e-03 42_[-1(1.91e-06)]_29 chrXV:228098-228527 6.48e-06 69_[-2(3.44e-10)]_1 chrVII:516808-519054 2.90e-01 100 chrXVI:303076-304481 4.31e-01 100 chrXII:579234-581414 8.69e-01 100 chrXVI:794992-796173 7.45e-01 100 chrVIII:115855-116288 7.17e-04 7_[-3(9.63e-07)]_72 chrV:153902-154123 1.64e-01 100 chrXII:47595-48511 1.98e-01 100 chrXVI:577072-580888 5.70e-01 100 chrXIII:62540-67232 9.91e-01 100 chrXII:296465-299594 8.49e-01 100 chrXVI:748796-751286 2.20e-02 39_[+3(5.41e-06)]_40 chrVII:828379-828969 7.70e-01 100 chrXVI:886172-887633 4.98e-01 100 chrXIII:83580-86031 9.27e-03 51_[-3(2.70e-06)]_28 chrXV:113495-113872 4.67e-01 100 chrXIII:161742-164295 1.72e-02 100 chrIV:1012537-1013509 5.74e-03 36_[-3(7.86e-05)]_17_[-3(1.64e-06)]_\ 5 chrV:130824-131342 6.41e-07 49_[+1(6.08e-10)]_22 chrV:396221-396529 8.58e-01 100 chrIV:1359445-1361340 6.45e-01 100 chrXVI:915799-917956 3.73e-01 100 chrXV:619623-621510 1.10e-02 24_[-2(4.09e-06)]_46 chrII:143692-145460 1.64e-01 100 chrIV:913980-914720 3.54e-01 100 chrXV:503044-504266 4.87e-01 100 chrVII:439056-440058 5.90e-01 100 chrXIII:651322-652918 3.64e-01 100 chrVII:901555-901722 6.10e-01 100 chrIV:128979-130955 7.43e-02 100 chrIX:257404-258042 2.34e-01 100 chrVII:205192-205727 8.56e-01 100 chrXVI:88768-93099 3.50e-01 100 chrXIII:754470-755788 2.58e-01 100 chrII:88924-89433 5.96e-02 33_[-3(1.68e-05)]_46 chrX:235490-235590 1.22e-01 100 chrVII:319239-320105 1.35e-01 100 chrX:139098-139198 8.16e-01 100 chrII:592254-592615 4.65e-01 100 chrXII:198668-199791 6.50e-01 100 chrII:304319-305639 3.05e-04 18_[+3(3.49e-07)]_61 chrXIII:663372-664476 6.21e-01 100 chrXIV:413557-417256 6.88e-01 100 chrIV:489678-491216 7.28e-01 100 chrVII:187142-189848 7.92e-01 100 chrII:452800-453871 4.89e-02 100 chrXI:158233-159656 5.88e-01 100 chrIX:68245-68478 2.28e-03 57_[+3(5.47e-07)]_22 chrXI:337672-338113 7.11e-02 42_[+3(5.74e-05)]_37 chrXV:718072-719800 6.73e-01 100 chrX:115837-115937 6.97e-01 100 chrXIII:626153-627297 2.69e-01 100 chrVII:88145-89388 5.58e-01 100 chrX:233710-233810 2.55e-01 100 chrX:519371-519471 7.05e-01 100 chrVII:726942-728930 8.29e-01 100 chrXIII:892758-895182 7.40e-01 100 chrVII:662539-666040 1.00e+00 100 chrXIII:504705-505163 1.72e-04 11_[-2(3.90e-08)]_59 chrXII:1028229-1028539 2.76e-03 2_[+3(5.47e-07)]_77 chrVII:876177-877923 1.07e-01 100 chrII:36966-38706 2.33e-01 100 chrIV:472682-473490 2.75e-01 100 chrVIII:141710-143076 9.55e-01 100 chrXVI:377819-378459 7.64e-01 100 chrXII:366064-366481 5.19e-01 100 chrVII:730976-731389 6.97e-13 5_[-2(3.44e-10)]_13_[-1(5.54e-10)]_\ 23 chrXIII:288241-290075 5.19e-01 100 chrV:67066-68804 2.15e-01 100 chrV:443119-443330 7.91e-17 28_[+1(4.44e-13)]_13_[+2(2.41e-11)] chrIV:589803-591136 5.30e-02 100 chrXII:253910-255218 2.97e-01 100 chrIV:236150-238362 6.93e-01 100 chrVII:779408-779697 3.59e-02 28_[-3(2.67e-05)]_51 chrX:140630-140730 6.65e-01 100 chrXV:87434-89057 1.37e-01 100 chrVIII:290791-292372 2.38e-01 100 chrXV:161171-161344 8.98e-01 100 chrXI:126149-127203 3.27e-01 100 chrXIV:96034-96453 3.87e-07 48_[+1(2.32e-10)]_23 chrII:45026-45307 1.21e-01 9_[-3(9.86e-05)]_70 chrXIV:499631-500750 4.43e-01 100 chrVIII:505863-506150 9.07e-01 100 chrXIV:359623-361214 8.16e-01 100 chrVIII:462853-463930 1.83e-02 56_[-3(1.39e-05)]_23 chrIX:388943-392147 2.30e-01 100 chrXII:819323-820393 3.86e-02 100 chrXVI:829951-830621 3.01e-02 63_[+3(6.73e-05)]_16 chrIX:156852-159279 5.60e-01 100 chrVII:747673-749874 2.13e-01 100 chrXVI:802708-804428 4.37e-01 100 chrXV:677499-679086 2.78e-03 54_[+3(3.49e-07)]_25 chrX:414796-414896 1.18e-10 22_[-1(1.00e-13)]_49 chrXV:79800-80108 3.61e-02 66_[+3(2.03e-05)]_13 chrVIII:411000-411740 5.80e-02 68_[-3(6.22e-05)]_11 chrXII:448558-448930 1.55e-02 60_[+3(3.42e-06)]_19 chrXII:282826-283961 7.16e-01 100 chrVII:440574-441143 5.54e-01 100 chrXII:713165-713609 4.57e-01 100 chrXI:311527-313598 1.57e-01 100 chrXVI:164532-165754 5.49e-04 33_[-1(5.48e-05)]_38 chrIII:123502-123778 1.48e-03 27_[+2(1.33e-06)]_43 chrII:290322-291689 9.01e-03 53_[+3(2.70e-06)]_26 chrX:90891-90991 9.05e-03 32_[-3(2.70e-06)]_47 chrIV:927735-930141 2.46e-01 100 chrVIII:381519-383300 5.38e-02 42_[+3(6.22e-05)]_37 chrXIV:720688-723176 5.24e-04 34_[-3(1.56e-07)]_45 chrI:81941-82242 1.89e-01 100 chrXII:1037564-1041345 7.76e-01 100 chrII:162531-163904 3.65e-01 100 chrVI:163129-164804 4.02e-01 100 chrXI:259135-259936 6.86e-01 100 chrIX:174889-175371 6.71e-01 100 chrII:254902-255680 5.47e-02 100 chrII:409297-410791 4.05e-02 57_[+2(6.45e-05)]_13 chrXIV:452745-456218 2.15e-03 74_[-3(6.04e-06)]_5 chrXVI:445742-450185 9.96e-01 100 chrXII:784174-784460 5.24e-03 69_[-1(1.25e-05)]_2 chrIV:655524-657318 8.04e-01 100 chrXII:81808-83723 3.75e-01 100 chrXV:250949-252349 7.74e-01 100 chrXII:796423-796821 1.77e-02 74_[-3(2.92e-05)]_5 chrXII:780206-781847 7.44e-03 4_[-3(9.63e-07)]_75 chrII:680371-682266 1.37e-02 54_[-3(4.84e-06)]_25 chrXI:219646-220070 8.59e-01 100 chrXV:226599-226802 3.40e-04 [+2(6.41e-08)]_70 chrXIII:511342-512077 1.65e-03 6_[-1(7.97e-05)]_30_[+2(9.54e-05)]_\ 5 chrIV:541188-541875 8.79e-03 3_[-3(7.28e-05)]_48_[-3(2.23e-05)]_\ 7 chrII:134026-135121 2.23e-01 100 chrXVI:75447-76648 3.82e-02 52_[-3(4.13e-05)]_27 chrI:24077-24318 4.95e-01 100 chrXIII:690198-691220 9.00e-01 100 chrIX:255101-257113 2.44e-02 55_[-3(8.33e-06)]_24 chrII:36259-36551 1.58e-03 43_[-2(4.63e-07)]_27 chrIV:187632-190051 6.95e-03 44_[+3(1.26e-06)]_35 chrXII:823632-826174 3.08e-01 100 chrV:431037-431928 9.12e-01 100 chrIV:359381-359752 3.73e-06 61_[-2(3.44e-10)]_9 chrV:510561-512374 2.18e-01 100 chrXV:738497-740491 8.06e-01 100 chrXI:457934-459029 9.40e-01 100 chrI:106213-108194 8.23e-02 100 chrXIII:91635-92080 3.08e-01 100 chrV:298952-302052 3.47e-01 100 chrXIII:300634-302433 3.52e-01 100 chrXIII:849583-851347 5.36e-01 100 chrIII:163481-163851 5.18e-01 100 chrXI:107389-109029 2.13e-01 100 chrVIII:229753-231009 9.37e-01 100 chrIX:370261-370567 2.86e-02 26_[-3(1.53e-05)]_53 chrXV:409137-409931 1.51e-03 34_[-3(4.07e-07)]_45 chrV:78052-79967 8.03e-01 100 chrXVI:731941-732283 2.22e-01 100 chrVII:533809-535166 1.37e-01 42_[-3(6.22e-05)]_37 chrIV:308060-310115 7.29e-01 100 chrVIII:443948-445498 2.38e-01 100 chrX:381433-381533 2.45e-01 100 chrXI:789-1089 9.75e-01 100 chrIV:1449801-1451124 2.94e-01 100 chrXII:798734-800811 7.12e-01 100 chrXII:656846-657175 7.17e-07 15_[+2(3.61e-09)]_55 chrVII:706955-707184 2.66e-01 100 chrXVI:699925-700702 1.20e-03 18_[+3(1.32e-07)]_61 chrXVI:302643-302901 3.94e-01 100 chrX:439613-439713 9.17e-01 100 chrXII:837648-839397 7.92e-01 100 chrXV:444636-446254 5.55e-01 100 chrIV:1095119-1095670 9.06e-06 26_[+1(8.48e-09)]_45 chrXVI:55899-56340 2.00e-02 49_[-1(5.17e-05)]_22 chrIV:354621-354791 5.90e-02 11_[+3(2.67e-05)]_68 chrXII:845040-846028 1.10e-03 29_[-3(1.03e-05)]_50 chrVI:52940-54413 1.93e-01 100 chrXVI:550242-551374 1.32e-03 24_[+3(1.10e-06)]_55 chrXIII:454247-455625 8.33e-01 100 chrII:284157-287570 2.54e-01 100 chrXVI:581878-582315 8.75e-14 16_[-2(5.80e-07)]_12_[-1(1.00e-13)]_\ 13 chrIX:98023-99475 1.15e-01 100 chrXII:498529-500021 1.33e-01 100 chrXIII:115487-118757 8.00e-01 100 chrIII:177156-178683 4.69e-01 100 chrXVI:133167-135822 8.98e-02 100 chrIX:231274-232349 7.17e-02 100 chrII:415546-415826 9.10e-01 100 chrXIII:698726-700710 8.87e-01 100 chrII:591523-591819 1.68e-02 49_[-3(1.13e-05)]_30 chrX:517665-517765 1.54e-10 4_[+1(1.83e-08)]_11_[+2(9.54e-10)]_\ 26 chrXIII:887044-892074 1.48e-01 100 chrI:205813-206773 9.07e-04 6_[+2(3.11e-06)]_64 chrXII:48754-49105 1.21e-01 100 chrVII:310512-312278 8.36e-01 100 chrIV:427564-428732 5.45e-01 100 chrIII:90797-91066 3.62e-01 100 chrI:64550-67660 8.31e-02 100 chrIV:832797-835144 3.73e-01 100 chrV:396788-398071 3.76e-01 100 chrIX:197416-198001 5.95e-03 8_[+3(1.64e-06)]_71 chrVII:307763-308785 9.79e-01 100 chrXIV:282331-283777 4.69e-02 46_[+3(2.44e-05)]_33 chrIV:1013766-1013929 2.22e-01 100 chrXVI:297616-298758 6.48e-02 38_[+3(2.23e-05)]_41 chrVII:100500-106127 6.64e-01 100 chrXII:605244-605595 3.27e-05 32_[+2(2.87e-08)]_38 chrXII:257609-259419 3.36e-01 100 chrXV:587352-589811 3.86e-01 100 chrII:491246-492417 2.70e-01 100 chrXIV:585497-586574 4.09e-02 77_[-3(3.19e-05)]_2 chrXV:1004062-1004987 5.67e-03 2_[+3(1.26e-06)]_77 chrV:378526-381868 1.67e-01 100 chrXII:720337-721174 9.89e-01 100 chrVII:723021-725109 1.64e-02 57_[+1(5.64e-05)]_14 chrXII:132302-134244 4.86e-01 100 chrVIII:475526-475892 1.44e-07 47_[+1(3.32e-11)]_24 chrXI:326076-327599 3.55e-01 100 chrIV:839287-841531 9.00e-01 100 chrV:281951-284216 3.74e-01 100 chrVIII:62623-62946 9.03e-05 62_[-1(3.30e-08)]_9 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chrVII:970366-973919 1.74e-01 100 chrXIV:632513-632821 4.24e-06 25_[-1(5.54e-10)]_46 chrIV:555388-556432 8.70e-01 100 chrVIII:119728-121628 3.09e-01 100 chrVIII:361995-363395 6.67e-01 100 chrXIII:362955-364422 5.82e-01 100 chrX:211833-211933 9.41e-01 100 chrXIII:701874-703504 6.84e-01 100 chrX:355212-355312 4.42e-11 2_[-1(5.87e-11)]_12_[-2(7.76e-08)]_\ 27 chrIV:520700-521101 9.72e-01 100 chrXV:482985-485873 1.52e-01 24_[-3(6.73e-05)]_55 chrIV:434039-435102 4.05e-02 47_[+3(2.23e-05)]_32 chrV:61153-62115 5.28e-01 100 chrXIV:493764-495018 9.80e-01 100 chrXVI:689374-689808 3.44e-05 24_[-2(8.46e-09)]_46 chrXIII:18643-20287 7.92e-01 100 chrVIII:296948-297215 2.36e-01 100 chrXII:962417-962618 6.02e-01 100 chrIV:1121099-1123901 7.48e-01 100 chrVII:798647-800274 9.35e-01 100 chrVII:183022-184647 5.43e-01 100 chrXIII:123021-124165 6.84e-01 100 chrIX:68678-69982 3.57e-02 3_[-3(2.67e-05)]_76 chrXVI:136353-136746 2.59e-01 100 chrXIII:126137-128366 1.35e-02 59_[+3(2.44e-05)]_20 chrVII:287243-287664 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1_[-1(1.83e-08)]_10_[+3(1.85e-05)]_\ 39 chrV:269210-269934 6.74e-01 100 chrIX:27325-28512 3.48e-02 31_[+3(2.23e-05)]_48 chrVI:101390-102194 5.18e-02 23_[+1(1.86e-05)]_48 chrIV:768330-768990 7.26e-02 100 chrXIII:259055-259461 3.10e-05 [+2(3.18e-08)]_70 chrI:27192-27660 9.91e-02 100 chrVII:736203-737730 7.52e-01 100 chrV:311755-312287 5.84e-08 52_[+1(1.84e-11)]_19 chrXIII:557419-558311 6.63e-01 100 chrXVI:153635-155589 5.40e-01 100 chrIV:1351902-1353060 7.54e-11 35_[+1(1.00e-13)]_36 chrXI:333954-334951 2.88e-01 100 chrVII:39372-41271 5.87e-01 100 chrXV:649618-652455 6.68e-01 100 chrVI:137290-137756 1.20e-12 13_[+1(5.54e-10)]_13_[+2(3.44e-10)]_\ 15 chrVI:221800-222031 2.85e-02 9_[-3(1.39e-05)]_70 chrX:442402-442502 1.20e-01 100 chrXVI:679766-680964 4.81e-03 100 chrXI:556085-556350 9.77e-02 100 chrV:138494-140860 2.47e-01 100 chrXIV:495231-495767 1.70e-02 100 chrXII:867398-869474 5.92e-03 27_[-3(7.29e-07)]_52 chrXI:163305-164386 5.79e-01 100 chrVII:148024-149493 4.42e-02 68_[+3(1.13e-05)]_11 chrXVI:771587-773509 3.35e-01 100 chrXIII:498856-500693 4.29e-01 100 chrXI:307926-308411 2.44e-12 26_[+1(1.39e-10)]_13_[+2(2.46e-09)]_\ 2 chrV:249815-250515 9.78e-04 35_[+1(2.82e-05)]_36 chrXVI:310552-313056 2.29e-01 100 chrXIV:725755-726340 8.14e-02 56_[+3(7.86e-05)]_23 chrIV:305446-307775 2.22e-01 100 chrV:135215-136030 5.12e-01 100 chrXVI:282081-283311 1.87e-01 100 chrVII:703538-706114 7.82e-01 100 chrXIV:512653-512960 4.85e-01 100 chrIV:508354-509566 2.74e-01 100 chrV:362722-363288 6.00e-01 100 chrVI:167257-167634 1.71e-03 42_[-2(4.63e-07)]_28 chrIX:316744-318280 2.14e-01 100 chrXVI:451569-453274 2.95e-01 100 chrXVI:371072-373272 6.16e-01 100 chrXII:793759-796150 9.85e-01 100 chrVIII:451242-453096 4.47e-01 100 chrXII:625171-625673 2.18e-04 22_[-2(1.09e-06)]_48 chrXIII:420383-420843 2.39e-12 25_[+1(1.39e-10)]_13_[+2(2.46e-09)]_\ 3 chrXI:74463-74826 1.89e-07 30_[-2(3.44e-10)]_40 chrXII:628225-628992 8.95e-01 100 chrXV:882721-884387 8.13e-01 100 chrIV:1114120-1116311 3.75e-03 69_[+3(2.11e-06)]_10 chrXIV:442876-444217 9.45e-01 100 chrXIV:234417-235739 8.69e-02 100 chrVIII:487490-488004 4.51e-01 100 chrV:99876-100270 8.23e-01 100 chrXV:979764-981044 6.08e-01 100 chrIV:437564-437975 2.11e-04 53_[-2(3.18e-08)]_17 chrVII:906879-908903 1.87e-01 100 chrXII:695053-696724 7.01e-01 100 chrII:529374-531824 3.16e-03 60_[-3(3.49e-07)]_19 chrIV:1200758-1201961 4.24e-01 100 chrVII:281314-283554 6.73e-01 100 chrIV:720582-721561 3.17e-01 100 chrXI:517809-518060 9.88e-01 100 chrIV:220982-222356 6.20e-02 100 chrXIII:768195-768417 7.59e-01 100 chrVII:930881-931137 1.35e-04 33_[+2(6.41e-08)]_37 chrXIII:759890-763107 3.65e-01 100 chrV:53572-54074 6.58e-01 100 chrXV:571665-572150 8.84e-01 100 chrIV:194287-197424 6.06e-01 100 chrVIII:74991-76299 8.98e-01 100 chrII:75753-80018 3.76e-01 100 chrXI:379511-379926 3.86e-12 12_[-2(2.46e-09)]_13_[-1(1.39e-10)]_\ 16 chrXI:490733-491211 2.44e-05 46_[-2(2.08e-08)]_24 chrXII:897746-899740 2.82e-01 100 chrVII:56547-59082 9.99e-01 100 chrIV:579089-580733 4.13e-01 100 chrXI:488226-488983 1.44e-01 29_[-3(6.22e-05)]_50 chrVII:255153-255666 9.00e-01 100 chrI:87668-91587 9.74e-01 100 chrXV:539751-543937 4.74e-01 100 chrVII:881251-883945 9.34e-01 100 chrX:424302-424402 2.92e-07 29_[+2(1.14e-10)]_41 chrXV:758942-759487 3.54e-01 100 chrII:578820-581207 9.38e-01 100 chrIX:118800-122158 5.95e-01 100 chrVII:345888-346635 5.06e-01 100 chrIV:1236500-1238484 9.95e-01 100 chrIV:526935-527567 4.90e-01 100 chrXV:900079-901190 4.46e-01 100 chrII:604176-606042 2.83e-01 100 chrXII:734610-737299 7.04e-01 100 chrXII:122081-123384 3.96e-01 100 chrXIV:253161-254165 3.16e-01 100 chrXIII:554293-556441 4.51e-02 13_[+2(9.23e-05)]_57 chrX:378189-378289 1.62e-05 41_[-2(2.46e-09)]_29 chrXVI:376152-377386 6.92e-01 100 chrIX:393209-393676 7.96e-02 100 chrXVI:718428-719394 2.96e-01 100 chrIV:1462290-1465192 2.43e-01 100 chrXVI:879268-880516 4.31e-01 100 chrV:176900-177388 1.75e-06 46_[-1(1.25e-10)]_25 chrXIV:508415-509584 5.89e-01 100 chrIII:308670-308925 3.32e-02 100 chrXI:513227-513504 3.30e-10 17_[+1(1.48e-09)]_11_[+2(7.76e-08)]_\ 13 chrIII:295375-295896 7.99e-01 100 chrXIV:88058-89742 8.28e-01 100 chrVII:531469-531771 1.09e-04 40_[-2(7.76e-08)]_30 chrIX:212776-215294 2.49e-02 16_[+2(6.66e-05)]_54 chrVII:260410-261741 7.82e-03 100 chrX:542793-542893 9.44e-04 43_[+2(4.63e-07)]_27 chrVIII:394015-395987 4.01e-01 100 chrXV:624353-624766 6.20e-01 100 chrIX:96886-97542 7.43e-02 25_[+3(7.86e-05)]_54 chrIV:1175606-1176265 9.60e-01 100 chrXIV:568059-568502 4.14e-02 79_[-3(9.25e-06)] chrVI:92780-94225 7.90e-02 100 chrIV:176878-178406 2.36e-01 100 chrII:89667-89941 2.19e-02 76_[-3(1.25e-05)]_3 chrIV:1466133-1468358 3.97e-01 100 chrVI:75307-76344 2.30e-01 100 chrIV:1169905-1170377 8.68e-01 100 chrVII:277510-279909 3.37e-01 100 chrXV:1027765-1031166 1.46e-02 100 chrI:24656-25598 7.30e-02 100 chrIV:170059-170256 1.27e-02 26_[-3(3.04e-06)]_53 chrXVI:64841-66321 5.73e-01 100 chrX:156307-156407 7.60e-01 100 chrXV:904858-906324 2.14e-02 47_[-3(1.03e-05)]_32 chrVII:110408-110776 9.44e-01 100 chrV:354802-355199 1.80e-06 25_[-1(1.25e-10)]_46 chrXIV:289656-292264 8.87e-01 100 chrXVI:208629-210435 9.85e-01 100 chrVII:254192-254711 8.58e-01 100 chrII:59570-60445 1.96e-01 100 chrXIV:108074-109252 7.61e-01 100 chrIV:45157-47218 7.44e-01 100 chrVIII:274181-276320 7.54e-01 100 chrXIII:23928-25554 3.10e-01 100 chrXV:464305-464583 4.08e-05 56_[-2(5.81e-08)]_14 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************