******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--TEC1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:300079-300253 1.0000 100 chrVIII:212122-212364 1.0000 100 chrXIV:738622-739619 1.0000 100 chrVII:147991-150623 1.0000 100 chrXI:219528-220112 1.0000 100 chrI:202388-203041 1.0000 100 chrIV:1359210-1361211 1.0000 100 chrXVI:810583-811311 1.0000 100 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chrVIII:115878-116299 1.0000 100 chrV:469237-470225 1.0000 100 chrVII:706931-707187 1.0000 100 chrXI:379358-379919 1.0000 100 chrXIV:585449-586602 1.0000 100 chrVIII:147618-148756 1.0000 100 chrXI:108712-110669 1.0000 100 chrV:443051-443340 1.0000 100 chrIX:386335-386986 1.0000 100 chrVII:856528-857653 1.0000 100 chrXIII:837743-838220 1.0000 100 chrVII:310377-312660 1.0000 100 chrXIV:602057-602563 1.0000 100 chrXIV:330410-332398 1.0000 100 chrVI:157906-158654 1.0000 100 chrXI:74434-74847 1.0000 100 chrXIV:771790-772304 1.0000 100 chrXI:162442-162927 1.0000 100 chrXV:520677-521047 1.0000 100 chrXI:261059-262446 1.0000 100 chrXV:903921-905702 1.0000 100 chrX:607156-607256 1.0000 100 chrXV:383005-383486 1.0000 100 chrX:197123-197223 1.0000 100 chrXII:92405-92720 1.0000 100 chrXV:832307-832810 1.0000 100 chrXVI:571654-572507 1.0000 100 chrI:71694-73647 1.0000 100 chrXII:975805-976102 1.0000 100 chrXIV:560103-560785 1.0000 100 chrIX:174855-175383 1.0000 100 chrIV:340493-341689 1.0000 100 chrVIII:149000-149224 1.0000 100 chrX:617696-617796 1.0000 100 chrXVI:378678-378981 1.0000 100 chrXVI:718411-719822 1.0000 100 chrIV:357216-357693 1.0000 100 chrVII:730959-731453 1.0000 100 chrVII:554912-557561 1.0000 100 chrV:441776-442639 1.0000 100 chrXV:160349-160742 1.0000 100 chrII:196787-196954 1.0000 100 chrXII:370500-370970 1.0000 100 chrX:125445-125545 1.0000 100 chrXVI:860112-860674 1.0000 100 chrIV:220579-222374 1.0000 100 chrIV:1487614-1490449 1.0000 100 chrIV:365967-366391 1.0000 100 chrII:234967-235986 1.0000 100 chrVIII:237748-238086 1.0000 100 chrXVI:731603-732333 1.0000 100 chrXVI:193060-193914 1.0000 100 chrXI:158189-159636 1.0000 100 chrXIII:753007-755322 1.0000 100 chrII:36238-37618 1.0000 100 chrIV:520193-521168 1.0000 100 chrVII:122026-122525 1.0000 100 chrXII:448468-449059 1.0000 100 chrIX:254216-254555 1.0000 100 chrX:424298-424398 1.0000 100 chrVI:167235-167700 1.0000 100 chrIV:359268-359847 1.0000 100 chrIV:600672-602410 1.0000 100 chrXIII:887018-889395 1.0000 100 chrII:405664-406394 1.0000 100 chrIV:538907-539350 1.0000 100 chrXV:978711-981320 1.0000 100 chrII:254819-255759 1.0000 100 chrIV:491453-492651 1.0000 100 chrXII:874879-875913 1.0000 100 chrIX:336118-336645 1.0000 100 chrXIII:378833-379635 1.0000 100 chrVIII:272696-275741 1.0000 100 chrIV:216625-218073 1.0000 100 chrXIII:549882-553147 1.0000 100 chrVIII:411004-411682 1.0000 100 chrIV:1345030-1345947 1.0000 100 chrIII:141793-143063 1.0000 100 chrIV:1080147-1080854 1.0000 100 chrXII:837662-839420 1.0000 100 chrV:363636-364163 1.0000 100 chrIV:322170-323569 1.0000 100 chrXI:457890-459021 1.0000 100 chrXIV:783819-784311 1.0000 100 chrX:414696-414796 1.0000 100 chrIV:945757-946631 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--TEC1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--TEC1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--TEC1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.304 C 0.196 G 0.196 T 0.304 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--TEC1/background): A 0.311 C 0.189 G 0.189 T 0.311 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAWYGCYCMMDVBSGGRWTCGAACC MEME-1 width = 29 sites = 80 llr = 1475 E-value = 2.8e-285 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAWYGCYCMMDVBSGGRWTCGAACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8989775112113343:13:64::1aa:: pos.-specific C 1:1::::4:54544:443:::1:8:::a8 probability G 111:111:72122232367a42::a:::: matrix T 111122452141213:2::::3a3:1::2 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 * * * * Relative 1.4 * ****** Entropy 1.2 *** ******* (26.6 bits) 1.0 * * * **** ******* 0.7 **** * **** ******* 0.5 ****** *** * ****** ******* 0.2 ********************* ******* 0.0 ----------------------------- Multilevel AAAAAAATGCCCCCACCGGGAATCGAACC consensus TC ATGAAGAGCA GT T sequence G TGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWYGCYCMMDVBSGGRWTCGAACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrVII:930714-931150 + 64 1.30e-13 AAAAGAAAAG AAAAAAATGCGCAAGCCCGGAATCGAACC GGGGGCCC chrV:550918-551598 + 70 2.23e-12 ACGATTTTCA AAAAAATTGGTCTCTAGCGGGATCGAACC GC chrIX:336118-336645 + 11 6.62e-12 AGTTATGGTA AAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrII:405664-406394 - 31 6.62e-12 GGAGTAGCCA AAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrXIII:463423-463860 - 13 6.62e-12 TGGTCTGATA AAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrVII:544254-544877 + 55 6.62e-12 CAGAAAAAGA AAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrXV:571604-572409 - 52 6.62e-12 CAAATCAGCA AAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrXIV:569628-570049 + 72 8.91e-12 AATGCAAAAA AAAAGAATGGTCTCTAGCGGGATCGAACC chrXII:1051906-1052211 + 56 8.91e-12 TAAAGTAAAA AAAATAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrV:443051-443340 + 50 1.03e-11 GATTTTCAAA AAAAATATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrXVI:581838-582444 - 22 2.10e-11 CATGCAATAA AAAAGAAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrXVI:209992-210460 + 9 2.77e-11 GAAGCAAA AAGAAAACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrII:266176-266738 - 22 2.77e-11 TTCAGTATTC AAAAAAATGCTTCCAATCGGATTTGAACC GATGATCTCC chrXIII:480387-480877 + 32 3.18e-11 GAATCTTCAA AAAAAGAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrX:115585-115685 + 58 3.63e-11 TAATCACATA AAAAATACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrIV:1016974-1017499 + 14 4.15e-11 AGAAAATAAA AAAGAAACTCCGAAGCGGGGAGTCGAACC CCGGTCTCCA chrIX:299969-300509 + 32 4.15e-11 GAAAATGGTA AAAAGATAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrVII:185480-185937 + 49 4.15e-11 TTGAGCCTAA AAAAGATAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrIX:174855-175383 - 13 5.41e-11 TTGCCGAAGA AAAAAATTGCTTCCAATCGGATTTGAACC GATGATCTCC chrIX:325407-326149 - 71 5.41e-11 A AAAAAATTGCTTCCAATCGGATTTGAACC GATGATCTCC chrXII:426904-427548 - 6 5.41e-11 AGAAGCTTAA AAAAATTCTCCGCGACGGGGAATTGAACC CCGAT chrXII:214667-215061 + 62 5.41e-11 TAAAAGTAAA AAATAAATGGACGCAACCGGAATCGAACC GATGACCTCT chrXIII:747652-748165 + 27 7.01e-11 AAAAAAATAC TAAAAAACACTCACGATGGGGGTCGAACC CATAATCTTC chrVIII:134041-134687 - 57 9.05e-11 TTCATTTTAG CAAAAAAAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrVII:736184-736661 - 18 9.05e-11 ATTATTTAAA AAAACAACACTCACGATGGGGGTCGAACC CATAATCTTC chrXIV:632499-632825 - 39 9.05e-11 TGAAATAAGA AAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrIII:168077-168564 + 24 9.05e-11 AATCTGTATT CAAAAAAAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrV:249771-250897 - 52 1.32e-10 GTAAAAATGA ATAAAAAAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrXV:594058-594628 + 54 1.49e-10 TGTTTTGCAA AAACAGATGCGCAAGCCGGGAATCGAACC CGGGCCTCAT chrV:354798-355217 - 27 2.14e-10 ATGATGTCAA AAAAGTACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrX:374187-374287 + 20 2.14e-10 TCACGGAAGA AACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrX:355204-355304 - 3 2.14e-10 TCACGGAAGA AACAAAGCACTCACGATGGGGGTCGAACC CA chrIV:568531-569331 - 51 2.14e-10 TCACGGAAGA AACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrV:176880-177453 - 33 2.14e-10 TAGCCATCAA AAAAGTACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrXIII:131482-132120 + 67 2.14e-10 AAAAAGAAGA AACAAAGCACTCACGATGGGGGTCGAACC CATAA chrXIII:586368-586895 + 48 2.41e-10 GGATGTCTTC AAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrXIII:372188-372771 + 9 2.41e-10 AAAGTGCT AAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrVIII:115878-116299 + 62 3.43e-10 GAAATCAATG CAAAAAATGCTTCCAATCGGATTTGAACC GATGATCTCC chrXIV:95998-96459 + 56 3.43e-10 AATGCCATCA AAAAATTTGAGCGGTACGAGAATCGAACC CGTGTCCCCA chrIV:619645-620262 + 59 3.85e-10 AAAAATGTAT AAAAAATCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrII:226972-227341 - 29 3.85e-10 TACTGTCCAA AAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrV:438491-438984 - 65 4.31e-10 TCGAAAA AAAAAATTGATTTCGCCCAGGATCGAACT GGGGACGTTC chrIV:802580-802836 + 66 7.55e-10 AGAGTAAAAA TAAAAAGAGGTCCTACCCGGATTCGAACC GGGGTT chrVII:541714-542172 - 7 8.42e-10 AGGTAAGAAA AAGAACACTCCGATACGGGGAGTCGAACC CCGGTC chrVII:730959-731453 - 33 9.39e-10 TCATTTCAAG CAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrX:197123-197223 + 32 9.39e-10 TGAGAACAAA AAGAAATTGGACGAGTCCGGAATCGAACC GGAGACCTCT chrVIII:145378-147089 + 52 1.05e-09 GTAATAACAA AAAAGATTGGACGAGTCCGGAATCGAACC GGAGACCTCT chrVII:774130-774702 - 34 1.16e-09 TTAAAAGTAA AAAAATTTGGACGAGTCCGGAATCGAACC GGAGACCTCT chrXI:578735-579320 - 62 1.16e-09 TCTAAAAAAG TAAAGAACTCCTCATAGGGGGCTCGAACC CCTGACATTT chrIV:884292-884645 - 54 1.77e-09 GAAAAAAAAA GAGAAAGTGCTCGAGGTGGGGTTTGAACC CACGACGGTC chrXI:490755-491357 - 13 1.96e-09 ATAAAAGTAA AAAAATTCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrVII:823360-823721 - 44 2.18e-09 ATGTAATCTT CAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrXII:732014-732305 - 60 2.95e-09 GAAAAAGCAA AAAATAATGAGAGCTAAGGGATTCGAACC CTTGCATCCG chrXIII:420331-420859 + 36 2.95e-09 AACGGCTGAG ATAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrVII:700387-701153 - 15 2.95e-09 TAGATTCAAA AAAATATTGATACCCGCGGGGTTTGAACC CGCGCCTCCG chrXII:592328-592718 + 39 2.95e-09 CAAAAAACAA AAAATAATGAGAGCTAAGGGATTCGAACC CTTGCATCCG chrX:422705-422805 - 40 2.95e-09 CACAAAAAAA GAAAATGTGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrVI:226446-226947 + 35 4.37e-09 AGAGAAAAAA AGAGATAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrVIII:132720-133351 + 34 5.30e-09 TTTTTTAAAA AAATTATCGACAACTGCAGGACTCGAACC TGCGCGGGCA chrIV:1175589-1176127 - 72 5.83e-09 . GCAAAAATGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrIV:83356-83812 - 63 6.41e-09 GAAAAAAAA TTAAACTTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrXV:464285-464781 - 47 7.04e-09 AATAATCAAA AATAAAAGGGGCGAGCTGGGAATTGAACC CAGGGCCTCT chrXVI:689364-689864 - 61 7.73e-09 AATTTCAAAA AATAATACGACACCAGCAGGATTTGAACC AGCGCGGGCA chrIII:227771-228227 - 72 1.22e-08 . AATTAAACGACACCAGCAGGATTTGAACC AGCGCGGGCA chrX:538524-538624 - 13 1.60e-08 AAAAAAAAAA TAATCAACGTTCCGTACGGGACTCGAACC CGCAGTCTTC chrXVI:744072-744647 - 25 1.60e-08 CTTTAGGGAA AAAATTTTGCCACCTGTCAGAATTGAACT AACGACCTTT chrXV:710071-710474 - 29 2.08e-08 ATCAAAGGTA AAAAAATTAGCGCCGCTCGGTTTCGATCC GAGGACATCA chrIII:90787-91096 - 60 2.26e-08 GTTGAGGAAA AAAATAATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrII:9466-9818 - 53 7.13e-08 ATCATCAAAA AAAATACTGAAGGATGCGAGGTTCGAACT CGCGCGGACA chrVIII:475504-475903 + 46 7.71e-08 AAAAATCGAT GTTAAAATGTTCCAACCGAGGATCGAACT CGGGACCTTT chrXII:92405-92720 - 52 1.41e-07 CTGTTTAGTC AGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCAC chrVI:101133-101731 - 10 1.41e-07 CTGTTTATTC AGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCA chrVIII:388658-389219 + 63 1.41e-07 CTGTTTAGGC AGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCA chrXIII:195932-196297 + 62 1.41e-07 CTGTTTAATC AGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCAC chrIV:519660-519912 - 69 1.89e-07 AAT AAGTTATTGAAGGATGCGAGGTTCGAACT CGCGCGGACA chrXVI:622275-622849 + 21 2.18e-07 CAGGTCGAAA AAATAAATGCGAATTCTGTGGATCGAACA CAGGACCTCC chrXIII:837743-838220 - 64 5.65e-07 AAAAGTAA AAAAATATCTCCCGGGGGCGAGTCGAACG CCCGATCTCA chrIII:149733-150252 - 28 9.96e-07 CAGTTCAAAA AATTTAATAGCGCCGCTCGGTTTCGATCC GAGGACATCA chrXVI:559967-560462 + 27 1.35e-06 AAATACAAAA ATAGAAATGCGAATTCTGTGGATCGAACA CAGGACCTCC chrII:347414-347934 - 41 1.35e-06 TATTAAAAAA ATATTACTGAAGGATGCGAGGTTCGAACT CGCGCGGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWYGCYCMMDVBSGGRWTCGAACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:930714-931150 1.3e-13 63_[+1]_8 chrV:550918-551598 2.2e-12 69_[+1]_2 chrIX:336118-336645 6.6e-12 10_[+1]_61 chrII:405664-406394 6.6e-12 30_[-1]_41 chrXIII:463423-463860 6.6e-12 12_[-1]_59 chrVII:544254-544877 6.6e-12 54_[+1]_17 chrXV:571604-572409 6.6e-12 51_[-1]_20 chrXIV:569628-570049 8.9e-12 71_[+1] chrXII:1051906-1052211 8.9e-12 55_[+1]_16 chrV:443051-443340 1e-11 49_[+1]_22 chrXVI:581838-582444 2.1e-11 21_[-1]_50 chrXVI:209992-210460 2.8e-11 8_[+1]_63 chrII:266176-266738 2.8e-11 21_[-1]_50 chrXIII:480387-480877 3.2e-11 31_[+1]_40 chrX:115585-115685 3.6e-11 57_[+1]_14 chrIV:1016974-1017499 4.2e-11 13_[+1]_58 chrIX:299969-300509 4.2e-11 31_[+1]_40 chrVII:185480-185937 4.2e-11 48_[+1]_23 chrIX:174855-175383 5.4e-11 12_[-1]_59 chrIX:325407-326149 5.4e-11 70_[-1]_1 chrXII:426904-427548 5.4e-11 5_[-1]_66 chrXII:214667-215061 5.4e-11 61_[+1]_10 chrXIII:747652-748165 7e-11 26_[+1]_45 chrVIII:134041-134687 9.1e-11 56_[-1]_15 chrVII:736184-736661 9.1e-11 17_[-1]_54 chrXIV:632499-632825 9.1e-11 38_[-1]_33 chrIII:168077-168564 9.1e-11 23_[+1]_48 chrV:249771-250897 1.3e-10 51_[-1]_20 chrXV:594058-594628 1.5e-10 53_[+1]_18 chrV:354798-355217 2.1e-10 26_[-1]_45 chrX:374187-374287 2.1e-10 19_[+1]_52 chrX:355204-355304 2.1e-10 2_[-1]_69 chrIV:568531-569331 2.1e-10 50_[-1]_21 chrV:176880-177453 2.1e-10 32_[-1]_39 chrXIII:131482-132120 2.1e-10 66_[+1]_5 chrXIII:586368-586895 2.4e-10 47_[+1]_24 chrXIII:372188-372771 2.4e-10 8_[+1]_63 chrVIII:115878-116299 3.4e-10 61_[+1]_10 chrXIV:95998-96459 3.4e-10 55_[+1]_16 chrIV:619645-620262 3.8e-10 58_[+1]_13 chrII:226972-227341 3.8e-10 28_[-1]_43 chrV:438491-438984 4.3e-10 64_[-1]_7 chrIV:802580-802836 7.5e-10 65_[+1]_6 chrVII:541714-542172 8.4e-10 6_[-1]_65 chrVII:730959-731453 9.4e-10 32_[-1]_39 chrX:197123-197223 9.4e-10 31_[+1]_40 chrVIII:145378-147089 1e-09 51_[+1]_20 chrVII:774130-774702 1.2e-09 33_[-1]_38 chrXI:578735-579320 1.2e-09 61_[-1]_10 chrIV:884292-884645 1.8e-09 53_[-1]_18 chrXI:490755-491357 2e-09 12_[-1]_59 chrVII:823360-823721 2.2e-09 43_[-1]_28 chrXII:732014-732305 2.9e-09 59_[-1]_12 chrXIII:420331-420859 2.9e-09 35_[+1]_36 chrVII:700387-701153 2.9e-09 14_[-1]_57 chrXII:592328-592718 2.9e-09 38_[+1]_33 chrX:422705-422805 2.9e-09 39_[-1]_32 chrVI:226446-226947 4.4e-09 34_[+1]_37 chrVIII:132720-133351 5.3e-09 33_[+1]_38 chrIV:1175589-1176127 5.8e-09 71_[-1] chrIV:83356-83812 6.4e-09 62_[-1]_9 chrXV:464285-464781 7e-09 46_[-1]_25 chrXVI:689364-689864 7.7e-09 60_[-1]_11 chrIII:227771-228227 1.2e-08 71_[-1] chrX:538524-538624 1.6e-08 12_[-1]_59 chrXVI:744072-744647 1.6e-08 24_[-1]_47 chrXV:710071-710474 2.1e-08 28_[-1]_43 chrIII:90787-91096 2.3e-08 59_[-1]_12 chrII:9466-9818 7.1e-08 52_[-1]_19 chrVIII:475504-475903 7.7e-08 45_[+1]_26 chrXII:92405-92720 1.4e-07 51_[-1]_20 chrVI:101133-101731 1.4e-07 9_[-1]_62 chrVIII:388658-389219 1.4e-07 62_[+1]_9 chrXIII:195932-196297 1.4e-07 61_[+1]_10 chrIV:519660-519912 1.9e-07 68_[-1]_3 chrXVI:622275-622849 2.2e-07 20_[+1]_51 chrXIII:837743-838220 5.6e-07 63_[-1]_8 chrIII:149733-150252 1e-06 27_[-1]_44 chrXVI:559967-560462 1.3e-06 26_[+1]_45 chrII:347414-347934 1.3e-06 40_[-1]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWYGCYCMMDVBSGGRWTCGAACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAWYGCYCMMDVBSGGRWTCGAACC width=29 seqs=80 chrVII:930714-931150 ( 64) AAAAAAATGCGCAAGCCCGGAATCGAACC 1 chrV:550918-551598 ( 70) AAAAAATTGGTCTCTAGCGGGATCGAACC 1 chrIX:336118-336645 ( 11) AAAAAATCTCCGCGACGGGGAATTGAACC 1 chrII:405664-406394 ( 31) AAAAAATCTCCGCGACGGGGAATTGAACC 1 chrXIII:463423-463860 ( 13) AAAAAATCTCCGCGACGGGGAATTGAACC 1 chrVII:544254-544877 ( 55) AAAAAATCTCCGCGACGGGGAATTGAACC 1 chrXV:571604-572409 ( 52) AAAAAATCTCCGCGACGGGGAATTGAACC 1 chrXIV:569628-570049 ( 72) AAAAGAATGGTCTCTAGCGGGATCGAACC 1 chrXII:1051906-1052211 ( 56) AAAATAATGGTCTCTAGCGGGATCGAACC 1 chrV:443051-443340 ( 50) AAAAATATGGTCTCTAGCGGGATCGAACC 1 chrXVI:581838-582444 ( 22) AAAAGAAAGCCCTGTAGGGGGCTCGAACC 1 chrXVI:209992-210460 ( 9) AAGAAAACTCCGATACGGGGAGTCGAACC 1 chrII:266176-266738 ( 22) AAAAAAATGCTTCCAATCGGATTTGAACC 1 chrXIII:480387-480877 ( 32) AAAAAGAAGCCCTGTAGGGGGCTCGAACC 1 chrX:115585-115685 ( 58) AAAAATACTCCGATACGGGGAGTCGAACC 1 chrIV:1016974-1017499 ( 14) AAAGAAACTCCGAAGCGGGGAGTCGAACC 1 chrIX:299969-300509 ( 32) AAAAGATAGCCCTGTAGGGGGCTCGAACC 1 chrVII:185480-185937 ( 49) AAAAGATAGCCCTGTAGGGGGCTCGAACC 1 chrIX:174855-175383 ( 13) AAAAAATTGCTTCCAATCGGATTTGAACC 1 chrIX:325407-326149 ( 71) AAAAAATTGCTTCCAATCGGATTTGAACC 1 chrXII:426904-427548 ( 6) AAAAATTCTCCGCGACGGGGAATTGAACC 1 chrXII:214667-215061 ( 62) AAATAAATGGACGCAACCGGAATCGAACC 1 chrXIII:747652-748165 ( 27) TAAAAAACACTCACGATGGGGGTCGAACC 1 chrVIII:134041-134687 ( 57) CAAAAAAAGGTCCTACCCGGATTCGAACC 1 chrVII:736184-736661 ( 18) AAAACAACACTCACGATGGGGGTCGAACC 1 chrXIV:632499-632825 ( 39) AAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrIII:168077-168564 ( 24) CAAAAAAAGGTCCTACCCGGATTCGAACC 1 chrV:249771-250897 ( 52) ATAAAAAAGGTCCTACCCGGATTCGAACC 1 chrXV:594058-594628 ( 54) AAACAGATGCGCAAGCCGGGAATCGAACC 1 chrV:354798-355217 ( 27) AAAAGTACTCCGATACGGGGAGTCGAACC 1 chrX:374187-374287 ( 20) AACAAAGCACTCACGATGGGGGTCGAACC 1 chrX:355204-355304 ( 3) AACAAAGCACTCACGATGGGGGTCGAACC 1 chrIV:568531-569331 ( 51) AACAAAGCACTCACGATGGGGGTCGAACC 1 chrV:176880-177453 ( 33) AAAAGTACTCCGATACGGGGAGTCGAACC 1 chrXIII:131482-132120 ( 67) AACAAAGCACTCACGATGGGGGTCGAACC 1 chrXIII:586368-586895 ( 48) AAAAAAATGATTTCGCCCAGGATCGAACT 1 chrXIII:372188-372771 ( 9) AAAAAAATGATTTCGCCCAGGATCGAACT 1 chrVIII:115878-116299 ( 62) CAAAAAATGCTTCCAATCGGATTTGAACC 1 chrXIV:95998-96459 ( 56) AAAAATTTGAGCGGTACGAGAATCGAACC 1 chrIV:619645-620262 ( 59) AAAAAATCTTCCCCGCCAGGACTTGAACC 1 chrII:226972-227341 ( 29) AAAATAACGACAACTGCAGGACTCGAACC 1 chrV:438491-438984 ( 65) AAAAAATTGATTTCGCCCAGGATCGAACT 1 chrIV:802580-802836 ( 66) TAAAAAGAGGTCCTACCCGGATTCGAACC 1 chrVII:541714-542172 ( 7) AAGAACACTCCGATACGGGGAGTCGAACC 1 chrVII:730959-731453 ( 33) CAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrX:197123-197223 ( 32) AAGAAATTGGACGAGTCCGGAATCGAACC 1 chrVIII:145378-147089 ( 52) AAAAGATTGGACGAGTCCGGAATCGAACC 1 chrVII:774130-774702 ( 34) AAAAATTTGGACGAGTCCGGAATCGAACC 1 chrXI:578735-579320 ( 62) TAAAGAACTCCTCATAGGGGGCTCGAACC 1 chrIV:884292-884645 ( 54) GAGAAAGTGCTCGAGGTGGGGTTTGAACC 1 chrXI:490755-491357 ( 13) AAAAATTCTTCCCCGCCAGGACTTGAACC 1 chrVII:823360-823721 ( 44) CAAAAAATGATTTCGCCCAGGATCGAACT 1 chrXII:732014-732305 ( 60) AAAATAATGAGAGCTAAGGGATTCGAACC 1 chrXIII:420331-420859 ( 36) ATAAAAATGATTTCGCCCAGGATCGAACT 1 chrVII:700387-701153 ( 15) AAAATATTGATACCCGCGGGGTTTGAACC 1 chrXII:592328-592718 ( 39) AAAATAATGAGAGCTAAGGGATTCGAACC 1 chrX:422705-422805 ( 40) GAAAATGTGCTCCAGGGGAGGTTCGAACT 1 chrVI:226446-226947 ( 35) AGAGATAAGCCCTGTAGGGGGCTCGAACC 1 chrVIII:132720-133351 ( 34) AAATTATCGACAACTGCAGGACTCGAACC 1 chrIV:1175589-1176127 ( 72) GCAAAAATGCTCCAGGGGAGGTTCGAACT 1 chrIV:83356-83812 ( 63) TTAAACTTGCGCAAGCCCGGAATCGAACC 1 chrXV:464285-464781 ( 47) AATAAAAGGGGCGAGCTGGGAATTGAACC 1 chrXVI:689364-689864 ( 61) AATAATACGACACCAGCAGGATTTGAACC 1 chrIII:227771-228227 ( 72) AATTAAACGACACCAGCAGGATTTGAACC 1 chrX:538524-538624 ( 13) TAATCAACGTTCCGTACGGGACTCGAACC 1 chrXVI:744072-744647 ( 25) AAAATTTTGCCACCTGTCAGAATTGAACT 1 chrXV:710071-710474 ( 29) AAAAAATTAGCGCCGCTCGGTTTCGATCC 1 chrIII:90787-91096 ( 60) AAAATAATGGTTGCTAAGAGATTCGAACT 1 chrII:9466-9818 ( 53) AAAATACTGAAGGATGCGAGGTTCGAACT 1 chrVIII:475504-475903 ( 46) GTTAAAATGTTCCAACCGAGGATCGAACT 1 chrXII:92405-92720 ( 52) AGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrVI:101133-101731 ( 10) AGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrVIII:388658-389219 ( 63) AGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrXIII:195932-196297 ( 62) AGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrIV:519660-519912 ( 69) AAGTTATTGAAGGATGCGAGGTTCGAACT 1 chrXVI:622275-622849 ( 21) AAATAAATGCGAATTCTGTGGATCGAACA 1 chrXIII:837743-838220 ( 64) AAAAATATCTCCCGGGGGCGAGTCGAACG 1 chrIII:149733-150252 ( 28) AATTTAATAGCGCCGCTCGGTTTCGATCC 1 chrXVI:559967-560462 ( 27) ATAGAAATGCGAATTCTGTGGATCGAACA 1 chrII:347414-347934 ( 41) ATATTACTGAAGGATGCGAGGTTCGAACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWYGCYCMMDVBSGGRWTCGAACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 9.32611 E= 2.8e-285 141 -160 -192 -231 145 -392 -160 -205 132 -192 -75 -231 145 -392 -233 -164 122 -292 -92 -105 125 -292 -134 -93 79 -292 -111 17 -147 108 -392 61 -164 -392 189 -73 -47 144 8 -231 -183 117 -75 27 -131 147 17 -118 -11 99 -22 -83 -31 121 -11 -118 22 -392 83 -11 6 108 33 -305 -305 112 72 -39 -205 78 166 -1297 -31 -392 191 -363 -1297 -1297 240 -1297 86 -1297 112 -363 36 -46 -1 -18 -1297 -1297 -1297 169 -1297 199 -1297 -31 -263 -1297 233 -1297 161 -1297 -1297 -263 165 -1297 -1297 -363 -1297 240 -1297 -1297 -363 203 -392 -73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWYGCYCMMDVBSGGRWTCGAACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 80 E= 2.8e-285 0.825000 0.062500 0.050000 0.062500 0.850000 0.012500 0.062500 0.075000 0.775000 0.050000 0.112500 0.062500 0.850000 0.012500 0.037500 0.100000 0.725000 0.025000 0.100000 0.150000 0.737500 0.025000 0.075000 0.162500 0.537500 0.025000 0.087500 0.350000 0.112500 0.400000 0.012500 0.475000 0.100000 0.012500 0.700000 0.187500 0.225000 0.512500 0.200000 0.062500 0.087500 0.425000 0.112500 0.375000 0.125000 0.525000 0.212500 0.137500 0.287500 0.375000 0.162500 0.175000 0.250000 0.437500 0.175000 0.137500 0.362500 0.012500 0.337500 0.287500 0.325000 0.400000 0.237500 0.037500 0.037500 0.412500 0.312500 0.237500 0.075000 0.325000 0.600000 0.000000 0.250000 0.012500 0.712500 0.025000 0.000000 0.000000 1.000000 0.000000 0.562500 0.000000 0.412500 0.025000 0.400000 0.137500 0.187500 0.275000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.250000 0.050000 0.000000 0.950000 0.000000 0.950000 0.000000 0.000000 0.050000 0.975000 0.000000 0.000000 0.025000 0.000000 1.000000 0.000000 0.000000 0.025000 0.775000 0.012500 0.187500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWYGCYCMMDVBSGGRWTCGAACC MEME-1 regular expression -------------------------------------------------------------------------------- AAAAAA[AT][TC]G[CAG][CT][CG][CA][CA][AGT][CAG][CGT][GC][GA]G[AG][AT]T[CT]GAACC -------------------------------------------------------------------------------- Time 355.72 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBBNBDTRGYYYAGTKGKTWRAGSSNNC MEME-2 width = 29 sites = 55 llr = 930 E-value = 1.3e-132 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBBNBDTRGYYYAGTKGKTWRAGSSNNC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::11213:5:::1a1::::26573::322 pos.-specific C 154333::::653:::1::2::2:54236 probability G 8522233:5a:22:9:5a51:41635321 matrix T 1134434a::444::93:56421111331 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * * ** * Relative 1.4 * * * *** * Entropy 1.2 * * ** *** * (24.4 bits) 1.0 ** **** *** ** * 0.7 ** ***** *** ** *** * 0.5 ** ***** ****** ****** * 0.2 **** ********************* ** 0.0 ----------------------------- Multilevel GCCTTGTTGGCCTAGTGGTTAAAGCGTCC consensus GTCCTG A TTC T G TG AGCATA sequence GGACA GG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYYYAGTKGKTWRAGSSNNC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:602057-602563 + 52 1.76e-12 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrII:197130-197863 + 48 1.76e-12 CAGTAATCAA GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXII:734585-734990 + 65 1.76e-12 AACAAAGTTT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAA chrXII:874879-875913 + 30 7.34e-11 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrIV:359268-359847 + 70 7.34e-11 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GG chrVII:115277-115727 + 36 7.34e-11 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrX:617696-617796 + 54 1.36e-10 AACAAACAAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTC AGATTTAGGT chrX:424298-424398 - 23 1.83e-10 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrXI:84022-84444 + 25 1.83e-10 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrIV:519660-519912 + 7 1.83e-10 TTTTAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrXII:605145-605644 - 60 5.57e-10 TTTCGAAAAT GCTCGTGTAGCTCAGTGGTTAGAGCTTCG TGCTTATAGC chrXIV:374622-375096 + 60 5.57e-10 AGAAAAATAA GCGGACTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrIV:1095137-1095709 - 60 5.57e-10 TCTTATGTTA GCGGACTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXIII:504640-505194 + 28 7.23e-10 ACAGATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrVII:422798-423401 + 43 7.23e-10 ACAGATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrVIII:237748-238086 - 44 9.34e-10 CAAATAGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXIII:352082-352543 + 18 9.34e-10 ATGAATATAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrVIII:358271-358794 - 59 9.34e-10 CAAATAGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXVI:689364-689864 + 1 1.36e-09 . GGCACTATGGCCGAGTGGTTAAGGCGACA GACTTGAAAT chrV:438491-438984 + 13 1.53e-09 CAACAAATTA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrIX:325407-326149 + 20 1.53e-09 TAAAATACGA GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrX:378156-378256 + 41 1.53e-09 TAAATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXIII:372188-372771 - 61 1.53e-09 AATAAAACCT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXI:307941-308504 - 17 1.53e-09 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXII:167736-168298 - 30 4.30e-09 ATAGTCATAT GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrIV:1305372-1305851 + 69 4.30e-09 TACAAATTAA GGCAACTTGGCCGAGTGGTTAAGGCGAAA GAT chrIV:1175589-1176127 + 21 8.12e-09 ACAAAACAAA GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrX:390909-391009 - 1 8.12e-09 AAGAAATAGT GCTTCAGTAGCTCAGTAGGAAGAGCGTCA chrXI:74434-74847 + 34 1.21e-08 ATAGCAATTA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrIII:127519-127901 + 56 1.21e-08 AAGATAAAAT GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXVI:860112-860674 + 36 1.48e-08 TAAATAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrIV:83356-83812 + 14 1.48e-08 AGTTCACTTA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrX:396427-396527 - 8 1.48e-08 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCA chrXV:226534-226856 - 8 1.48e-08 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCA chrVII:122026-122525 + 44 1.79e-08 CAACGAATTA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrIV:1351959-1353122 - 20 1.79e-08 CAACGAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrIV:1201523-1201958 + 60 1.79e-08 CAAATAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrI:138925-139356 + 62 3.10e-08 CAATTAGTAC GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrV:249771-250897 + 2 3.70e-08 T GGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrXIII:808086-808518 - 37 3.70e-08 AGAAGAAAAA GGTCCTATAGTGTAGTGGTTATCACTTTC GGTTCTGATC chrVIII:134041-134687 + 7 3.70e-08 AGTTCC GGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrII:350602-351026 + 63 4.39e-08 TCAATAAAAG GGTTTTATAGTGTAGTGGTTATCACTTTC GGTTTTGAT chrV:130863-131404 - 42 4.39e-08 ATAATTAAGA GGTTTTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrII:326517-327194 - 32 4.79e-08 TCGAGTTCCG GGTCCAATGGTCCAGTGGTTCAAGACGTC GCCTTTACAC chrXV:110847-111194 - 35 5.21e-08 CAATTAACCC GGGCGGTTAGTGTAGTGGTTATCATCCCA CCCTTCCAAG chrIX:336118-336645 - 61 9.93e-08 TAGAAACAAA TCCGTGATAGTTTAATGGTCAGAATGGGC GCTTGTCGCG chrX:204471-204571 + 31 9.93e-08 AACATAAAAA TCCGTGATAGTTTAATGGTCAGAATGGGC GCTTGTCGCG chrX:355204-355304 + 35 9.93e-08 CTTTGTTTCT TCCGTGATAGTTTAATGGTCAGAATGGGC GCTTGTCGCG chrXV:571604-572409 + 2 9.93e-08 A TCCGTGATAGTTTAATGGTCAGAATGGGC GCTTGTCGCG chrVII:531401-531801 + 59 9.93e-08 TCGAGTTACT TCCGTGATAGTTTAATGGTCAGAATGGGC GCTTGTCGCG chrVI:167235-167700 + 20 1.25e-07 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTTTAAGGCGC AAGACTGTAA chrX:542771-542871 - 52 1.25e-07 CAATTAAATA CTCTCGGTAGCCAAGTTGGTTTAAGGCGC AAGACTGTAA chrVI:210423-210924 - 56 1.25e-07 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTTTAAGGCGC AAGACTGTAA chrVII:1004002-1004404 + 63 4.06e-07 TCAAGGGTTT GCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACTTGTAAT chrIII:123439-123814 - 44 5.54e-07 TTTCAAAGGA GGGCGTGTGGTCTAGAGGTATGATTCTCG CTTAGGGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYYYAGTKGKTWRAGSSNNC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602057-602563 1.8e-12 51_[+2]_20 chrII:197130-197863 1.8e-12 47_[+2]_24 chrXII:734585-734990 1.8e-12 64_[+2]_7 chrXII:874879-875913 7.3e-11 29_[+2]_42 chrIV:359268-359847 7.3e-11 69_[+2]_2 chrVII:115277-115727 7.3e-11 35_[+2]_36 chrX:617696-617796 1.4e-10 53_[+2]_18 chrX:424298-424398 1.8e-10 22_[-2]_49 chrXI:84022-84444 1.8e-10 24_[+2]_47 chrIV:519660-519912 1.8e-10 6_[+2]_65 chrXII:605145-605644 5.6e-10 59_[-2]_12 chrXIV:374622-375096 5.6e-10 59_[+2]_12 chrIV:1095137-1095709 5.6e-10 59_[-2]_12 chrXIII:504640-505194 7.2e-10 27_[+2]_44 chrVII:422798-423401 7.2e-10 42_[+2]_29 chrVIII:237748-238086 9.3e-10 43_[-2]_28 chrXIII:352082-352543 9.3e-10 17_[+2]_54 chrVIII:358271-358794 9.3e-10 58_[-2]_13 chrXVI:689364-689864 1.4e-09 [+2]_71 chrV:438491-438984 1.5e-09 12_[+2]_59 chrIX:325407-326149 1.5e-09 19_[+2]_52 chrX:378156-378256 1.5e-09 40_[+2]_31 chrXIII:372188-372771 1.5e-09 60_[-2]_11 chrXI:307941-308504 1.5e-09 16_[-2]_55 chrXII:167736-168298 4.3e-09 29_[-2]_42 chrIV:1305372-1305851 4.3e-09 68_[+2]_3 chrIV:1175589-1176127 8.1e-09 20_[+2]_51 chrX:390909-391009 8.1e-09 [-2]_71 chrXI:74434-74847 1.2e-08 33_[+2]_38 chrIII:127519-127901 1.2e-08 55_[+2]_16 chrXVI:860112-860674 1.5e-08 35_[+2]_36 chrIV:83356-83812 1.5e-08 13_[+2]_58 chrX:396427-396527 1.5e-08 7_[-2]_64 chrXV:226534-226856 1.5e-08 7_[-2]_64 chrVII:122026-122525 1.8e-08 43_[+2]_28 chrIV:1351959-1353122 1.8e-08 19_[-2]_52 chrIV:1201523-1201958 1.8e-08 59_[+2]_12 chrI:138925-139356 3.1e-08 61_[+2]_10 chrV:249771-250897 3.7e-08 1_[+2]_70 chrXIII:808086-808518 3.7e-08 36_[-2]_35 chrVIII:134041-134687 3.7e-08 6_[+2]_65 chrII:350602-351026 4.4e-08 62_[+2]_9 chrV:130863-131404 4.4e-08 41_[-2]_30 chrII:326517-327194 4.8e-08 31_[-2]_40 chrXV:110847-111194 5.2e-08 34_[-2]_37 chrIX:336118-336645 9.9e-08 60_[-2]_11 chrX:204471-204571 9.9e-08 30_[+2]_41 chrX:355204-355304 9.9e-08 34_[+2]_37 chrXV:571604-572409 9.9e-08 1_[+2]_70 chrVII:531401-531801 9.9e-08 58_[+2]_13 chrVI:167235-167700 1.2e-07 19_[+2]_52 chrX:542771-542871 1.2e-07 51_[-2]_20 chrVI:210423-210924 1.2e-07 55_[-2]_16 chrVII:1004002-1004404 4.1e-07 62_[+2]_9 chrIII:123439-123814 5.5e-07 43_[-2]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYYYAGTKGKTWRAGSSNNC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBBNBDTRGYYYAGTKGKTWRAGSSNNC width=29 seqs=55 chrXIV:602057-602563 ( 52) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrII:197130-197863 ( 48) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:734585-734990 ( 65) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:874879-875913 ( 30) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrIV:359268-359847 ( 70) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrVII:115277-115727 ( 36) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrX:617696-617796 ( 54) GGGAGTTTGGCCGAGTGGTTTAAGGCGTC 1 chrX:424298-424398 ( 23) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXI:84022-84444 ( 25) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrIV:519660-519912 ( 7) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXII:605145-605644 ( 60) GCTCGTGTAGCTCAGTGGTTAGAGCTTCG 1 chrXIV:374622-375096 ( 60) GCGGACTTAGCTCAGTTGGGAGAGCGCCA 1 chrIV:1095137-1095709 ( 60) GCGGACTTAGCTCAGTTGGGAGAGCGCCA 1 chrXIII:504640-505194 ( 28) GGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrVII:422798-423401 ( 43) GGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrVIII:237748-238086 ( 44) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrXIII:352082-352543 ( 18) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrVIII:358271-358794 ( 59) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrXVI:689364-689864 ( 1) GGCACTATGGCCGAGTGGTTAAGGCGACA 1 chrV:438491-438984 ( 13) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrIX:325407-326149 ( 20) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrX:378156-378256 ( 41) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXIII:372188-372771 ( 61) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXI:307941-308504 ( 17) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXII:167736-168298 ( 30) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrIV:1305372-1305851 ( 69) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrIV:1175589-1176127 ( 21) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrX:390909-391009 ( 1) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrXI:74434-74847 ( 34) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrIII:127519-127901 ( 56) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXVI:860112-860674 ( 36) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrIV:83356-83812 ( 14) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrX:396427-396527 ( 8) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXV:226534-226856 ( 8) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVII:122026-122525 ( 44) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrIV:1351959-1353122 ( 20) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrIV:1201523-1201958 ( 60) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrI:138925-139356 ( 62) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrV:249771-250897 ( 2) GGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrXIII:808086-808518 ( 37) GGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrVIII:134041-134687 ( 7) GGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrII:350602-351026 ( 63) GGTTTTATAGTGTAGTGGTTATCACTTTC 1 chrV:130863-131404 ( 42) GGTTTTATAGTGTAGTGGTTATCACTTTC 1 chrII:326517-327194 ( 32) GGTCCAATGGTCCAGTGGTTCAAGACGTC 1 chrXV:110847-111194 ( 35) GGGCGGTTAGTGTAGTGGTTATCATCCCA 1 chrIX:336118-336645 ( 61) TCCGTGATAGTTTAATGGTCAGAATGGGC 1 chrX:204471-204571 ( 31) TCCGTGATAGTTTAATGGTCAGAATGGGC 1 chrX:355204-355304 ( 35) TCCGTGATAGTTTAATGGTCAGAATGGGC 1 chrXV:571604-572409 ( 2) TCCGTGATAGTTTAATGGTCAGAATGGGC 1 chrVII:531401-531801 ( 59) TCCGTGATAGTTTAATGGTCAGAATGGGC 1 chrVI:167235-167700 ( 20) CTCTCGGTAGCCAAGTTGGTTTAAGGCGC 1 chrX:542771-542871 ( 52) CTCTCGGTAGCCAAGTTGGTTTAAGGCGC 1 chrVI:210423-210924 ( 56) CTCTCGGTAGCCAAGTTGGTTTAAGGCGC 1 chrVII:1004002-1004404 ( 63) GCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 chrIII:123439-123814 ( 44) GGGCGTGTGGTCTAGAGGTATGATTCTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYYYAGTKGKTWRAGSSNNC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.8251 E= 1.3e-132 -1243 -179 208 -109 -309 126 126 -251 -251 94 32 15 -209 53 32 43 -64 43 -6 23 -129 43 79 -9 -19 -1243 62 49 -1243 -1243 -1243 169 61 -1243 148 -1243 -1243 -1243 240 -1243 -1243 166 -1243 36 -1243 126 -21 30 -151 79 -21 36 169 -1243 -1243 -1243 -109 -1243 217 -1243 -409 -238 -1243 161 -309 -57 148 -1 -1243 -1243 240 -1243 -1243 -1243 132 76 -92 -6 -106 86 95 -338 -338 23 55 -1243 101 -92 111 -21 -106 -209 -29 -338 171 -151 -409 137 87 -109 -1243 114 126 -129 -29 -6 43 -1 -92 79 20 -9 -51 175 -106 -251 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYYYAGTKGKTWRAGSSNNC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 55 E= 1.3e-132 0.000000 0.054545 0.800000 0.145455 0.036364 0.454545 0.454545 0.054545 0.054545 0.363636 0.236364 0.345455 0.072727 0.272727 0.236364 0.418182 0.200000 0.254545 0.181818 0.363636 0.127273 0.254545 0.327273 0.290909 0.272727 0.000000 0.290909 0.436364 0.000000 0.000000 0.000000 1.000000 0.472727 0.000000 0.527273 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.454545 0.163636 0.381818 0.109091 0.327273 0.163636 0.400000 1.000000 0.000000 0.000000 0.000000 0.145455 0.000000 0.854545 0.000000 0.018182 0.036364 0.000000 0.945455 0.036364 0.127273 0.527273 0.309091 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.472727 0.527273 0.163636 0.181818 0.090909 0.563636 0.600000 0.018182 0.018182 0.363636 0.454545 0.000000 0.381818 0.163636 0.672727 0.163636 0.090909 0.072727 0.254545 0.018182 0.618182 0.109091 0.018182 0.490909 0.345455 0.145455 0.000000 0.418182 0.454545 0.127273 0.254545 0.181818 0.254545 0.309091 0.163636 0.327273 0.218182 0.290909 0.218182 0.636364 0.090909 0.054545 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYYYAGTKGKTWRAGSSNNC MEME-2 regular expression -------------------------------------------------------------------------------- G[CG][CTG][TCG][TCA][GTC][TGA]T[GA]G[CT][CT][TC]AGT[GT]G[TG]T[AT][AG]A[GA][CG][GC][TAG][CTG][CA] -------------------------------------------------------------------------------- Time 678.56 secs. ******************************************************************************** ******************************************************************************** MOTIF MRCKTCKGWCWMBTWATCWGRAGRTYMTG MEME-3 width = 29 sites = 19 llr = 443 E-value = 2.1e-057 ******************************************************************************** -------------------------------------------------------------------------------- Motif MRCKTCKGWCWMBTWATCWGRAGRTYMTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 442::2126:44115a::3:6a:4::31: pos.-specific C 5:8::71::a:432:::a:3:::::542: probability G 16:6:158::214:2:::164:a6::22a matrix T 1::4a13:4:52384:a:62::::a526: bits 2.4 * * * * 2.2 * * * * 1.9 * * * * 1.7 * * * * *** ** * * Relative 1.4 * * * * *** ** * * Entropy 1.2 **** * * *** **** * (33.7 bits) 1.0 ***** * * * *** ******* * 0.7 ***** *** * *** ******* * 0.5 ********** ** *********** ** 0.2 ***************************** 0.0 ----------------------------- Multilevel CGCGTCGGACTAGTAATCTGAAGGTCCTG consensus AA T T T ACC T ACG A TA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRCKTCKGWCWMBTWATCWGRAGRTYMTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrVIII:237748-238086 - 3 1.51e-13 CTGAAGAAAA AACTTCGGTCAAGTTATCTGGAGGTCCTG TG chrXVI:622275-622849 - 50 1.51e-13 CTGAAGAAAA AACTTCGGTCAAGTTATCTGGAGGTCCTG TGTTCGATCC chrVII:440343-441152 - 41 1.51e-13 CTGAAGAAAA AACTTCGGTCAAGTTATCTGGAGGTCCTG TGTTCGATCC chrXVI:559967-560462 - 56 1.51e-13 CTGAAGAAAA AACTTCGGTCAAGTTATCTGGAGGTCCTG TGTTCGATCC chrVIII:358271-358794 - 18 1.51e-13 CTGAAGAAAA AACTTCGGTCAAGTTATCTGGAGGTCCTG TGTTCGATCC chrX:374187-374287 - 49 5.65e-13 GTAATGGCAA CGCGTCTGACTTCTAATCAGAAGATTATG GGTTCGACCC chrIV:568531-569331 + 22 5.65e-13 GTAATGGCAA CGCGTCTGACTTCTAATCAGAAGATTATG GGTTCGACCC chrXIII:747652-748165 - 56 5.65e-13 GTAATGGCAA CGCGTCTGACTTCTAATCAGAAGATTATG GGTTCGACCC chrXIII:352082-352543 + 58 2.58e-12 ACTGAAGAAA TACTTCGGTCAAGTTATCTGGAGGTCCTG TGTTCGATCC chrIX:299969-300509 - 61 2.66e-11 CAATCGGTAG CGCGTATGACTCTTAATCATAAGGTTAGG GGTTCGAGCC chrXIII:480387-480877 - 61 2.66e-11 CAATCGGTAG CGCGTATGACTCTTAATCATAAGGTTAGG GGTTCGAGCC chrVI:226446-226947 - 64 2.66e-11 ATCGGTAG CGCGTATGACTCTTAATCATAAGGTTAGG GGTTCGAGCC chrX:422705-422805 + 11 8.24e-11 CAGTAGGAAG AGCGTCAGTCTCATAATCTGAAGGTCGAG AGTTCGAACC chrIV:1095137-1095709 - 19 1.10e-10 CTGAAGAAAA AACTTTGGTCAAGATATCTGGAGGTCCTG TGTTCGATCC chrVII:730959-731453 + 4 1.65e-10 TAA GGCGTGCGACTGTTAATCGCAAGATCGTG AGTTCAACCC chrXIV:632499-632825 + 10 1.65e-10 GTTGGTTAA GGCGTGCGACTGTTAATCGCAAGATCGTG AGTTCAACCC chrVI:167235-167700 - 69 2.41e-10 GGG CGAGTCGAACGCCCGATCTCAAGATTTCG TAGTGATAAA chrX:542771-542871 + 3 2.41e-10 GG CGAGTCGAACGCCCGATCTCAAGATTTCG TAGTGATAAA chrVI:210423-210924 + 7 2.41e-10 CGGGGG CGAGTCGAACGCCCGATCTCAAGATTTCG TAGTGGTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRCKTCKGWCWMBTWATCWGRAGRTYMTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVIII:237748-238086 1.5e-13 2_[-3]_69 chrXVI:622275-622849 1.5e-13 49_[-3]_22 chrVII:440343-441152 1.5e-13 40_[-3]_31 chrXVI:559967-560462 1.5e-13 55_[-3]_16 chrVIII:358271-358794 1.5e-13 17_[-3]_54 chrX:374187-374287 5.6e-13 48_[-3]_23 chrIV:568531-569331 5.6e-13 21_[+3]_50 chrXIII:747652-748165 5.6e-13 55_[-3]_16 chrXIII:352082-352543 2.6e-12 57_[+3]_14 chrIX:299969-300509 2.7e-11 60_[-3]_11 chrXIII:480387-480877 2.7e-11 60_[-3]_11 chrVI:226446-226947 2.7e-11 63_[-3]_8 chrX:422705-422805 8.2e-11 10_[+3]_61 chrIV:1095137-1095709 1.1e-10 18_[-3]_53 chrVII:730959-731453 1.7e-10 3_[+3]_68 chrXIV:632499-632825 1.7e-10 9_[+3]_62 chrVI:167235-167700 2.4e-10 68_[-3]_3 chrX:542771-542871 2.4e-10 2_[+3]_69 chrVI:210423-210924 2.4e-10 6_[+3]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRCKTCKGWCWMBTWATCWGRAGRTYMTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MRCKTCKGWCWMBTWATCWGRAGRTYMTG width=29 seqs=19 chrVIII:237748-238086 ( 3) AACTTCGGTCAAGTTATCTGGAGGTCCTG 1 chrXVI:622275-622849 ( 50) AACTTCGGTCAAGTTATCTGGAGGTCCTG 1 chrVII:440343-441152 ( 41) AACTTCGGTCAAGTTATCTGGAGGTCCTG 1 chrXVI:559967-560462 ( 56) AACTTCGGTCAAGTTATCTGGAGGTCCTG 1 chrVIII:358271-358794 ( 18) AACTTCGGTCAAGTTATCTGGAGGTCCTG 1 chrX:374187-374287 ( 49) CGCGTCTGACTTCTAATCAGAAGATTATG 1 chrIV:568531-569331 ( 22) CGCGTCTGACTTCTAATCAGAAGATTATG 1 chrXIII:747652-748165 ( 56) CGCGTCTGACTTCTAATCAGAAGATTATG 1 chrXIII:352082-352543 ( 58) TACTTCGGTCAAGTTATCTGGAGGTCCTG 1 chrIX:299969-300509 ( 61) CGCGTATGACTCTTAATCATAAGGTTAGG 1 chrXIII:480387-480877 ( 61) CGCGTATGACTCTTAATCATAAGGTTAGG 1 chrVI:226446-226947 ( 64) CGCGTATGACTCTTAATCATAAGGTTAGG 1 chrX:422705-422805 ( 11) AGCGTCAGTCTCATAATCTGAAGGTCGAG 1 chrIV:1095137-1095709 ( 19) AACTTTGGTCAAGATATCTGGAGGTCCTG 1 chrVII:730959-731453 ( 4) GGCGTGCGACTGTTAATCGCAAGATCGTG 1 chrXIV:632499-632825 ( 10) GGCGTGCGACTGTTAATCGCAAGATCGTG 1 chrVI:167235-167700 ( 69) CGAGTCGAACGCCCGATCTCAAGATTTCG 1 chrX:542771-542871 ( 3) CGAGTCGAACGCCCGATCTCAAGATTTCG 1 chrVI:210423-210924 ( 7) CGAGTCGAACGCCCGATCTCAAGATTTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRCKTCKGWCWMBTWATCWGRAGRTYMTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.52 E= 2.1e-057 25 132 -85 -256 25 -1089 174 -1089 -98 215 -1089 -1089 -1089 -1089 174 25 -1089 -1089 -1089 169 -98 185 -85 -256 -256 -85 147 2 -98 -1089 215 -1089 90 -1089 -1089 44 -1089 240 -1089 -1089 25 -1089 -26 61 25 96 -85 -98 -256 74 96 -24 -256 -26 -1089 134 61 -1089 -26 25 169 -1089 -1089 -1089 -1089 -1089 -1089 169 -1089 240 -1089 -1089 2 -1089 -85 90 -1089 48 161 -98 102 -1089 96 -1089 169 -1089 -1089 -1089 -1089 -1089 240 -1089 44 -1089 161 -1089 -1089 -1089 -1089 169 -1089 147 -1089 61 2 96 -26 -98 -256 -26 -26 102 -1089 -1089 240 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRCKTCKGWCWMBTWATCWGRAGRTYMTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 19 E= 2.1e-057 0.368421 0.473684 0.105263 0.052632 0.368421 0.000000 0.631579 0.000000 0.157895 0.842105 0.000000 0.000000 0.000000 0.000000 0.631579 0.368421 0.000000 0.000000 0.000000 1.000000 0.157895 0.684211 0.105263 0.052632 0.052632 0.105263 0.526316 0.315789 0.157895 0.000000 0.842105 0.000000 0.578947 0.000000 0.000000 0.421053 0.000000 1.000000 0.000000 0.000000 0.368421 0.000000 0.157895 0.473684 0.368421 0.368421 0.105263 0.157895 0.052632 0.315789 0.368421 0.263158 0.052632 0.157895 0.000000 0.789474 0.473684 0.000000 0.157895 0.368421 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.315789 0.000000 0.105263 0.578947 0.000000 0.263158 0.578947 0.157895 0.631579 0.000000 0.368421 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.421053 0.000000 0.578947 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.526316 0.000000 0.473684 0.315789 0.368421 0.157895 0.157895 0.052632 0.157895 0.157895 0.631579 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MRCKTCKGWCWMBTWATCWGRAGRTYMTG MEME-3 regular expression -------------------------------------------------------------------------------- [CA][GA]C[GT]TC[GT]G[AT]C[TA][AC][GCT]T[AT]ATC[TA][GC][AG]AG[GA]T[CT][CA]TG -------------------------------------------------------------------------------- Time 989.80 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:300079-300253 4.49e-01 100 chrVIII:212122-212364 1.15e-01 100 chrXIV:738622-739619 4.41e-02 100 chrVII:147991-150623 9.70e-01 100 chrXI:219528-220112 8.03e-01 100 chrI:202388-203041 5.14e-01 100 chrIV:1359210-1361211 5.17e-01 100 chrXVI:810583-811311 9.51e-01 100 chrXIII:510869-512029 3.09e-01 100 chrVII:531401-531801 3.28e-05 58_[+2(9.93e-08)]_13 chrVII:371217-371464 5.31e-01 100 chrXI:307941-308504 2.18e-05 16_[-2(1.53e-09)]_55 chrIV:667762-668590 1.90e-01 100 chrIII:168077-168564 1.35e-06 23_[+1(9.05e-11)]_48 chrXVI:340305-341003 5.82e-02 100 chrIV:1201523-1201958 1.01e-04 59_[+2(1.79e-08)]_12 chrXI:430640-431650 9.73e-01 100 chrIX:370259-370596 2.80e-01 100 chrXIV:442863-444804 5.70e-01 100 chrIV:1075304-1075763 7.02e-02 32_[-2(5.61e-05)]_39 chrXII:242201-243479 4.90e-01 100 chrII:191932-193674 7.78e-02 65_[+1(9.16e-05)]_6 chrI:20775-21039 1.43e-01 100 chrXI:355995-356512 6.47e-01 100 chrXVI:188154-188946 1.09e-01 100 chrVII:438139-440076 3.45e-01 100 chrXV:662951-664889 4.52e-01 100 chrXI:578735-579320 1.14e-06 61_[-1(1.16e-09)]_10 chrVII:876156-879057 9.07e-01 100 chrXV:759099-759494 6.50e-01 100 chrXII:1028793-1030277 3.30e-01 100 chrV:152159-152763 2.62e-01 100 chrXVI:502786-503193 4.46e-01 100 chrII:644958-645405 2.80e-01 100 chrIV:992684-993357 7.40e-01 100 chrXV:587181-588500 9.50e-01 100 chrIV:1095137-1095709 7.36e-14 18_[-3(1.10e-10)]_12_[-2(5.57e-10)]_\ 12 chrXIII:731501-733470 9.56e-01 100 chrVII:185480-185937 1.67e-08 48_[+1(4.15e-11)]_23 chrXII:636698-639954 4.04e-01 100 chrVIII:381474-383503 3.87e-01 100 chrX:606057-606157 9.82e-01 100 chrVII:405470-405826 9.50e-01 100 chrVIII:556953-557151 9.85e-01 100 chrXII:809325-815745 8.39e-01 100 chrXIII:195932-196297 1.12e-03 61_[+1(1.41e-07)]_10 chrXIV:105458-107481 3.56e-01 100 chrXIV:631492-632005 9.29e-01 100 chrVII:514960-518976 7.19e-01 100 chrXVI:744072-744647 1.57e-05 24_[-1(1.60e-08)]_47 chrXII:1017565-1019373 7.03e-01 100 chrIX:210674-210957 3.98e-01 100 chrXV:504873-506753 6.58e-01 100 chrXIII:168229-169003 9.12e-01 100 chrVIII:16130-18287 9.82e-01 100 chrXI:512926-513512 6.09e-01 100 chrX:517652-517752 4.98e-01 100 chrII:604093-607155 7.75e-01 100 chrXVI:214777-215209 4.51e-01 100 chrVI:221729-222098 7.45e-01 100 chrXI:334059-334966 7.86e-01 100 chrXII:793736-797385 9.10e-01 100 chrXI:610263-612360 7.85e-01 100 chrXI:141697-143580 2.72e-01 100 chrV:377872-379089 3.24e-01 100 chrIV:1306029-1306713 9.74e-01 100 chrVII:364877-366708 9.38e-01 100 chrXIII:320950-321674 8.67e-01 100 chrXIV:95998-96459 1.28e-06 55_[+1(3.43e-10)]_16 chrXII:1028169-1028582 1.87e-01 100 chrXII:424152-424527 9.62e-01 100 chrVIII:145378-147089 8.98e-06 51_[+1(1.05e-09)]_20 chrXI:230922-231563 2.49e-01 100 chrXI:518803-521014 5.16e-01 100 chrXII:949704-951727 8.83e-01 100 chrXVI:241306-243745 7.58e-01 100 chrV:434408-435939 6.98e-01 100 chrXII:366029-366486 7.32e-01 100 chrIV:1402187-1403338 8.08e-01 100 chrXII:198330-199719 2.53e-01 100 chrVII:411651-412581 6.31e-01 100 chrXVI:432042-434411 2.06e-01 100 chrVII:110364-110784 8.05e-01 100 chrXIV:632499-632825 1.13e-13 9_[+3(1.65e-10)]_[-1(9.05e-11)]_33 chrVII:1048829-1050567 4.57e-02 27_[-3(2.29e-05)]_44 chrXII:348156-348714 8.37e-01 100 chrII:164611-165565 5.80e-02 66_[-2(7.78e-05)]_5 chrXII:922092-922613 1.31e-01 100 chrXV:925175-925441 4.95e-01 100 chrVIII:358271-358794 3.81e-16 17_[-3(1.51e-13)]_12_[-2(9.34e-10)]_\ 13 chrVII:328385-329239 8.72e-01 100 chrXI:202287-203258 3.47e-02 14_[-1(6.40e-05)]_57 chrXV:1025725-1026024 8.31e-01 100 chrIII:295360-295965 8.72e-01 100 chrXV:167818-168518 7.06e-01 100 chrII:347414-347934 8.74e-04 40_[-1(1.35e-06)]_31 chrIV:118440-118855 5.57e-01 100 chrXII:460435-460733 5.71e-02 100 chrXVI:794420-796102 7.16e-01 100 chrX:122162-122262 8.32e-01 100 chrVI:210423-210924 2.60e-11 6_[+3(2.41e-10)]_20_[-2(1.25e-07)]_\ 16 chrXII:47763-49169 6.47e-01 100 chrXVI:559967-560462 1.52e-12 26_[+1(1.35e-06)]_[-3(1.51e-13)]_16 chrII:392588-395602 3.66e-01 100 chrXII:300366-301249 5.15e-01 100 chrIII:162504-163905 9.83e-01 100 chrVIII:388658-389219 1.12e-03 62_[+1(1.41e-07)]_9 chrXVI:921069-921521 8.72e-01 100 chrXII:1051906-1052211 3.80e-08 55_[+1(8.91e-12)]_16 chrXV:113478-113882 3.21e-01 100 chrXIII:159318-159724 8.94e-01 100 chrV:51796-53279 9.69e-01 100 chrVI:226446-226947 4.05e-13 34_[+1(4.37e-09)]_[-3(2.66e-11)]_8 chrVII:363912-364449 9.16e-01 100 chrV:311003-312303 2.64e-02 57_[-2(7.29e-05)]_14 chrIV:1239360-1240299 7.71e-01 100 chrIII:227771-228227 1.93e-05 71_[-1(1.22e-08)] chrXII:953900-954731 2.27e-02 100 chrIV:1305372-1305851 4.50e-05 68_[+2(4.30e-09)]_3 chrXV:424194-424701 9.98e-01 100 chrIV:555400-556472 5.21e-01 100 chrXIII:667170-668098 7.39e-01 100 chrX:73199-73299 7.73e-01 100 chrIV:1351959-1353122 1.01e-04 19_[-2(1.79e-08)]_52 chrVI:101133-101731 1.12e-03 9_[-1(1.41e-07)]_62 chrVII:779278-779701 5.50e-01 100 chrXV:1003917-1004962 9.29e-01 100 chrXIII:861168-861584 9.61e-01 100 chrXV:842381-842968 4.13e-02 100 chrXI:67747-69108 7.12e-01 100 chrVII:882442-883983 5.83e-01 100 chrX:651873-651973 3.07e-01 100 chrII:415507-415895 3.14e-01 100 chrXII:282722-283903 8.27e-02 100 chrII:167876-169681 6.35e-01 100 chrXIII:747652-748165 7.24e-16 26_[+1(7.01e-11)]_[-3(5.65e-13)]_16 chrXIV:529405-530372 9.25e-01 100 chrIX:316111-318397 3.50e-01 100 chrVII:823360-823721 1.06e-05 43_[-1(2.18e-09)]_28 chrII:332284-333087 9.38e-01 100 chrXI:463019-464319 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chrXII:628189-628990 9.92e-01 100 chrII:9466-9818 7.11e-05 52_[-1(7.13e-08)]_19 chrIX:98243-100047 9.72e-01 100 chrV:354798-355217 4.45e-06 26_[-1(2.14e-10)]_45 chrXVI:820455-821016 6.56e-01 100 chrXV:594058-594628 3.08e-06 53_[+1(1.49e-10)]_18 chrXIV:173962-174669 2.93e-01 100 chrVII:648757-649346 7.45e-01 100 chrXI:260245-260818 4.22e-01 100 chrVII:479142-482860 7.32e-02 36_[-2(7.53e-05)]_35 chrXIV:415128-416167 3.31e-01 100 chrXIII:586368-586895 2.47e-06 47_[+1(2.41e-10)]_24 chrXVI:689364-689864 5.12e-12 [+2(1.36e-09)]_31_[-1(7.73e-09)]_11 chrV:269200-270771 9.90e-01 100 chrXV:1027533-1029633 8.04e-01 100 chrX:745083-745183 3.89e-01 100 chrX:663660-663760 9.39e-02 26_[+3(9.36e-05)]_45 chrXVI:585564-586168 2.78e-01 100 chrXIV:61556-64541 5.99e-01 100 chrXII:368734-370299 1.09e-01 56_[+1(5.31e-05)]_15 chrV:99910-100278 1.31e-01 100 chrXV:438437-439434 9.22e-01 100 chrII:285850-288240 4.02e-01 100 chrVII:1004002-1004404 8.84e-05 62_[+2(4.06e-07)]_9 chrXI:84022-84444 4.26e-08 24_[+2(1.83e-10)]_47 chrXV:110847-111194 9.28e-05 34_[-2(5.21e-08)]_37 chrVIII:132720-133351 1.07e-05 33_[+1(5.30e-09)]_38 chrXVI:519974-520658 8.55e-01 100 chrV:61088-62127 8.56e-01 100 chrV:550918-551598 2.15e-08 69_[+1(2.23e-12)]_2 chrVII:533169-535184 6.68e-01 100 chrX:90058-90158 8.28e-01 100 chrIV:83356-83812 4.15e-10 13_[+2(1.48e-08)]_20_[-1(6.41e-09)]_\ 9 chrVIII:115878-116299 2.82e-06 61_[+1(3.43e-10)]_10 chrV:469237-470225 5.09e-01 100 chrVII:706931-707187 9.99e-01 100 chrXI:379358-379919 8.60e-02 100 chrXIV:585449-586602 1.43e-01 100 chrVIII:147618-148756 8.76e-01 100 chrXI:108712-110669 2.17e-01 100 chrV:443051-443340 3.92e-08 49_[+1(1.03e-11)]_22 chrIX:386335-386986 1.92e-02 37_[+2(8.31e-06)]_34 chrVII:856528-857653 3.24e-01 100 chrXIII:837743-838220 8.92e-11 45_[-3(2.41e-10)]_26 chrVII:310377-312660 7.92e-01 100 chrXIV:602057-602563 4.14e-09 51_[+2(1.76e-12)]_20 chrXIV:330410-332398 9.48e-01 100 chrVI:157906-158654 1.05e-01 100 chrXI:74434-74847 2.99e-12 56_[+3(1.65e-10)]_15 chrXIV:771790-772304 9.20e-01 100 chrXI:162442-162927 4.43e-01 100 chrXV:520677-521047 6.62e-01 100 chrXI:261059-262446 4.67e-01 100 chrXV:903921-905702 2.23e-01 100 chrX:607156-607256 2.87e-01 100 chrXV:383005-383486 8.79e-01 100 chrX:197123-197223 1.92e-06 31_[+1(9.39e-10)]_40 chrXII:92405-92720 1.31e-08 35_[+2(3.10e-08)]_36 chrXV:832307-832810 9.86e-01 100 chrXVI:571654-572507 5.23e-01 100 chrI:71694-73647 7.76e-01 100 chrXII:975805-976102 9.45e-01 100 chrXIV:560103-560785 9.98e-01 100 chrIX:174855-175383 4.63e-07 12_[-1(5.41e-11)]_59 chrIV:340493-341689 2.71e-01 100 chrVIII:149000-149224 1.78e-01 100 chrX:617696-617796 1.42e-06 53_[+2(1.36e-10)]_18 chrXVI:378678-378981 1.88e-01 100 chrXVI:718411-719822 8.54e-01 100 chrIV:357216-357693 8.79e-01 100 chrVII:730959-731453 1.57e-12 3_[+3(1.65e-10)]_[-1(9.39e-10)]_39 chrVII:554912-557561 9.54e-01 100 chrV:441776-442639 9.20e-01 100 chrXV:160349-160742 7.27e-01 100 chrII:196787-196954 6.52e-01 100 chrXII:370500-370970 4.29e-01 100 chrX:125445-125545 1.04e-01 100 chrXVI:860112-860674 2.23e-05 35_[+2(1.48e-08)]_36 chrIV:220579-222374 9.45e-01 100 chrIV:1487614-1490449 1.79e-01 100 chrIV:365967-366391 2.67e-01 100 chrII:234967-235986 8.18e-01 100 chrVIII:237748-238086 2.27e-15 2_[-3(1.51e-13)]_12_[-2(9.34e-10)]_\ 28 chrXVI:731603-732333 3.36e-01 100 chrXVI:193060-193914 2.20e-01 100 chrXI:158189-159636 9.74e-01 100 chrXIII:753007-755322 6.78e-01 100 chrII:36238-37618 5.18e-01 100 chrIV:520193-521168 3.33e-01 100 chrVII:122026-122525 2.50e-12 65_[+3(2.66e-11)]_6 chrXII:448468-449059 3.99e-01 100 chrIX:254216-254555 8.73e-01 100 chrX:424298-424398 2.78e-06 22_[-2(1.83e-10)]_49 chrVI:167235-167700 2.60e-11 19_[+2(1.25e-07)]_20_[-3(2.41e-10)]_\ 3 chrIV:359268-359847 6.75e-08 69_[+2(7.34e-11)]_2 chrIV:600672-602410 1.78e-01 100 chrXIII:887018-889395 1.75e-01 100 chrII:405664-406394 2.70e-08 30_[-1(6.62e-12)]_41 chrIV:538907-539350 1.89e-01 100 chrXV:978711-981320 8.85e-01 100 chrII:254819-255759 9.52e-01 100 chrIV:491453-492651 1.38e-01 100 chrXII:874879-875913 1.31e-06 29_[+2(7.34e-11)]_42 chrIX:336118-336645 2.04e-12 10_[+1(6.62e-12)]_21_[-2(9.93e-08)]_\ 11 chrXIII:378833-379635 9.24e-01 100 chrVIII:272696-275741 6.93e-01 100 chrIV:216625-218073 3.87e-01 100 chrXIII:549882-553147 7.14e-01 100 chrVIII:411004-411682 3.53e-01 100 chrIV:1345030-1345947 9.19e-01 100 chrIII:141793-143063 8.60e-03 16_[+1(3.48e-05)]_55 chrIV:1080147-1080854 2.48e-01 100 chrXII:837662-839420 8.19e-01 100 chrV:363636-364163 4.99e-01 100 chrIV:322170-323569 4.44e-01 100 chrXI:457890-459021 3.95e-01 100 chrXIV:783819-784311 5.26e-01 100 chrX:414696-414796 5.88e-01 100 chrIV:945757-946631 1.14e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************