# DREME 4.12.0 # command: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--TEC1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--TEC1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--TEC1/seqs-shuffled # positives: 602 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--TEC1/seqs-centered (Sun Jan 19 07:45:24 PST 2020) # negatives: 602 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--TEC1/seqs-shuffled (Sun Jan 19 07:45:25 PST 2020) # host: kali.stanford.edu # when: Sun Jan 19 08:02:00 PST 2020 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.306 C 0.197 G 0.196 T 0.301 MOTIF GRDTCGAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GRDTCGAA TTCGAHYC 76 8 3.3e-016 1.1e-011 # GGATCGAA TTCGATCC 21 2 2.9e-005 9.3e-001 # GGTTCGAA TTCGAACC 15 1 2.4e-004 7.8e+000 # GAGTCGAA TTCGACTC 14 1 4.6e-004 1.5e+001 # GATTCGAA TTCGAATC 11 1 3.1e-003 9.9e+001 # GAATCGAA TTCGATTC 15 3 3.6e-003 1.2e+002 # GGGTCGAA TTCGACCC 8 0 3.8e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 76 E= 1.1e-011 0.000000 0.000000 1.000000 0.000000 0.473684 0.000000 0.526316 0.000000 0.473684 0.000000 0.289474 0.236842 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TTTTYTW DREME-2 # Word RC Word Pos Neg P-value E-value # BEST TTTTYTW WARAAAA 210 105 3.3e-012 1.0e-007 # TTTTTTT AAAAAAA 120 59 4.8e-007 1.6e-002 # TTTTCTT AAGAAAA 73 31 1.0e-005 3.4e-001 # TTTTTTA TAAAAAA 70 38 8.3e-004 2.7e+001 # TTTTCTA TAGAAAA 26 11 9.1e-003 2.9e+002 letter-probability matrix: alength= 4 w= 7 nsites= 265 E= 1.0e-007 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.362264 0.000000 0.637736 0.000000 0.000000 0.000000 1.000000 0.298113 0.000000 0.000000 0.701887 MOTIF AGTGGTW DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AGTGGTW WACCACT 54 10 4.3e-009 1.4e-004 # AGTGGTT AACCACT 36 4 6.0e-008 1.9e-003 # AGTGGTA TACCACT 25 6 3.8e-004 1.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 62 E= 1.4e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.403226 0.000000 0.000000 0.596774 MOTIF GGGTTCRA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GGGTTCRA TYGAACCC 24 1 6.2e-007 2.0e-002 # GGGTTCAA TTGAACCC 16 1 1.3e-004 4.0e+000 # GGGTTCGA TCGAACCC 8 0 3.8e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.0e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AYGGGTG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AYGGGTG CACCCRT 23 1 1.2e-006 3.9e-002 # ATGGGTG CACCCAT 16 1 1.3e-004 4.0e+000 # ACGGGTG CACCCGT 7 0 7.7e-003 2.4e+002 letter-probability matrix: alength= 4 w= 7 nsites= 23 E= 3.9e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.304348 0.000000 0.695652 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 23.75 seconds