******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SWR1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:81903-82249 1.0000 100 chrI:138945-139337 1.0000 100 chrI:166170-166608 1.0000 100 chrII:6815-7087 1.0000 100 chrII:9464-9915 1.0000 100 chrII:36244-36543 1.0000 100 chrII:44778-45330 1.0000 100 chrII:60889-62096 1.0000 100 chrII:89679-89966 1.0000 100 chrII:167917-168164 1.0000 100 chrII:181356-181591 1.0000 100 chrII:197289-197830 1.0000 100 chrII:226971-227349 1.0000 100 chrII:266229-267008 1.0000 100 chrII:326503-327026 1.0000 100 chrII:331763-332968 1.0000 100 chrII:347445-348388 1.0000 100 chrII:350564-350967 1.0000 100 chrII:405672-406220 1.0000 100 chrII:415514-415921 1.0000 100 chrII:477101-477423 1.0000 100 chrII:592929-593261 1.0000 100 chrII:604134-606066 1.0000 100 chrII:644961-645416 1.0000 100 chrIII:131-1260 1.0000 100 chrIII:90786-91098 1.0000 100 chrIII:123360-123806 1.0000 100 chrIII:127551-127858 1.0000 100 chrIII:142254-142974 1.0000 100 chrIII:149752-150161 1.0000 100 chrIII:151134-151561 1.0000 100 chrIII:163501-163829 1.0000 100 chrIII:168072-168529 1.0000 100 chrIII:178329-178771 1.0000 100 chrIII:227650-228203 1.0000 100 chrIII:295345-295919 1.0000 100 chrIII:308592-308965 1.0000 100 chrIV:83277-83928 1.0000 100 chrIV:117153-117526 1.0000 100 chrIV:130129-130990 1.0000 100 chrIV:221655-222339 1.0000 100 chrIV:229559-230404 1.0000 100 chrIV:308043-309560 1.0000 100 chrIV:321678-321933 1.0000 100 chrIV:340452-343137 1.0000 100 chrIV:358017-358582 1.0000 100 chrIV:359381-359763 1.0000 100 chrIV:410002-410449 1.0000 100 chrIV:411333-411594 1.0000 100 chrIV:434130-435114 1.0000 100 chrIV:437574-438487 1.0000 100 chrIV:488423-488973 1.0000 100 chrIV:490972-491231 1.0000 100 chrIV:519651-521106 1.0000 100 chrIV:555826-556425 1.0000 100 chrIV:568499-569198 1.0000 100 chrIV:578801-580411 1.0000 100 chrIV:619751-620160 1.0000 100 chrIV:667499-668552 1.0000 100 chrIV:802614-802839 1.0000 100 chrIV:884294-884742 1.0000 100 chrIV:945788-946618 1.0000 100 chrIV:992683-993212 1.0000 100 chrIV:1016956-1017484 1.0000 100 chrIV:1075354-1075893 1.0000 100 chrIV:1087550-1088104 1.0000 100 chrIV:1095008-1095733 1.0000 100 chrIV:1135641-1138765 1.0000 100 chrIV:1150697-1151114 1.0000 100 chrIV:1175576-1176094 1.0000 100 chrIV:1201550-1201932 1.0000 100 chrIV:1300974-1301313 1.0000 100 chrIV:1305404-1305812 1.0000 100 chrIV:1351870-1353150 1.0000 100 chrIV:1355750-1355959 1.0000 100 chrIV:1359441-1360805 1.0000 100 chrIV:1401290-1401565 1.0000 100 chrIV:1450776-1451213 1.0000 100 chrIV:1460994-1461848 1.0000 100 chrIX:67562-68490 1.0000 100 chrIX:99688-100139 1.0000 100 chrIX:174967-175193 1.0000 100 chrIX:183316-183672 1.0000 100 chrIX:197069-198148 1.0000 100 chrIX:210667-210904 1.0000 100 chrIX:248663-248940 1.0000 100 chrIX:254247-254517 1.0000 100 chrIX:257382-257826 1.0000 100 chrIX:299848-300461 1.0000 100 chrIX:316112-316555 1.0000 100 chrIX:324019-324526 1.0000 100 chrIX:325581-326111 1.0000 100 chrIX:336119-336640 1.0000 100 chrIX:370266-370582 1.0000 100 chrV:53550-54030 1.0000 100 chrV:61068-62104 1.0000 100 chrV:85196-85401 1.0000 100 chrV:85556-86140 1.0000 100 chrV:86426-86782 1.0000 100 chrV:86931-87176 1.0000 100 chrV:99681-100273 1.0000 100 chrV:117186-118285 1.0000 100 chrV:130824-131385 1.0000 100 chrV:135214-136207 1.0000 100 chrV:138492-139934 1.0000 100 chrV:140482-140859 1.0000 100 chrV:176295-177361 1.0000 100 chrV:249689-251041 1.0000 100 chrV:287946-289024 1.0000 100 chrV:305824-306926 1.0000 100 chrV:311760-312273 1.0000 100 chrV:354810-355310 1.0000 100 chrV:355670-355837 1.0000 100 chrV:396122-396553 1.0000 100 chrV:423103-423455 1.0000 100 chrV:431036-432200 1.0000 100 chrV:434425-435140 1.0000 100 chrV:435322-435936 1.0000 100 chrV:438262-438953 1.0000 100 chrV:441573-442625 1.0000 100 chrV:442882-443332 1.0000 100 chrV:469079-469608 1.0000 100 chrV:485611-487579 1.0000 100 chrV:550899-551852 1.0000 100 chrVI:4589-4754 1.0000 100 chrVI:64175-65556 1.0000 100 chrVI:95512-95793 1.0000 100 chrVI:101376-101720 1.0000 100 chrVI:137326-137719 1.0000 100 chrVI:157905-158197 1.0000 100 chrVI:162081-162370 1.0000 100 chrVI:166841-167669 1.0000 100 chrVI:180676-181967 1.0000 100 chrVI:191296-191744 1.0000 100 chrVI:210465-211048 1.0000 100 chrVI:221750-222065 1.0000 100 chrVI:223924-224136 1.0000 100 chrVI:226500-226923 1.0000 100 chrVII:110320-110782 1.0000 100 chrVII:115216-115718 1.0000 100 chrVII:121948-122686 1.0000 100 chrVII:148278-149615 1.0000 100 chrVII:185024-185793 1.0000 100 chrVII:205126-205738 1.0000 100 chrVII:254148-254702 1.0000 100 chrVII:276722-278707 1.0000 100 chrVII:287021-288189 1.0000 100 chrVII:310483-312734 1.0000 100 chrVII:319208-320326 1.0000 100 chrVII:328403-329348 1.0000 100 chrVII:364884-366646 1.0000 100 chrVII:405467-406038 1.0000 100 chrVII:411649-412737 1.0000 100 chrVII:422910-423657 1.0000 100 chrVII:438599-438859 1.0000 100 chrVII:440641-440918 1.0000 100 chrVII:479679-482658 1.0000 100 chrVII:531295-531799 1.0000 100 chrVII:534525-535194 1.0000 100 chrVII:541717-542118 1.0000 100 chrVII:544047-544840 1.0000 100 chrVII:555134-555905 1.0000 100 chrVII:648748-649332 1.0000 100 chrVII:661541-661921 1.0000 100 chrVII:700455-701162 1.0000 100 chrVII:706934-707275 1.0000 100 chrVII:726349-726713 1.0000 100 chrVII:730970-731372 1.0000 100 chrVII:736203-737156 1.0000 100 chrVII:738860-739611 1.0000 100 chrVII:774148-774572 1.0000 100 chrVII:779402-779766 1.0000 100 chrVII:788347-788732 1.0000 100 chrVII:794018-794500 1.0000 100 chrVII:823351-823687 1.0000 100 chrVII:828450-828982 1.0000 100 chrVII:845281-846321 1.0000 100 chrVII:857128-857652 1.0000 100 chrVII:876172-876727 1.0000 100 chrVII:878578-879028 1.0000 100 chrVII:882788-883890 1.0000 100 chrVII:930091-931138 1.0000 100 chrVII:1003942-1004403 1.0000 100 chrVIII:62414-62893 1.0000 100 chrVIII:74919-75918 1.0000 100 chrVIII:103667-104364 1.0000 100 chrVIII:115800-116296 1.0000 100 chrVIII:125936-126294 1.0000 100 chrVIII:132859-133396 1.0000 100 chrVIII:134024-134611 1.0000 100 chrVIII:134849-135033 1.0000 100 chrVIII:145433-146768 1.0000 100 chrVIII:149028-149199 1.0000 100 chrVIII:175104-175731 1.0000 100 chrVIII:237755-238075 1.0000 100 chrVIII:296952-297230 1.0000 100 chrVIII:358141-358748 1.0000 100 chrVIII:382949-383309 1.0000 100 chrVIII:388711-389213 1.0000 100 chrVIII:452049-452872 1.0000 100 chrVIII:475553-475898 1.0000 100 chrVIII:505844-506521 1.0000 100 chrVIII:556952-557154 1.0000 100 chrX:59088-59503 1.0000 100 chrX:72869-74348 1.0000 100 chrX:74884-75668 1.0000 100 chrX:75841-76511 1.0000 100 chrX:90047-90403 1.0000 100 chrX:115787-116294 1.0000 100 chrX:157500-157868 1.0000 100 chrX:168308-170114 1.0000 100 chrX:196197-197510 1.0000 100 chrX:204533-204979 1.0000 100 chrX:232803-234079 1.0000 100 chrX:348833-349440 1.0000 100 chrX:354160-354507 1.0000 100 chrX:355207-355742 1.0000 100 chrX:374213-374903 1.0000 100 chrX:378202-378569 1.0000 100 chrX:390916-391303 1.0000 100 chrX:396166-397073 1.0000 100 chrX:414664-415224 1.0000 100 chrX:415470-416503 1.0000 100 chrX:422727-423237 1.0000 100 chrX:424352-424708 1.0000 100 chrX:517668-518060 1.0000 100 chrX:523497-524439 1.0000 100 chrX:526242-526703 1.0000 100 chrX:531529-532206 1.0000 100 chrX:538527-538768 1.0000 100 chrX:541005-542352 1.0000 100 chrX:542752-543552 1.0000 100 chrX:607889-608130 1.0000 100 chrX:617710-618496 1.0000 100 chrX:650712-651587 1.0000 100 chrX:703284-703610 1.0000 100 chrXI:777-1085 1.0000 100 chrXI:46724-47150 1.0000 100 chrXI:74415-74782 1.0000 100 chrXI:84069-84421 1.0000 100 chrXI:108718-109043 1.0000 100 chrXI:140824-141491 1.0000 100 chrXI:157703-159372 1.0000 100 chrXI:159544-159733 1.0000 100 chrXI:162439-162658 1.0000 100 chrXI:302712-303715 1.0000 100 chrXI:307970-308407 1.0000 100 chrXI:313267-313604 1.0000 100 chrXI:379504-379922 1.0000 100 chrXI:457594-458826 1.0000 100 chrXI:490755-491899 1.0000 100 chrXI:513121-513507 1.0000 100 chrXI:517802-518055 1.0000 100 chrXI:578772-579399 1.0000 100 chrXI:618028-619385 1.0000 100 chrXI:666624-666775 1.0000 100 chrXII:48732-49082 1.0000 100 chrXII:92419-92660 1.0000 100 chrXII:167787-168223 1.0000 100 chrXII:214684-215061 1.0000 100 chrXII:231722-234075 1.0000 100 chrXII:241608-241963 1.0000 100 chrXII:242265-243434 1.0000 100 chrXII:262851-263937 1.0000 100 chrXII:366038-366537 1.0000 100 chrXII:374216-374637 1.0000 100 chrXII:426921-428120 1.0000 100 chrXII:448536-448961 1.0000 100 chrXII:459651-460082 1.0000 100 chrXII:460436-460679 1.0000 100 chrXII:497846-500264 1.0000 100 chrXII:521120-521713 1.0000 100 chrXII:592386-592713 1.0000 100 chrXII:605168-605960 1.0000 100 chrXII:628221-628943 1.0000 100 chrXII:636794-639944 1.0000 100 chrXII:656841-657186 1.0000 100 chrXII:673513-674855 1.0000 100 chrXII:713136-713834 1.0000 100 chrXII:732008-732285 1.0000 100 chrXII:734637-734923 1.0000 100 chrXII:780895-781855 1.0000 100 chrXII:783919-784517 1.0000 100 chrXII:793733-795262 1.0000 100 chrXII:796274-796813 1.0000 100 chrXII:797017-797349 1.0000 100 chrXII:818508-819116 1.0000 100 chrXII:875247-875682 1.0000 100 chrXII:897732-898958 1.0000 100 chrXII:922128-922686 1.0000 100 chrXII:932117-932542 1.0000 100 chrXII:962892-963244 1.0000 100 chrXII:975807-976093 1.0000 100 chrXII:1018091-1019436 1.0000 100 chrXII:1028229-1028523 1.0000 100 chrXII:1051709-1052222 1.0000 100 chrXIII:91640-92092 1.0000 100 chrXIII:131379-132191 1.0000 100 chrXIII:145715-146247 1.0000 100 chrXIII:168690-169011 1.0000 100 chrXIII:195942-196307 1.0000 100 chrXIII:224088-224466 1.0000 100 chrXIII:225095-225686 1.0000 100 chrXIII:259045-259410 1.0000 100 chrXIII:290454-291288 1.0000 100 chrXIII:296785-298867 1.0000 100 chrXIII:320845-321630 1.0000 100 chrXIII:352082-352369 1.0000 100 chrXIII:362948-363316 1.0000 100 chrXIII:368574-370548 1.0000 100 chrXIII:372229-372634 1.0000 100 chrXIII:378906-379589 1.0000 100 chrXIII:420368-420770 1.0000 100 chrXIII:463442-463830 1.0000 100 chrXIII:480436-480833 1.0000 100 chrXIII:504650-505227 1.0000 100 chrXIII:551410-551775 1.0000 100 chrXIII:572411-573130 1.0000 100 chrXIII:585887-586894 1.0000 100 chrXIII:731588-733428 1.0000 100 chrXIII:747786-748122 1.0000 100 chrXIII:754435-755245 1.0000 100 chrXIII:808023-808525 1.0000 100 chrXIII:837738-838429 1.0000 100 chrXIV:63158-64551 1.0000 100 chrXIV:95697-96435 1.0000 100 chrXIV:102584-103121 1.0000 100 chrXIV:104611-105066 1.0000 100 chrXIV:241275-241842 1.0000 100 chrXIV:302683-303953 1.0000 100 chrXIV:330845-331089 1.0000 100 chrXIV:374685-375089 1.0000 100 chrXIV:442860-444348 1.0000 100 chrXIV:444518-444826 1.0000 100 chrXIV:493883-495054 1.0000 100 chrXIV:495245-496074 1.0000 100 chrXIV:546485-547352 1.0000 100 chrXIV:560142-560788 1.0000 100 chrXIV:568053-568467 1.0000 100 chrXIV:569641-570047 1.0000 100 chrXIV:602096-602552 1.0000 100 chrXIV:631505-632008 1.0000 100 chrXIV:632487-632897 1.0000 100 chrXIV:725594-726343 1.0000 100 chrXIV:783907-784312 1.0000 100 chrXV:79743-80102 1.0000 100 chrXV:92772-94750 1.0000 100 chrXV:110948-111513 1.0000 100 chrXV:113102-113351 1.0000 100 chrXV:113498-113874 1.0000 100 chrXV:161137-161550 1.0000 100 chrXV:168004-169238 1.0000 100 chrXV:216298-216624 1.0000 100 chrXV:226463-226853 1.0000 100 chrXV:228023-228563 1.0000 100 chrXV:251480-252329 1.0000 100 chrXV:252498-252695 1.0000 100 chrXV:274511-274994 1.0000 100 chrXV:281744-282396 1.0000 100 chrXV:288081-288372 1.0000 100 chrXV:300895-301863 1.0000 100 chrXV:339778-340572 1.0000 100 chrXV:353957-354294 1.0000 100 chrXV:438490-438972 1.0000 100 chrXV:444644-445852 1.0000 100 chrXV:464273-464842 1.0000 100 chrXV:487444-487707 1.0000 100 chrXV:505140-505482 1.0000 100 chrXV:505775-506728 1.0000 100 chrXV:571614-572155 1.0000 100 chrXV:594320-594606 1.0000 100 chrXV:663485-664074 1.0000 100 chrXV:678222-679113 1.0000 100 chrXV:710074-710527 1.0000 100 chrXV:711881-712676 1.0000 100 chrXV:779752-780972 1.0000 100 chrXV:853997-854784 1.0000 100 chrXV:866534-867930 1.0000 100 chrXV:976383-976705 1.0000 100 chrXV:978877-979170 1.0000 100 chrXV:980590-981049 1.0000 100 chrXV:1003994-1004319 1.0000 100 chrXV:1025630-1027123 1.0000 100 chrXV:1027632-1029649 1.0000 100 chrXVI:55845-56351 1.0000 100 chrXVI:76401-77238 1.0000 100 chrXVI:188142-189231 1.0000 100 chrXVI:209869-210443 1.0000 100 chrXVI:280876-281892 1.0000 100 chrXVI:302718-302928 1.0000 100 chrXVI:338802-339117 1.0000 100 chrXVI:360054-360325 1.0000 100 chrXVI:378709-378984 1.0000 100 chrXVI:404624-406832 1.0000 100 chrXVI:432571-434388 1.0000 100 chrXVI:435680-436136 1.0000 100 chrXVI:520170-520486 1.0000 100 chrXVI:559321-560450 1.0000 100 chrXVI:572072-572504 1.0000 100 chrXVI:581787-582446 1.0000 100 chrXVI:622078-622826 1.0000 100 chrXVI:689344-689885 1.0000 100 chrXVI:699889-700350 1.0000 100 chrXVI:731953-732300 1.0000 100 chrXVI:744111-744532 1.0000 100 chrXVI:768801-769466 1.0000 100 chrXVI:775635-776083 1.0000 100 chrXVI:794071-794733 1.0000 100 chrXVI:810578-810861 1.0000 100 chrXVI:819364-820302 1.0000 100 chrXVI:860125-860612 1.0000 100 chrXVI:879762-880528 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SWR1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SWR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SWR1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 412 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 41200 N= 412 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.309 C 0.191 G 0.191 T 0.309 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SWR1/background): A 0.314 C 0.186 G 0.186 T 0.314 ******************************************************************************** ******************************************************************************** MOTIF RAGRTCCBSGGTTCGATYCCSVGHGRGRG MEME-1 width = 29 sites = 59 llr = 1174 E-value = 8.1e-233 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGRTCCBSGGTTCGATYCCSVGHGRGRG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 57243:3:13::::2a2::::2:213241 pos.-specific C 112:17644::::a::25a7541421212 probability G 3266::1457a:::8:2:::546:54655 matrix T 1:1:72:31::aa:::45:3::34221:2 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 * ** * * Relative 1.5 * ****** * Entropy 1.2 * * ****** * (28.7 bits) 1.0 * ** ******* *** * 0.7 ** ** ******** ****** * 0.5 *************** ******** *** 0.2 **************** ************ 0.0 ----------------------------- Multilevel AAGGTCCCGGGTTCGATTCCCGGCGGGGG consensus GG AATAGCA A C TGCTTCA AC sequence T A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCCBSGGTTCGATYCCSVGHGRGRG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIII:123360-123806 - 46 2.60e-13 TAGGGTGCGG GAGGTCCCGGGTTCGAGTCCCGGCTCGCC CCACATTGTT chrXVI:581787-582446 + 38 5.61e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTTTCTTTTT chrXIII:480436-480833 - 39 5.61e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTTCTTTTTT chrVII:876172-876727 + 37 5.61e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTTTCTTTTT chrVII:121948-122686 + 44 5.61e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTATTCTTTT chrVI:226500-226923 - 29 5.61e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTTATCTCTT chrIV:1351870-1353150 - 8 5.61e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTATCTT chrIV:1016956-1017484 - 39 8.46e-12 TTCTCACCGT GGAGACCGGGGTTCGACTCCCCGCTTCGG AGTTTCTTTT chrVIII:475553-475898 - 33 9.68e-12 TCACACGGCA AAGGTCCCGAGTTCGATCCTCGGTTGGAA CATTTTAACA chrXVI:572072-572504 + 71 1.11e-11 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG C chrXV:226463-226853 - 5 1.11e-11 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG CAAA chrX:531529-532206 + 51 1.11e-11 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG CAGTTTCTTT chrIV:83277-83928 + 36 1.11e-11 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG CAAGTTTAAT chrIV:667499-668552 - 34 1.44e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGAC CATTTTTATT chrII:197289-197830 + 28 1.44e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGAC CATTTTTTTG chrXIII:808023-808525 - 24 2.12e-11 TTCTGATCCG AACAACCCCAGTTCGAATCCGGGTGGGAC CTTCCCTTCA chrV:249689-251041 + 12 2.73e-11 TTTTGATCCG GACAACCCCGGTTCGAATCCGGGTAGGAC CTTTTTTATT chrIV:802614-802839 - 57 2.73e-11 TTTTGATCCG GACAACCCCGGTTCGAATCCGGGTAGGAC CTCTTTTTAT chrIII:168072-168529 - 53 2.73e-11 TTTTGATCCG GACAACCCCGGTTCGAATCCGGGTAGGAC CTTTTTTTGA chrXIII:290454-291288 + 21 3.50e-11 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTTTTCTTT chrVII:541717-542118 + 24 3.50e-11 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTGTTCTTT chrII:644961-645416 + 70 3.50e-11 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AG chrXIII:420368-420770 - 71 6.38e-11 G AACGTCCCCAGTTCGATCCTGGGCGAAAT CATTTTTATC chrXIII:372229-372634 - 66 6.38e-11 ACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CATTTTTTTA chrXI:379504-379922 + 60 6.38e-11 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CAATTAATTT chrXI:307970-308407 - 8 6.38e-11 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CAATTTT chrX:378202-378569 + 68 6.38e-11 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CAAT chrVII:823351-823687 + 56 6.38e-11 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CATTTTTTGA chrVII:828450-828982 - 59 9.04e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAG TGCTTTTTTT chrII:405672-406220 + 23 9.04e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAG TGCTTTGTTT chrXV:438490-438972 + 27 1.01e-10 AGGATACCGA AATGTCAGGGGTTCGAGCCCCCTATGAGG AGTTCTTTAT chrXII:875247-875682 + 27 1.01e-10 AGGATACCGA AATGTCAGGGGTTCGAGCCCCCTATGAGG AGTTCTTTAC chrV:130824-131385 - 30 1.13e-10 TTTTGATCCG AACAACCCCGGTTCGAATCCGGGTAAGAC CTATTTTTTT chrXII:214684-215061 - 63 1.27e-10 TGCAAGGAA GAGGTCATCGGTTCGATTCCGGTTGCGTC CATTTATTTT chrV:311760-312273 - 59 1.27e-10 TTGCAAGGAA GAGGTCATCGGTTCGATTCCGGTTGCGTC CAATGAAATC chrXV:464273-464842 + 14 1.77e-10 AAGCATGCGA GAGGCCCTGGGTTCAATTCCCAGCTCGCC CCTTTTATTT chrXIV:104611-105066 + 59 7.49e-10 TAGTAATGTG GAGATCATCGGTTCAAATCCGATTGGAAG CATATTATTT chrIX:174967-175193 + 43 7.49e-10 TAGTAATGTG GAGATCATCGGTTCAAATCCGATTGGAAG CAATTTTTTT chrXIII:463442-463830 + 9 1.32e-09 GTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGATTTTTTT chrXI:513121-513507 - 70 1.32e-09 TG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGATTTTTTA chrX:204533-204979 + 70 1.32e-09 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AG chrIX:336119-336640 - 22 1.32e-09 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGATTTTTTT chrX:422727-423237 + 47 1.91e-09 TCATAATCTG AAGGTCGAGAGTTCGAACCTCCCCTGGAG CACATTTTCT chrXII:374216-374637 + 21 3.23e-09 TACGAACCAG AAGATTCCAGGTTCAAGTCCTGGCGGGGA AGATTTTTTT chrIV:619751-620160 - 66 3.23e-09 AACCAG AAGATTCCAGGTTCAAGTCCTGGCGGGGA AGATTTTTTA chrXVI:810578-810861 + 50 3.84e-09 TGTTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGT CGTAATTTTT chrVII:730970-731372 + 59 3.84e-09 TGTTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGT CGTTTTTTGC chrVI:137326-137719 - 16 3.84e-09 TGTTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGT CGTTTTTTTA chrXIII:168690-169011 + 53 4.54e-09 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGA GATATTTTTT chrX:354160-354507 + 19 4.54e-09 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGA GATTTTTTTA chrX:517668-518060 - 1 4.93e-09 TCATAACCCT GATGTCCTCGGATCGAAACCGAGCGGCGC chrIII:149752-150161 + 55 4.93e-09 TCATAACCCT GATGTCCTCGGATCGAAACCGAGCGGCGC TATTAAATTT chrXVI:435680-436136 - 37 5.35e-09 TGCAAATCTG TTGGTCCTTAGTTCGATCCTGAGTGCGAG CTTTCTTTTT chrVII:706934-707275 - 56 5.35e-09 TGCAAATCTG TTGGTCCTTAGTTCGATCCTGAGTGCGAG CTTTTTATTA chrIV:1095008-1095733 - 52 2.28e-08 AAGATATCTG GAGGTCCTGTGTTCGATCCACAGAGTTCG CATTTTTATT chrXVI:744111-744532 + 54 2.82e-08 TTGTAATGCA AAGGTCGTTAGTTCAATTCTGACAGGTGG CAAAATTTTT chrXIII:362948-363316 + 23 5.87e-08 TTGTGGCCGA TGAAACCCTGGTTCGATTCTAGGAGATGG CATTTTCTTT chrXI:313267-313604 - 18 5.87e-08 TTGTGGCCGA TGAAACCCTGGTTCGATTCTAGGAGATGG CATTTTATTT chrXI:84069-84421 - 65 1.30e-07 TTACTGA AGGATGCGAGGTTCGAACTCGCGCGGACA ACCGTCCAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCCBSGGTTCGATYCCSVGHGRGRG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123360-123806 2.6e-13 45_[-1]_26 chrXVI:581787-582446 5.6e-12 37_[+1]_34 chrXIII:480436-480833 5.6e-12 38_[-1]_33 chrVII:876172-876727 5.6e-12 36_[+1]_35 chrVII:121948-122686 5.6e-12 43_[+1]_28 chrVI:226500-226923 5.6e-12 28_[-1]_43 chrIV:1351870-1353150 5.6e-12 7_[-1]_64 chrIV:1016956-1017484 8.5e-12 38_[-1]_33 chrVIII:475553-475898 9.7e-12 32_[-1]_39 chrXVI:572072-572504 1.1e-11 70_[+1]_1 chrXV:226463-226853 1.1e-11 4_[-1]_67 chrX:531529-532206 1.1e-11 50_[+1]_21 chrIV:83277-83928 1.1e-11 35_[+1]_36 chrIV:667499-668552 1.4e-11 33_[-1]_38 chrII:197289-197830 1.4e-11 27_[+1]_44 chrXIII:808023-808525 2.1e-11 23_[-1]_48 chrV:249689-251041 2.7e-11 11_[+1]_60 chrIV:802614-802839 2.7e-11 56_[-1]_15 chrIII:168072-168529 2.7e-11 52_[-1]_19 chrXIII:290454-291288 3.5e-11 20_[+1]_51 chrVII:541717-542118 3.5e-11 23_[+1]_48 chrII:644961-645416 3.5e-11 69_[+1]_2 chrXIII:420368-420770 6.4e-11 70_[-1]_1 chrXIII:372229-372634 6.4e-11 65_[-1]_6 chrXI:379504-379922 6.4e-11 59_[+1]_12 chrXI:307970-308407 6.4e-11 7_[-1]_64 chrX:378202-378569 6.4e-11 67_[+1]_4 chrVII:823351-823687 6.4e-11 55_[+1]_16 chrVII:828450-828982 9e-11 58_[-1]_13 chrII:405672-406220 9e-11 22_[+1]_49 chrXV:438490-438972 1e-10 26_[+1]_45 chrXII:875247-875682 1e-10 26_[+1]_45 chrV:130824-131385 1.1e-10 29_[-1]_42 chrXII:214684-215061 1.3e-10 62_[-1]_9 chrV:311760-312273 1.3e-10 58_[-1]_13 chrXV:464273-464842 1.8e-10 13_[+1]_58 chrXIV:104611-105066 7.5e-10 58_[+1]_13 chrIX:174967-175193 7.5e-10 42_[+1]_29 chrXIII:463442-463830 1.3e-09 8_[+1]_63 chrXI:513121-513507 1.3e-09 69_[-1]_2 chrX:204533-204979 1.3e-09 69_[+1]_2 chrIX:336119-336640 1.3e-09 21_[-1]_50 chrX:422727-423237 1.9e-09 46_[+1]_25 chrXII:374216-374637 3.2e-09 20_[+1]_51 chrIV:619751-620160 3.2e-09 65_[-1]_6 chrXVI:810578-810861 3.8e-09 49_[+1]_22 chrVII:730970-731372 3.8e-09 58_[+1]_13 chrVI:137326-137719 3.8e-09 15_[-1]_56 chrXIII:168690-169011 4.5e-09 52_[+1]_19 chrX:354160-354507 4.5e-09 18_[+1]_53 chrX:517668-518060 4.9e-09 [-1]_71 chrIII:149752-150161 4.9e-09 54_[+1]_17 chrXVI:435680-436136 5.4e-09 36_[-1]_35 chrVII:706934-707275 5.4e-09 55_[-1]_16 chrIV:1095008-1095733 2.3e-08 51_[-1]_20 chrXVI:744111-744532 2.8e-08 53_[+1]_18 chrXIII:362948-363316 5.9e-08 22_[+1]_49 chrXI:313267-313604 5.9e-08 17_[-1]_54 chrXI:84069-84421 1.3e-07 64_[-1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCCBSGGTTCGATYCCSVGHGRGRG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGRTCCBSGGTTCGATYCCSVGHGRGRG width=29 seqs=59 chrIII:123360-123806 ( 46) GAGGTCCCGGGTTCGAGTCCCGGCTCGCC 1 chrXVI:581787-582446 ( 38) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrXIII:480436-480833 ( 39) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrVII:876172-876727 ( 37) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrVII:121948-122686 ( 44) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrVI:226500-226923 ( 29) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrIV:1351870-1353150 ( 8) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrIV:1016956-1017484 ( 39) GGAGACCGGGGTTCGACTCCCCGCTTCGG 1 chrVIII:475553-475898 ( 33) AAGGTCCCGAGTTCGATCCTCGGTTGGAA 1 chrXVI:572072-572504 ( 71) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrXV:226463-226853 ( 5) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrX:531529-532206 ( 51) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrIV:83277-83928 ( 36) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrIV:667499-668552 ( 34) GGGATCAGCGGTTCGATCCCGCTAGAGAC 1 chrII:197289-197830 ( 28) GGGATCAGCGGTTCGATCCCGCTAGAGAC 1 chrXIII:808023-808525 ( 24) AACAACCCCAGTTCGAATCCGGGTGGGAC 1 chrV:249689-251041 ( 12) GACAACCCCGGTTCGAATCCGGGTAGGAC 1 chrIV:802614-802839 ( 57) GACAACCCCGGTTCGAATCCGGGTAGGAC 1 chrIII:168072-168529 ( 53) GACAACCCCGGTTCGAATCCGGGTAGGAC 1 chrXIII:290454-291288 ( 21) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrVII:541717-542118 ( 24) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrII:644961-645416 ( 70) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrXIII:420368-420770 ( 71) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrXIII:372229-372634 ( 66) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrXI:379504-379922 ( 60) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrXI:307970-308407 ( 8) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrX:378202-378569 ( 68) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrVII:823351-823687 ( 56) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrVII:828450-828982 ( 59) AAGATTATGGGTTCGACCCCCATCGTGAG 1 chrII:405672-406220 ( 23) AAGATTATGGGTTCGACCCCCATCGTGAG 1 chrXV:438490-438972 ( 27) AATGTCAGGGGTTCGAGCCCCCTATGAGG 1 chrXII:875247-875682 ( 27) AATGTCAGGGGTTCGAGCCCCCTATGAGG 1 chrV:130824-131385 ( 30) AACAACCCCGGTTCGAATCCGGGTAAGAC 1 chrXII:214684-215061 ( 63) GAGGTCATCGGTTCGATTCCGGTTGCGTC 1 chrV:311760-312273 ( 59) GAGGTCATCGGTTCGATTCCGGTTGCGTC 1 chrXV:464273-464842 ( 14) GAGGCCCTGGGTTCAATTCCCAGCTCGCC 1 chrXIV:104611-105066 ( 59) GAGATCATCGGTTCAAATCCGATTGGAAG 1 chrIX:174967-175193 ( 43) GAGATCATCGGTTCAAATCCGATTGGAAG 1 chrXIII:463442-463830 ( 9) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrXI:513121-513507 ( 70) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrX:204533-204979 ( 70) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrIX:336119-336640 ( 22) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrX:422727-423237 ( 47) AAGGTCGAGAGTTCGAACCTCCCCTGGAG 1 chrXII:374216-374637 ( 21) AAGATTCCAGGTTCAAGTCCTGGCGGGGA 1 chrIV:619751-620160 ( 66) AAGATTCCAGGTTCAAGTCCTGGCGGGGA 1 chrXVI:810578-810861 ( 50) AAGATCGTGAGTTCAACCCTCACTGGGGT 1 chrVII:730970-731372 ( 59) AAGATCGTGAGTTCAACCCTCACTGGGGT 1 chrVI:137326-137719 ( 16) AAGATCGTGAGTTCAACCCTCACTGGGGT 1 chrXIII:168690-169011 ( 53) GAGATCGGGCGTTCGACTCGCCCCCGGGA 1 chrX:354160-354507 ( 19) GAGATCGGGCGTTCGACTCGCCCCCGGGA 1 chrX:517668-518060 ( 1) GATGTCCTCGGATCGAAACCGAGCGGCGC 1 chrIII:149752-150161 ( 55) GATGTCCTCGGATCGAAACCGAGCGGCGC 1 chrXVI:435680-436136 ( 37) TTGGTCCTTAGTTCGATCCTGAGTGCGAG 1 chrVII:706934-707275 ( 56) TTGGTCCTTAGTTCGATCCTGAGTGCGAG 1 chrIV:1095008-1095733 ( 52) GAGGTCCTGTGTTCGATCCACAGAGTTCG 1 chrXVI:744111-744532 ( 54) AAGGTCGTTAGTTCAATTCTGACAGGTGG 1 chrXIII:362948-363316 ( 23) TGAAACCCTGGTTCGATTCTAGGAGATGG 1 chrXI:313267-313604 ( 18) TGAAACCCTGGTTCGATTCTAGGAGATGG 1 chrXI:84069-84421 ( 65) AGGATGCGAGGTTCGAACTCGCGCGGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCCBSGGTTCGATYCCSVGHGRGRG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 29664 bayes= 11.1116 E= 8.1e-233 54 -145 87 -121 111 -145 25 -321 -89 0 163 -221 18 -1253 179 -1253 -30 -113 -1253 107 -1253 200 -345 -40 -21 171 -65 -1253 -421 94 94 -21 -263 107 135 -189 -30 -245 190 -421 -1253 -1253 243 -1253 -321 -1253 -1253 162 -1253 -1253 -1253 167 -1253 243 -1253 -1253 -51 -1253 207 -1253 167 -1253 -1253 -1253 -75 0 0 49 -321 130 -1253 69 -1253 240 -1253 -421 -421 187 -245 -21 -321 135 130 -321 -40 100 107 -1253 -1253 -65 171 -21 -40 107 -1253 25 -140 13 140 -75 -12 -87 119 -75 -75 -13 163 -221 18 -46 135 -321 -163 25 150 -104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCCBSGGTTCGATYCCSVGHGRGRG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 59 E= 8.1e-233 0.457627 0.067797 0.338983 0.135593 0.677966 0.067797 0.220339 0.033898 0.169492 0.186441 0.576271 0.067797 0.355932 0.000000 0.644068 0.000000 0.254237 0.084746 0.000000 0.661017 0.000000 0.745763 0.016949 0.237288 0.271186 0.610169 0.118644 0.000000 0.016949 0.355932 0.355932 0.271186 0.050847 0.389831 0.474576 0.084746 0.254237 0.033898 0.694915 0.016949 0.000000 0.000000 1.000000 0.000000 0.033898 0.000000 0.000000 0.966102 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.220339 0.000000 0.779661 0.000000 1.000000 0.000000 0.000000 0.000000 0.186441 0.186441 0.186441 0.440678 0.033898 0.457627 0.000000 0.508475 0.000000 0.983051 0.000000 0.016949 0.016949 0.677966 0.033898 0.271186 0.033898 0.474576 0.457627 0.033898 0.237288 0.372881 0.389831 0.000000 0.000000 0.118644 0.610169 0.271186 0.237288 0.389831 0.000000 0.372881 0.118644 0.203390 0.491525 0.186441 0.288136 0.101695 0.423729 0.186441 0.186441 0.169492 0.576271 0.067797 0.355932 0.135593 0.474576 0.033898 0.101695 0.220339 0.525424 0.152542 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCCBSGGTTCGATYCCSVGHGRGRG MEME-1 regular expression -------------------------------------------------------------------------------- [AG][AG]G[GA][TA][CT][CA][CGT][GC][GA]GTTC[GA]AT[TC]C[CT][CG][GCA][GT][CTA][GC][GA]G[GA][GC] -------------------------------------------------------------------------------- Time 160.47 secs. ******************************************************************************** ******************************************************************************** MOTIF WGSBYNYKTGGCBYAGTKGKTARRGSS MEME-2 width = 27 sites = 64 llr = 1132 E-value = 1.3e-206 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGSBYNYKTGGCBYAGTKGKTARRGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 5:1:1212:3:::1a1::::36551:: pos.-specific C 1:54334::::753:::2::1:12164 probability G :a531224:8a:32:9:5a51:43734 matrix T 4::34335a::334::a3:463:1111 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 * * * ** * Relative 1.5 * **** *** * Entropy 1.2 * **** *** * * (25.5 bits) 1.0 ** **** *** * ** 0.7 ** **** *** ** *** 0.5 **** ****** ****** ** *** 0.2 ***** ********************* 0.0 --------------------------- Multilevel AGGCTTCTTGGCCTAGTGGGTAAAGCG consensus T CTCCTG A TGC T TATGG GC sequence G A T C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYKTGGCBYAGTKGKTARRGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chrXII:656841-657186 - 18 3.01e-12 ACAAGAAAAT TGGGCGTGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVII:774148-774572 + 38 3.01e-12 ATCAATTAAT TGGGCGTGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrIV:1305404-1305812 + 71 3.67e-12 ATACAAATTA AGGCAACTTGGCCGAGTGGTTAAGGCG AAA chrV:550899-551852 - 8 5.39e-12 TACAGATTAC AGGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGC chrXIII:259045-259410 - 37 6.50e-12 CAAGTTAGTA TGGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:167787-168223 - 45 6.50e-12 AATAGTCATA TGGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrVIII:132859-133396 - 5 6.50e-12 ATATAATAAG TGGCAACTTGGCCGAGTGGTTAAGGCG AAAG chrV:86426-86782 + 49 6.50e-12 CAATGAGTTA TGGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXIV:602096-602552 + 37 9.36e-12 CAGATAACAA TGGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:734637-734923 + 71 9.36e-12 CAACAAAGTT TGGTCTCTTGGCCCAGTTGGTTAAGGC ACC chrIX:183316-183672 - 44 9.36e-12 AACAAATTCC TGGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIII:320845-321630 - 7 1.58e-11 CAATACAAAT CGGGCGTGTGGCGTAGTCGGTAGCGCG CTCCCT chrV:287946-289024 - 64 2.22e-11 TCATAATGAT AGGCACTATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrIII:227650-228203 + 65 3.60e-11 CAAATCGAAA TGGCACTATGGCCGAGTGGTTAAGGCG AGAGACTCG chrX:414664-415224 + 71 1.58e-10 TCAACGAATT AGCCTTGTTGGCGCAATCGGTAGCGCG TAT chrVII:121948-122686 + 1 1.58e-10 . AGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1351870-1353150 - 53 1.58e-10 CCAACGAAAT AGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1201550-1201932 + 58 1.58e-10 ACAAATAAAT AGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIII:151134-151561 - 34 1.58e-10 ATAATTAAAG AGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXIV:104611-105066 + 16 2.08e-10 TCAAGTTCTG AGCTTCTATGGCCAAGTTGGTAAGGCG CCACACTAGT chrVI:226500-226923 - 74 2.38e-10 . TGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXV:353957-354294 - 13 3.10e-10 AACGGTTTAC TGCTTCTATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIV:1150697-1151114 - 61 3.10e-10 AAAGTGTTTC AGTCCCAGTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrXI:379504-379922 + 16 5.15e-10 ACAGATTAAT AGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378202-378569 + 24 5.15e-10 ATAAATTAAT AGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:307970-308407 - 54 7.43e-10 AACAATTAAG TGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823351-823687 + 12 7.43e-10 CCAATAAGAG TGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIV:374685-375089 + 31 1.49e-09 CAGAAAAATA AGCGGACTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVII:730970-731372 + 15 2.58e-09 ATAGTCAAAA AGACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIV:1175576-1176094 + 43 3.18e-09 TACAAAACAA AGCTTCAGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrVIII:237755-238075 - 49 3.53e-09 ACAAATAGTA AGCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVI:137326-137719 - 62 3.53e-09 CAAAAGTGAC TGACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIII:127551-127858 + 61 3.53e-09 CAAGATAAAA TGACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrII:36244-36543 + 54 3.53e-09 ATTAGTTGTA AGCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrX:422727-423237 + 4 4.33e-09 GTA TGCTTCAGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrX:390916-391303 - 31 4.33e-09 CAAGAAATAG TGCTTCAGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXVI:860125-860612 + 60 4.79e-09 GTAAATAACA AGCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:226463-226853 - 48 4.79e-09 CAAGAAATTC AGCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrX:531529-532206 + 10 4.79e-09 CAATTAGTG AGCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:440641-440918 - 53 4.79e-09 ATAAAATATA TGCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVI:162081-162370 + 52 4.79e-09 CAAGAAAACA AGCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXI:84069-84421 + 12 7.10e-09 AAAATTTGTA TGGAGGGTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:424352-424708 - 10 7.10e-09 TTAAATAAGA TGGAGGGTTGGCCGAGTGGTCTAAGGC GGCAGACTT chrVII:115216-115718 + 70 7.81e-09 CGAAGAACTC ATCCTTGTTAGCTCAGTTGGTAGAGCG TTCG chrIV:359381-359763 + 54 7.81e-09 CGAAGAACTC ATCCTTGTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXVI:810578-810861 + 6 8.59e-09 ATTTG CGACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIII:195942-196307 - 71 1.04e-08 ACA AGGGCGTGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXII:92419-92660 + 58 1.04e-08 CAAGTTAATA AGGGCGTGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrVIII:388711-389213 - 58 1.36e-08 AACAGATACA TGGGCGTGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXVI:572072-572504 + 30 1.49e-08 CACAATACTT CGCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXII:962892-963244 - 12 1.63e-08 GTATTATCGA CGGAGGGTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXIII:504650-505227 + 6 1.94e-08 ATAAG TGGTTGTTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrI:138945-139337 + 60 2.96e-08 TCAATTAGTA CGGGCGTGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXVI:744111-744532 + 12 4.10e-08 ACAGTGTAAA AGCCTCCTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVII:661541-661921 + 67 5.19e-08 GGTAAAAATT TGCCTCCTTAGCTTAGTGGTAGAGCGT TGCACTT chrXIII:747786-748122 - 34 1.35e-07 ACATATGACT AGCTCGCGTGGCGTAATGGCAACGCGT CTGACTTCTA chrXI:162439-162658 - 35 1.35e-07 AACAAATATT AGCTCGCGTGGCGTAATGGCAACGCGT CTGACTTCTA chrX:374213-374903 - 44 1.35e-07 AACAAATAGT AGCTCGCGTGGCGTAATGGCAACGCGT CTGACTTCTA chrXIII:808023-808525 - 68 2.97e-07 AGAAAA AGGTCCTATAGTGTAGTGGTTATCACT TTCGGTTCTG chrV:130824-131385 - 74 4.82e-07 . AGGTTTTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrVIII:134024-134611 + 53 6.07e-07 CAGTAAGTTC CGGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrVII:319208-320326 + 63 9.42e-07 TAAAGAAATT AGCCATCTTAGTATAGTGGTTAGTACA CATCGTTGTG chrXI:313267-313604 - 62 1.10e-06 CACAGTTGTT TGCCATCTTAGTATAGTGGTTAGTACA CATCGTTGTG chrX:517668-518060 - 45 1.35e-06 CATAAAAGTT AAGCGCCGTGGCGCAGTGGAAGCGCGC AGGGCTCATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYKTGGCBYAGTKGKTARRGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:656841-657186 3e-12 17_[-2]_56 chrVII:774148-774572 3e-12 37_[+2]_36 chrIV:1305404-1305812 3.7e-12 70_[+2]_3 chrV:550899-551852 5.4e-12 7_[-2]_66 chrXIII:259045-259410 6.5e-12 36_[-2]_37 chrXII:167787-168223 6.5e-12 44_[-2]_29 chrVIII:132859-133396 6.5e-12 4_[-2]_69 chrV:86426-86782 6.5e-12 48_[+2]_25 chrXIV:602096-602552 9.4e-12 36_[+2]_37 chrXII:734637-734923 9.4e-12 70_[+2]_3 chrIX:183316-183672 9.4e-12 43_[-2]_30 chrXIII:320845-321630 1.6e-11 6_[-2]_67 chrV:287946-289024 2.2e-11 63_[-2]_10 chrIII:227650-228203 3.6e-11 64_[+2]_9 chrX:414664-415224 1.6e-10 70_[+2]_3 chrVII:121948-122686 1.6e-10 [+2]_73 chrIV:1351870-1353150 1.6e-10 52_[-2]_21 chrIV:1201550-1201932 1.6e-10 57_[+2]_16 chrIII:151134-151561 1.6e-10 33_[-2]_40 chrXIV:104611-105066 2.1e-10 15_[+2]_58 chrVI:226500-226923 2.4e-10 73_[-2] chrXV:353957-354294 3.1e-10 12_[-2]_61 chrIV:1150697-1151114 3.1e-10 60_[-2]_13 chrXI:379504-379922 5.2e-10 15_[+2]_58 chrX:378202-378569 5.2e-10 23_[+2]_50 chrXI:307970-308407 7.4e-10 53_[-2]_20 chrVII:823351-823687 7.4e-10 11_[+2]_62 chrXIV:374685-375089 1.5e-09 30_[+2]_43 chrVII:730970-731372 2.6e-09 14_[+2]_59 chrIV:1175576-1176094 3.2e-09 42_[+2]_31 chrVIII:237755-238075 3.5e-09 48_[-2]_25 chrVI:137326-137719 3.5e-09 61_[-2]_12 chrIII:127551-127858 3.5e-09 60_[+2]_13 chrII:36244-36543 3.5e-09 53_[+2]_20 chrX:422727-423237 4.3e-09 3_[+2]_70 chrX:390916-391303 4.3e-09 30_[-2]_43 chrXVI:860125-860612 4.8e-09 59_[+2]_14 chrXV:226463-226853 4.8e-09 47_[-2]_26 chrX:531529-532206 4.8e-09 9_[+2]_64 chrVII:440641-440918 4.8e-09 52_[-2]_21 chrVI:162081-162370 4.8e-09 51_[+2]_22 chrXI:84069-84421 7.1e-09 11_[+2]_62 chrX:424352-424708 7.1e-09 9_[-2]_64 chrVII:115216-115718 7.8e-09 69_[+2]_4 chrIV:359381-359763 7.8e-09 53_[+2]_20 chrXVI:810578-810861 8.6e-09 5_[+2]_68 chrXIII:195942-196307 1e-08 70_[-2]_3 chrXII:92419-92660 1e-08 57_[+2]_16 chrVIII:388711-389213 1.4e-08 57_[-2]_16 chrXVI:572072-572504 1.5e-08 29_[+2]_44 chrXII:962892-963244 1.6e-08 11_[-2]_62 chrXIII:504650-505227 1.9e-08 5_[+2]_68 chrI:138945-139337 3e-08 59_[+2]_14 chrXVI:744111-744532 4.1e-08 11_[+2]_62 chrVII:661541-661921 5.2e-08 66_[+2]_7 chrXIII:747786-748122 1.3e-07 33_[-2]_40 chrXI:162439-162658 1.3e-07 34_[-2]_39 chrX:374213-374903 1.3e-07 43_[-2]_30 chrXIII:808023-808525 3e-07 67_[-2]_6 chrV:130824-131385 4.8e-07 73_[-2] chrVIII:134024-134611 6.1e-07 52_[+2]_21 chrVII:319208-320326 9.4e-07 62_[+2]_11 chrXI:313267-313604 1.1e-06 61_[-2]_12 chrX:517668-518060 1.4e-06 44_[-2]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYKTGGCBYAGTKGKTARRGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGSBYNYKTGGCBYAGTKGKTARRGSS width=27 seqs=64 chrXII:656841-657186 ( 18) TGGGCGTGTGGCGTAGTCGGTAGCGCG 1 chrVII:774148-774572 ( 38) TGGGCGTGTGGCGTAGTCGGTAGCGCG 1 chrIV:1305404-1305812 ( 71) AGGCAACTTGGCCGAGTGGTTAAGGCG 1 chrV:550899-551852 ( 8) AGGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXIII:259045-259410 ( 37) TGGCAACTTGGCCGAGTGGTTAAGGCG 1 chrXII:167787-168223 ( 45) TGGCAACTTGGCCGAGTGGTTAAGGCG 1 chrVIII:132859-133396 ( 5) TGGCAACTTGGCCGAGTGGTTAAGGCG 1 chrV:86426-86782 ( 49) TGGCAACTTGGCCGAGTGGTTAAGGCG 1 chrXIV:602096-602552 ( 37) TGGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXII:734637-734923 ( 71) TGGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrIX:183316-183672 ( 44) TGGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXIII:320845-321630 ( 7) CGGGCGTGTGGCGTAGTCGGTAGCGCG 1 chrV:287946-289024 ( 64) AGGCACTATGGCCGAGTGGTTAAGGCG 1 chrIII:227650-228203 ( 65) TGGCACTATGGCCGAGTGGTTAAGGCG 1 chrX:414664-415224 ( 71) AGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrVII:121948-122686 ( 1) AGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrIV:1351870-1353150 ( 53) AGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrIV:1201550-1201932 ( 58) AGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrIII:151134-151561 ( 34) AGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrXIV:104611-105066 ( 16) AGCTTCTATGGCCAAGTTGGTAAGGCG 1 chrVI:226500-226923 ( 74) TGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrXV:353957-354294 ( 13) TGCTTCTATGGCCAAGTTGGTAAGGCG 1 chrIV:1150697-1151114 ( 61) AGTCCCAGTGGCCGAGTGGTTAAGGCG 1 chrXI:379504-379922 ( 16) AGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrX:378202-378569 ( 24) AGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXI:307970-308407 ( 54) TGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrVII:823351-823687 ( 12) TGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXIV:374685-375089 ( 31) AGCGGACTTAGCTCAGTTGGGAGAGCG 1 chrVII:730970-731372 ( 15) AGACTCCATGGCCAAGTTGGTTAAGGC 1 chrIV:1175576-1176094 ( 43) AGCTTCAGTAGCTCAGTAGGAAGAGCG 1 chrVIII:237755-238075 ( 49) AGCGGATTTAGCTCAGTTGGGAGAGCG 1 chrVI:137326-137719 ( 62) TGACTCCATGGCCAAGTTGGTTAAGGC 1 chrIII:127551-127858 ( 61) TGACTCCATGGCCAAGTTGGTTAAGGC 1 chrII:36244-36543 ( 54) AGCGGATTTAGCTCAGTTGGGAGAGCG 1 chrX:422727-423237 ( 4) TGCTTCAGTAGCTCAGTAGGAAGAGCG 1 chrX:390916-391303 ( 31) TGCTTCAGTAGCTCAGTAGGAAGAGCG 1 chrXVI:860125-860612 ( 60) AGCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXV:226463-226853 ( 48) AGCGCAAGTGGTTTAGTGGTAAAATCC 1 chrX:531529-532206 ( 10) AGCGCAAGTGGTTTAGTGGTAAAATCC 1 chrVII:440641-440918 ( 53) TGCGGATTTAGCTCAGTTGGGAGAGCG 1 chrVI:162081-162370 ( 52) AGCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXI:84069-84421 ( 12) TGGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrX:424352-424708 ( 10) TGGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrVII:115216-115718 ( 70) ATCCTTGTTAGCTCAGTTGGTAGAGCG 1 chrIV:359381-359763 ( 54) ATCCTTGTTAGCTCAGTTGGTAGAGCG 1 chrXVI:810578-810861 ( 6) CGACTCCATGGCCAAGTTGGTTAAGGC 1 chrXIII:195942-196307 ( 71) AGGGCGTGTGGTCTAGTGGTATGATTC 1 chrXII:92419-92660 ( 58) AGGGCGTGTGGTCTAGTGGTATGATTC 1 chrVIII:388711-389213 ( 58) TGGGCGTGTGGTCTAGTGGTATGATTC 1 chrXVI:572072-572504 ( 30) CGCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXII:962892-963244 ( 12) CGGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrXIII:504650-505227 ( 6) TGGTTGTTTGGCCGAGCGGTCTAAGGC 1 chrI:138945-139337 ( 60) CGGGCGTGTGGTCTAGTGGTATGATTC 1 chrXVI:744111-744532 ( 12) AGCCTCCTTAGCTTAGTGGTAGAGCGT 1 chrVII:661541-661921 ( 67) TGCCTCCTTAGCTTAGTGGTAGAGCGT 1 chrXIII:747786-748122 ( 34) AGCTCGCGTGGCGTAATGGCAACGCGT 1 chrXI:162439-162658 ( 35) AGCTCGCGTGGCGTAATGGCAACGCGT 1 chrX:374213-374903 ( 44) AGCTCGCGTGGCGTAATGGCAACGCGT 1 chrXIII:808023-808525 ( 68) AGGTCCTATAGTGTAGTGGTTATCACT 1 chrV:130824-131385 ( 74) AGGTTTTATAGTGTAGTGGTTATCACT 1 chrVIII:134024-134611 ( 53) CGGTCCTATAGTGTAGTGGTTATCACT 1 chrVII:319208-320326 ( 63) AGCCATCTTAGTATAGTGGTTAGTACA 1 chrXI:313267-313604 ( 62) TGCCATCTTAGTATAGTGGTTAGTACA 1 chrX:517668-518060 ( 45) AAGCGCCGTGGCGCAGTGGAAGCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYKTGGCBYAGTKGKTARRGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 30488 bayes= 8.0425 E= 1.3e-206 72 -99 -1264 31 -432 -1264 236 -333 -233 129 133 -432 -274 107 43 -1 -116 89 -57 31 -52 51 23 -8 -116 113 -11 -16 -87 -1264 101 53 -1264 -1264 -1264 167 -33 -1264 201 -1264 -1264 -1264 243 -1264 -1264 195 -1264 -16 -333 133 43 -33 -174 75 1 37 167 -1264 -1264 -1264 -116 -1264 221 -1264 -1264 -357 -1264 165 -274 13 143 -33 -1264 -1264 243 -1264 -432 -199 143 48 -16 -157 -157 92 103 -1264 -199 -1 72 -157 101 -274 58 1 43 -174 -201 -99 189 -116 -1264 168 89 -233 -333 113 123 -133 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYKTGGCBYAGTKGKTARRGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 64 E= 1.3e-206 0.515625 0.093750 0.000000 0.390625 0.015625 0.000000 0.953125 0.031250 0.062500 0.453125 0.468750 0.015625 0.046875 0.390625 0.250000 0.312500 0.140625 0.343750 0.125000 0.390625 0.218750 0.265625 0.218750 0.296875 0.140625 0.406250 0.171875 0.281250 0.171875 0.000000 0.375000 0.453125 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.718750 0.000000 0.281250 0.031250 0.468750 0.250000 0.250000 0.093750 0.312500 0.187500 0.406250 1.000000 0.000000 0.000000 0.000000 0.140625 0.000000 0.859375 0.000000 0.000000 0.015625 0.000000 0.984375 0.046875 0.203125 0.500000 0.250000 0.000000 0.000000 1.000000 0.000000 0.015625 0.046875 0.500000 0.437500 0.281250 0.062500 0.062500 0.593750 0.640625 0.000000 0.046875 0.312500 0.515625 0.062500 0.375000 0.046875 0.468750 0.187500 0.250000 0.093750 0.078125 0.093750 0.687500 0.140625 0.000000 0.593750 0.343750 0.062500 0.031250 0.406250 0.437500 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSBYNYKTGGCBYAGTKGKTARRGSS MEME-2 regular expression -------------------------------------------------------------------------------- [AT]G[GC][CTG][TC][TCAG][CT][TG]T[GA]G[CT][CGT][TC]AGT[GTC]G[GT][TA][AT][AG][AG]G[CG][GC] -------------------------------------------------------------------------------- Time 305.92 secs. ******************************************************************************** ******************************************************************************** MOTIF WRCAYCCATACATY MEME-3 width = 14 sites = 64 llr = 708 E-value = 8.5e-053 ******************************************************************************** -------------------------------------------------------------------------------- Motif WRCAYCCATACATY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 352a:::6:7:9:2 pos.-specific C 218:799:2:a135 probability G :3:::::3:3:::: matrix T 51::31:28:::73 bits 2.4 * 2.2 * 1.9 ** * 1.7 ** * Relative 1.5 ** ** * Entropy 1.2 ***** ** (16.0 bits) 1.0 ***** ***** 0.7 ***** ***** 0.5 ************ 0.2 ************** 0.0 -------------- Multilevel TACACCCATACATC consensus AGA T G G CT sequence C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAYCCATACATY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chrVIII:382949-383309 - 22 6.23e-09 GAACATCCGA TACACCCATACATC ATGAAAATAA chrX:703284-703610 - 54 4.49e-08 GACGCGTGGA AGCACCCATGCATC CACTATTTAT chrIV:1355750-1355959 - 35 6.93e-08 CGGTTAAAAT TACACCCATACATT TATAGTATTT chrII:592929-593261 - 40 8.92e-08 CCTCTTTTCT TGCATCCATACATC TTTGAACTCC chrII:415514-415921 - 16 1.15e-07 TTTCCTTTTT TACACCCATGCATT TTGTCATCCA chrVII:555134-555905 + 40 1.75e-07 ACATCCCTTT TACACCCGTGCATT AAAAGTGTTT chrVI:95512-95793 - 34 1.75e-07 CAATCAGTCA TGCACCCACACACC GGATTGCGTA chrII:181356-181591 + 71 2.12e-07 CCCTTTACAA AGCACCCATACATT ACATTGAATA chrII:89679-89966 - 29 2.55e-07 TTTGTGACTT TACATCCATACACC CTCTTTAACA chrVIII:125936-126294 + 36 3.05e-07 AAGACGTTAA TGCATCCGTACACC TACATCTTTA chrXIV:783907-784312 - 1 3.62e-07 CCCACACACC CACACCCACACACC chrXI:666624-666775 - 32 3.62e-07 ACCCACACAC CACACCCACACACC CACACCACAC chrVI:4589-4754 + 83 3.62e-07 CCACACACAC CACACCCACACACC CACA chrIII:163501-163829 - 32 4.14e-07 GTTAAATTAC CGCACCCACGCACC CAACCGCGGC chrII:477101-477423 + 21 4.14e-07 ACATTCATGT TGCACCCACACATT TATACACCCA chrX:607889-608130 + 36 4.91e-07 ATGCCAACCC TCCATCCATACATC CTTTTTAACC chrI:81903-82249 - 84 4.91e-07 TGG TACATCCGTGCACC TCCGCTAGAT chrXV:79743-80102 - 76 6.48e-07 ACTCCATGTA AACACCCGTACATA TTAAATAAGT chrIX:254247-254517 - 26 6.48e-07 GGCGAGCTTC CGCACCCACACATT CTAATTGCCG chrXIV:330845-331089 + 32 7.36e-07 TCAGAGATCT TACATCCTTACATC TAAAGTAAAA chrVIII:149028-149199 - 19 7.36e-07 CCCATACATT TTCACCCATGCACC ATTGAATTAT chrXVI:731953-732300 + 27 9.51e-07 GCATCGTCAG TACACCCATACCTT TAGGATGGTT chrXII:932117-932542 - 21 9.51e-07 TCTGTTTCTC TACATCCGTGCATT ATTACATAGT chrXVI:378709-378984 - 19 1.09e-06 GAGTTCTCAT TGAACCCATACATT TCAACTATTT chrXII:241608-241963 + 71 1.23e-06 TTTCCCTTTT TACATCCGTACATA TAAAATGTAA chrVI:223924-224136 - 77 1.23e-06 TGTTTTCTTT TACATCCGTACATA CTCTTAGACC chrVI:221750-222065 - 63 1.40e-06 TAAGACTTTT TTCACCCGTACATT TTTAACACCC chrV:85196-85401 + 51 1.40e-06 AGTGATATCA TCCACCCATACCCC TCGATGTATT chrXII:1028229-1028523 + 71 1.57e-06 AAGACAAAAT ATCACCCATGCACC AAAATGTATG chrX:72869-74348 + 23 1.57e-06 CACATCATTT TACATCCTTGCACC ACACTGAAAA chrXIII:551410-551775 + 76 1.76e-06 AGTACATATT GGCACCCATACATT ATAAAATCAT chrV:140482-140859 - 55 1.76e-06 GGACGCACAA AGCACCCATACCTT TTACAATGCC chrIX:316112-316555 + 68 2.22e-06 TTTTCAGACT AGAACCCATACATT ATTTTACAAA chrIV:1401290-1401565 + 55 2.22e-06 CCAATCATTT TCCACCCACACATA TATTACCCTT chrXII:732008-732285 - 65 2.48e-06 CTAAGGGATT CGAACCCTTGCATC CGAAGATATC chrXII:592386-592713 + 36 2.48e-06 CTAAGGGATT CGAACCCTTGCATC CGAAGATATC chrXVI:302718-302928 + 55 2.75e-06 AGCTAACTTG TACATCCAGACATC CTAAAACACC chrVII:788347-788732 - 40 3.05e-06 TATTCCTTAC AACATCCGTGCATA CTCTAAACCC chrVII:438599-438859 - 79 3.05e-06 AAGACCTT ACCATCCATACATT TTGGAACTTT chrIV:1300974-1301313 + 15 3.05e-06 TTTTCCTTCA AACATCCGTGCACT GTGGATGTTT chrIV:411333-411594 + 21 3.36e-06 AAACAAATCA AACACCCACACCCC GGGCACCCAA chrXV:505140-505482 + 32 4.07e-06 TCATTCATTT CAAACCCATACACA ATGAACCTTA chrV:423103-423455 + 42 5.35e-06 GCTGCATATT TACCTCCGTACACC TTCTACACCC chrIV:321678-321933 + 43 5.35e-06 TTCATACCTT TACCTCCGTACACC AATCTTTATT chrXVI:699889-700350 + 64 5.85e-06 TCGAGGACCG CGAATCCTTACATC ACACCCAATC chrXV:216298-216624 + 47 7.01e-06 GGAACATCCG AGCACCCGCGCCTT CCTCAACCCA chrVIII:296952-297230 + 15 7.01e-06 CACAATTTCG TCCACCAGTACATC ACAGCATGCT chrIV:117153-117526 + 80 9.11e-06 GTATTAATCT CAGACCCATACATA TCTACAC chrXVI:520170-520486 + 85 9.88e-06 GCCTGAGTGT TCCACCCAGGCCTC GC chrXII:426921-428120 - 40 1.07e-05 TAAATAGTGG AACACCAATACATT TAGAATAATA chrXII:48732-49082 - 46 1.16e-05 CATCCCAATG AAGATCCGTACATC TTAGACACCC chrX:90047-90403 + 85 1.46e-05 CCTGAACATT CTCACCCATACATG GC chrV:354810-355310 - 19 1.57e-05 AGGTGGCTCC TAACCCCATACATA CACTGTATGA chrV:469079-469608 - 43 1.69e-05 CAATTATCAC AAAACTCATACATC TCTTAAGATT chrIV:519651-521106 + 39 2.26e-05 TATTACATTA TCAATCCTTGCATT TCAGCTTCCT chrIV:434130-435114 + 46 2.26e-05 TATTACATTA TCAATCCTTGCATT TCAGCTTCCA chrII:167917-168164 + 44 2.26e-05 ACAGTGTTTT AAAACCCAGACATA TTTTTCACCA chrVIII:175104-175731 + 53 2.97e-05 CATACACATA CACATTCGTGCATA CATTCATTTA chrVII:857128-857652 + 54 3.18e-05 CTAAGAGATT CGAACTCTTGCATC TTACGATACC chrIII:90786-91098 - 51 3.18e-05 CTAAGAGATT CGAACTCTTGCATC TTACGATACC chrVIII:134024-134611 - 2 4.93e-05 GATCGAATAC GTCATCCTTGCATT A chrIV:555826-556425 + 11 5.55e-05 CTTCCAAAGT TTCACCGATACACA AGATGACACC chrVIII:103667-104364 + 21 5.89e-05 CAACTTATAT AGCACCTTTACATA TCTTTAATTT chrVI:166841-167669 + 18 7.00e-05 GTTGTTTTTC TGCACCAGCACCCA CTTTGGAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAYCCATACATY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVIII:382949-383309 6.2e-09 21_[-3]_65 chrX:703284-703610 4.5e-08 53_[-3]_33 chrIV:1355750-1355959 6.9e-08 34_[-3]_52 chrII:592929-593261 8.9e-08 39_[-3]_47 chrII:415514-415921 1.1e-07 15_[-3]_71 chrVII:555134-555905 1.8e-07 39_[+3]_47 chrVI:95512-95793 1.8e-07 33_[-3]_53 chrII:181356-181591 2.1e-07 70_[+3]_16 chrII:89679-89966 2.5e-07 28_[-3]_58 chrVIII:125936-126294 3e-07 35_[+3]_51 chrXIV:783907-784312 3.6e-07 [-3]_86 chrXI:666624-666775 3.6e-07 31_[-3]_55 chrVI:4589-4754 3.6e-07 82_[+3]_4 chrIII:163501-163829 4.1e-07 31_[-3]_55 chrII:477101-477423 4.1e-07 20_[+3]_66 chrX:607889-608130 4.9e-07 35_[+3]_51 chrI:81903-82249 4.9e-07 83_[-3]_3 chrXV:79743-80102 6.5e-07 75_[-3]_11 chrIX:254247-254517 6.5e-07 25_[-3]_61 chrXIV:330845-331089 7.4e-07 31_[+3]_55 chrVIII:149028-149199 7.4e-07 18_[-3]_68 chrXVI:731953-732300 9.5e-07 26_[+3]_60 chrXII:932117-932542 9.5e-07 20_[-3]_66 chrXVI:378709-378984 1.1e-06 18_[-3]_68 chrXII:241608-241963 1.2e-06 70_[+3]_16 chrVI:223924-224136 1.2e-06 76_[-3]_10 chrVI:221750-222065 1.4e-06 62_[-3]_24 chrV:85196-85401 1.4e-06 50_[+3]_36 chrXII:1028229-1028523 1.6e-06 70_[+3]_16 chrX:72869-74348 1.6e-06 22_[+3]_64 chrXIII:551410-551775 1.8e-06 75_[+3]_11 chrV:140482-140859 1.8e-06 54_[-3]_32 chrIX:316112-316555 2.2e-06 67_[+3]_19 chrIV:1401290-1401565 2.2e-06 54_[+3]_32 chrXII:732008-732285 2.5e-06 64_[-3]_22 chrXII:592386-592713 2.5e-06 35_[+3]_51 chrXVI:302718-302928 2.8e-06 54_[+3]_32 chrVII:788347-788732 3.1e-06 39_[-3]_47 chrVII:438599-438859 3.1e-06 78_[-3]_8 chrIV:1300974-1301313 3.1e-06 14_[+3]_72 chrIV:411333-411594 3.4e-06 20_[+3]_66 chrXV:505140-505482 4.1e-06 31_[+3]_55 chrV:423103-423455 5.4e-06 41_[+3]_45 chrIV:321678-321933 5.4e-06 42_[+3]_44 chrXVI:699889-700350 5.9e-06 63_[+3]_23 chrXV:216298-216624 7e-06 46_[+3]_40 chrVIII:296952-297230 7e-06 14_[+3]_72 chrIV:117153-117526 9.1e-06 79_[+3]_7 chrXVI:520170-520486 9.9e-06 84_[+3]_2 chrXII:426921-428120 1.1e-05 39_[-3]_47 chrXII:48732-49082 1.2e-05 45_[-3]_41 chrX:90047-90403 1.5e-05 84_[+3]_2 chrV:354810-355310 1.6e-05 18_[-3]_68 chrV:469079-469608 1.7e-05 42_[-3]_44 chrIV:519651-521106 2.3e-05 38_[+3]_48 chrIV:434130-435114 2.3e-05 45_[+3]_41 chrII:167917-168164 2.3e-05 43_[+3]_43 chrVIII:175104-175731 3e-05 52_[+3]_34 chrVII:857128-857652 3.2e-05 53_[+3]_33 chrIII:90786-91098 3.2e-05 50_[-3]_36 chrVIII:134024-134611 4.9e-05 1_[-3]_85 chrIV:555826-556425 5.6e-05 10_[+3]_76 chrVIII:103667-104364 5.9e-05 20_[+3]_66 chrVI:166841-167669 7e-05 17_[+3]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAYCCATACATY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WRCAYCCATACATY width=14 seqs=64 chrVIII:382949-383309 ( 22) TACACCCATACATC 1 chrX:703284-703610 ( 54) AGCACCCATGCATC 1 chrIV:1355750-1355959 ( 35) TACACCCATACATT 1 chrII:592929-593261 ( 40) TGCATCCATACATC 1 chrII:415514-415921 ( 16) TACACCCATGCATT 1 chrVII:555134-555905 ( 40) TACACCCGTGCATT 1 chrVI:95512-95793 ( 34) TGCACCCACACACC 1 chrII:181356-181591 ( 71) AGCACCCATACATT 1 chrII:89679-89966 ( 29) TACATCCATACACC 1 chrVIII:125936-126294 ( 36) TGCATCCGTACACC 1 chrXIV:783907-784312 ( 1) CACACCCACACACC 1 chrXI:666624-666775 ( 32) CACACCCACACACC 1 chrVI:4589-4754 ( 83) CACACCCACACACC 1 chrIII:163501-163829 ( 32) CGCACCCACGCACC 1 chrII:477101-477423 ( 21) TGCACCCACACATT 1 chrX:607889-608130 ( 36) TCCATCCATACATC 1 chrI:81903-82249 ( 84) TACATCCGTGCACC 1 chrXV:79743-80102 ( 76) AACACCCGTACATA 1 chrIX:254247-254517 ( 26) CGCACCCACACATT 1 chrXIV:330845-331089 ( 32) TACATCCTTACATC 1 chrVIII:149028-149199 ( 19) TTCACCCATGCACC 1 chrXVI:731953-732300 ( 27) TACACCCATACCTT 1 chrXII:932117-932542 ( 21) TACATCCGTGCATT 1 chrXVI:378709-378984 ( 19) TGAACCCATACATT 1 chrXII:241608-241963 ( 71) TACATCCGTACATA 1 chrVI:223924-224136 ( 77) TACATCCGTACATA 1 chrVI:221750-222065 ( 63) TTCACCCGTACATT 1 chrV:85196-85401 ( 51) TCCACCCATACCCC 1 chrXII:1028229-1028523 ( 71) ATCACCCATGCACC 1 chrX:72869-74348 ( 23) TACATCCTTGCACC 1 chrXIII:551410-551775 ( 76) GGCACCCATACATT 1 chrV:140482-140859 ( 55) AGCACCCATACCTT 1 chrIX:316112-316555 ( 68) AGAACCCATACATT 1 chrIV:1401290-1401565 ( 55) TCCACCCACACATA 1 chrXII:732008-732285 ( 65) CGAACCCTTGCATC 1 chrXII:592386-592713 ( 36) CGAACCCTTGCATC 1 chrXVI:302718-302928 ( 55) TACATCCAGACATC 1 chrVII:788347-788732 ( 40) AACATCCGTGCATA 1 chrVII:438599-438859 ( 79) ACCATCCATACATT 1 chrIV:1300974-1301313 ( 15) AACATCCGTGCACT 1 chrIV:411333-411594 ( 21) AACACCCACACCCC 1 chrXV:505140-505482 ( 32) CAAACCCATACACA 1 chrV:423103-423455 ( 42) TACCTCCGTACACC 1 chrIV:321678-321933 ( 43) TACCTCCGTACACC 1 chrXVI:699889-700350 ( 64) CGAATCCTTACATC 1 chrXV:216298-216624 ( 47) AGCACCCGCGCCTT 1 chrVIII:296952-297230 ( 15) TCCACCAGTACATC 1 chrIV:117153-117526 ( 80) CAGACCCATACATA 1 chrXVI:520170-520486 ( 85) TCCACCCAGGCCTC 1 chrXII:426921-428120 ( 40) AACACCAATACATT 1 chrXII:48732-49082 ( 46) AAGATCCGTACATC 1 chrX:90047-90403 ( 85) CTCACCCATACATG 1 chrV:354810-355310 ( 19) TAACCCCATACATA 1 chrV:469079-469608 ( 43) AAAACTCATACATC 1 chrIV:519651-521106 ( 39) TCAATCCTTGCATT 1 chrIV:434130-435114 ( 46) TCAATCCTTGCATT 1 chrII:167917-168164 ( 44) AAAACCCAGACATA 1 chrVIII:175104-175731 ( 53) CACATTCGTGCATA 1 chrVII:857128-857652 ( 54) CGAACTCTTGCATC 1 chrIII:90786-91098 ( 51) CGAACTCTTGCATC 1 chrVIII:134024-134611 ( 2) GTCATCCTTGCATT 1 chrIV:555826-556425 ( 11) TTCACCGATACACA 1 chrVIII:103667-104364 ( 21) AGCACCTTTACATA 1 chrVI:166841-167669 ( 18) TGCACCAGCACCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAYCCATACATY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 35844 bayes= 9.86486 E= 8.5e-053 -33 23 -257 67 58 -57 75 -174 -63 204 -257 -1264 160 -199 -1264 -1264 -1264 182 -1264 13 -1264 233 -1264 -233 -274 231 -357 -432 84 -1264 51 -87 -1264 -11 -199 131 110 -1264 82 -1264 -1264 243 -1264 -1264 150 -77 -1264 -1264 -1264 68 -1264 116 -63 133 -357 -1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAYCCATACATY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 64 E= 8.5e-053 0.250000 0.218750 0.031250 0.500000 0.468750 0.125000 0.312500 0.093750 0.203125 0.765625 0.031250 0.000000 0.953125 0.046875 0.000000 0.000000 0.000000 0.656250 0.000000 0.343750 0.000000 0.937500 0.000000 0.062500 0.046875 0.921875 0.015625 0.015625 0.562500 0.000000 0.265625 0.171875 0.000000 0.171875 0.046875 0.781250 0.671875 0.000000 0.328125 0.000000 0.000000 1.000000 0.000000 0.000000 0.890625 0.109375 0.000000 0.000000 0.000000 0.296875 0.000000 0.703125 0.203125 0.468750 0.015625 0.312500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAYCCATACATY MEME-3 regular expression -------------------------------------------------------------------------------- [TAC][AG][CA]A[CT]CC[AG]T[AG]CA[TC][CTA] -------------------------------------------------------------------------------- Time 448.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:81903-82249 9.43e-04 83_[-3(4.91e-07)]_3 chrI:138945-139337 4.49e-05 59_[+2(2.96e-08)]_14 chrI:166170-166608 6.37e-01 100 chrII:6815-7087 4.75e-01 100 chrII:9464-9915 3.74e-01 100 chrII:36244-36543 1.88e-05 53_[+2(3.53e-09)]_20 chrII:44778-45330 8.70e-01 100 chrII:60889-62096 4.30e-01 100 chrII:89679-89966 1.16e-03 8_[-3(1.98e-06)]_6_[-3(2.55e-07)]_\ 58 chrII:167917-168164 6.49e-03 43_[+3(2.26e-05)]_3_[+3(3.86e-05)]_\ 26 chrII:181356-181591 1.03e-03 70_[+3(2.12e-07)]_16 chrII:197289-197830 5.14e-08 27_[+1(1.44e-11)]_44 chrII:226971-227349 9.67e-02 100 chrII:266229-267008 8.95e-01 100 chrII:326503-327026 2.10e-01 100 chrII:331763-332968 9.99e-01 100 chrII:347445-348388 7.65e-02 100 chrII:350564-350967 6.24e-01 100 chrII:405672-406220 4.03e-09 22_[+1(9.04e-11)]_11_[+2(1.07e-05)]_\ 11 chrII:415514-415921 7.77e-05 15_[-3(1.15e-07)]_71 chrII:477101-477423 1.38e-03 1_[+3(8.34e-06)]_5_[+3(4.14e-07)]_\ 66 chrII:592929-593261 8.67e-05 22_[-3(5.55e-05)]_3_[-3(8.92e-08)]_\ 47 chrII:604134-606066 9.98e-01 100 chrII:644961-645416 1.03e-08 27_[+2(8.60e-05)]_15_[+1(3.50e-11)]_\ 2 chrIII:131-1260 4.91e-01 100 chrIII:90786-91098 1.50e-02 50_[-3(3.18e-05)]_36 chrIII:123360-123806 1.04e-09 45_[-1(2.60e-13)]_26 chrIII:127551-127858 1.75e-05 60_[+2(3.53e-09)]_13 chrIII:142254-142974 9.03e-01 100 chrIII:149752-150161 7.85e-07 12_[+2(4.49e-05)]_15_[+1(4.93e-09)]_\ 17 chrIII:151134-151561 1.86e-06 33_[-2(1.58e-10)]_40 chrIII:163501-163829 1.87e-03 31_[-3(4.14e-07)]_55 chrIII:168072-168529 2.75e-07 52_[-1(2.73e-11)]_19 chrIII:178329-178771 9.78e-01 100 chrIII:227650-228203 6.28e-08 64_[+2(3.60e-11)]_9 chrIII:295345-295919 7.34e-01 100 chrIII:308592-308965 1.34e-01 100 chrIV:83277-83928 7.17e-08 35_[+1(1.11e-11)]_36 chrIV:117153-117526 2.62e-02 79_[+3(9.11e-06)]_7 chrIV:130129-130990 9.34e-01 100 chrIV:221655-222339 8.55e-01 100 chrIV:229559-230404 4.93e-01 100 chrIV:308043-309560 1.87e-01 100 chrIV:321678-321933 2.55e-02 42_[+3(5.35e-06)]_12_[+3(9.88e-06)]_\ 18 chrIV:340452-343137 7.04e-01 100 chrIV:358017-358582 5.25e-01 100 chrIV:359381-359763 4.51e-05 53_[+2(7.81e-09)]_20 chrIV:410002-410449 3.01e-01 100 chrIV:411333-411594 1.07e-03 20_[+3(3.36e-06)]_66 chrIV:434130-435114 2.10e-03 45_[+3(2.26e-05)]_41 chrIV:437574-438487 9.11e-01 100 chrIV:488423-488973 4.51e-01 100 chrIV:490972-491231 5.81e-02 100 chrIV:519651-521106 2.10e-03 38_[+3(2.26e-05)]_48 chrIV:555826-556425 6.10e-03 10_[+3(5.55e-05)]_76 chrIV:568499-569198 9.96e-01 100 chrIV:578801-580411 6.25e-01 100 chrIV:619751-620160 3.28e-05 65_[-1(3.23e-09)]_6 chrIV:667499-668552 5.14e-08 33_[-1(1.44e-11)]_38 chrIV:802614-802839 2.48e-07 56_[-1(2.73e-11)]_15 chrIV:884294-884742 7.39e-01 100 chrIV:945788-946618 3.15e-01 100 chrIV:992683-993212 8.14e-01 100 chrIV:1016956-1017484 1.22e-07 38_[-1(8.46e-12)]_33 chrIV:1075354-1075893 7.36e-01 100 chrIV:1087550-1088104 7.39e-01 100 chrIV:1095008-1095733 4.31e-05 51_[-1(2.28e-08)]_20 chrIV:1135641-1138765 2.44e-01 100 chrIV:1150697-1151114 2.06e-07 60_[-2(3.10e-10)]_13 chrIV:1175576-1176094 2.87e-06 42_[+2(3.18e-09)]_31 chrIV:1201550-1201932 3.64e-06 57_[+2(1.58e-10)]_16 chrIV:1300974-1301313 1.60e-02 14_[+3(3.05e-06)]_72 chrIV:1305404-1305812 1.64e-08 70_[+2(3.67e-12)]_3 chrIV:1351870-1353150 6.81e-15 7_[-1(5.61e-12)]_16_[-2(1.58e-10)]_\ 21 chrIV:1355750-1355959 3.32e-04 34_[-3(6.93e-08)]_10_[-3(1.23e-06)]_\ 28 chrIV:1359441-1360805 4.87e-01 100 chrIV:1401290-1401565 5.75e-03 54_[+3(2.22e-06)]_32 chrIV:1450776-1451213 1.25e-01 100 chrIV:1460994-1461848 7.89e-01 100 chrIX:67562-68490 6.34e-01 100 chrIX:99688-100139 6.37e-01 100 chrIX:174967-175193 3.43e-06 42_[+1(7.49e-10)]_29 chrIX:183316-183672 1.80e-07 43_[-2(9.36e-12)]_30 chrIX:197069-198148 6.90e-02 32_[+2(5.66e-05)]_41 chrIX:210667-210904 4.08e-01 100 chrIX:248663-248940 1.53e-01 100 chrIX:254247-254517 3.20e-03 25_[-3(6.48e-07)]_61 chrIX:257382-257826 8.34e-01 100 chrIX:299848-300461 3.10e-01 100 chrIX:316112-316555 9.72e-03 67_[+3(2.22e-06)]_19 chrIX:324019-324526 3.25e-01 100 chrIX:325581-326111 6.75e-01 100 chrIX:336119-336640 4.29e-08 21_[-1(1.32e-09)]_15_[-2(9.54e-06)]_\ 8 chrIX:370266-370582 6.21e-02 41_[+2(8.60e-05)]_32 chrV:53550-54030 5.75e-01 100 chrV:61068-62104 1.57e-01 100 chrV:85196-85401 4.66e-03 21_[+3(1.46e-05)]_15_[+3(1.40e-06)]_\ 36 chrV:85556-86140 7.73e-01 100 chrV:86426-86782 1.69e-07 48_[+2(6.50e-12)]_25 chrV:86931-87176 2.87e-01 100 chrV:99681-100273 9.97e-01 100 chrV:117186-118285 2.56e-01 100 chrV:130824-131385 1.60e-10 29_[-1(1.13e-10)]_15_[-2(4.82e-07)] chrV:135214-136207 6.61e-01 100 chrV:138492-139934 6.59e-01 100 chrV:140482-140859 7.04e-03 54_[-3(1.76e-06)]_16_[-3(9.17e-05)]_\ 2 chrV:176295-177361 1.54e-01 100 chrV:249689-251041 8.42e-08 11_[+1(2.73e-11)]_60 chrV:287946-289024 8.56e-09 63_[-2(2.22e-11)]_10 chrV:305824-306926 2.39e-01 100 chrV:311760-312273 1.04e-06 58_[-1(1.27e-10)]_13 chrV:354810-355310 2.16e-02 18_[-3(1.57e-05)]_68 chrV:355670-355837 3.68e-01 100 chrV:396122-396553 9.94e-01 100 chrV:423103-423455 6.88e-03 41_[+3(5.35e-06)]_45 chrV:431036-432200 9.86e-01 100 chrV:434425-435140 4.66e-02 100 chrV:435322-435936 4.04e-01 100 chrV:438262-438953 3.42e-01 100 chrV:441573-442625 1.47e-01 100 chrV:442882-443332 9.49e-01 100 chrV:469079-469608 3.26e-02 42_[-3(1.69e-05)]_44 chrV:485611-487579 7.00e-01 100 chrV:550899-551852 5.23e-08 7_[-2(5.39e-12)]_66 chrVI:4589-4754 7.65e-04 67_[+3(1.98e-06)]_1_[+3(3.62e-07)]_\ 4 chrVI:64175-65556 7.50e-01 100 chrVI:95512-95793 1.36e-05 33_[-3(1.75e-07)]_[+2(8.60e-05)]_26 chrVI:101376-101720 5.96e-01 100 chrVI:137326-137719 5.43e-11 15_[-1(3.84e-09)]_17_[-2(3.53e-09)]_\ 12 chrVI:157905-158197 4.39e-01 100 chrVI:162081-162370 3.40e-05 51_[+2(4.79e-09)]_22 chrVI:166841-167669 1.84e-02 17_[+3(7.00e-05)]_69 chrVI:180676-181967 8.63e-01 100 chrVI:191296-191744 2.57e-02 100 chrVI:210465-211048 6.47e-01 100 chrVI:221750-222065 5.68e-03 62_[-3(1.40e-06)]_24 chrVI:223924-224136 1.02e-03 76_[-3(1.23e-06)]_10 chrVI:226500-226923 1.00e-14 28_[-1(5.61e-12)]_16_[-2(2.38e-10)] chrVII:110320-110782 9.50e-01 100 chrVII:115216-115718 1.04e-04 69_[+2(7.81e-09)]_4 chrVII:121948-122686 6.81e-15 [+2(1.58e-10)]_16_[+1(5.61e-12)]_28 chrVII:148278-149615 9.40e-01 100 chrVII:185024-185793 2.90e-02 27_[-2(1.91e-05)]_46 chrVII:205126-205738 7.32e-01 100 chrVII:254148-254702 9.89e-01 100 chrVII:276722-278707 4.67e-01 100 chrVII:287021-288189 6.25e-01 100 chrVII:310483-312734 3.71e-01 100 chrVII:319208-320326 3.77e-03 62_[+2(9.42e-07)]_11 chrVII:328403-329348 6.69e-01 100 chrVII:364884-366646 7.84e-01 100 chrVII:405467-406038 3.56e-01 100 chrVII:411649-412737 9.81e-01 100 chrVII:422910-423657 9.56e-01 100 chrVII:438599-438859 3.73e-03 55_[-3(3.18e-05)]_9_[-3(3.05e-06)]_\ 8 chrVII:440641-440918 9.81e-06 52_[-2(4.79e-09)]_21 chrVII:479679-482658 6.18e-01 100 chrVII:531295-531799 4.33e-01 100 chrVII:534525-535194 1.57e-01 100 chrVII:541717-542118 6.83e-07 23_[+1(3.50e-11)]_48 chrVII:544047-544840 8.63e-01 100 chrVII:555134-555905 1.96e-04 39_[+3(1.75e-07)]_47 chrVII:648748-649332 7.86e-02 100 chrVII:661541-661921 1.67e-04 66_[+2(5.19e-08)]_7 chrVII:700455-701162 1.62e-01 100 chrVII:706934-707275 5.91e-06 55_[-1(5.35e-09)]_16 chrVII:726349-726713 8.62e-01 100 chrVII:730970-731372 4.58e-11 14_[+2(2.58e-09)]_17_[+1(3.84e-09)]_\ 13 chrVII:736203-737156 2.28e-01 100 chrVII:738860-739611 9.86e-01 100 chrVII:774148-774572 2.65e-08 37_[+2(3.01e-12)]_36 chrVII:779402-779766 8.44e-01 100 chrVII:788347-788732 1.32e-02 39_[-3(3.05e-06)]_47 chrVII:794018-794500 8.82e-01 100 chrVII:823351-823687 5.62e-13 11_[+2(7.43e-10)]_17_[+1(6.38e-11)]_\ 16 chrVII:828450-828982 1.76e-07 58_[-1(9.04e-11)]_13 chrVII:845281-846321 7.53e-01 100 chrVII:857128-857652 1.50e-02 53_[+3(3.18e-05)]_33 chrVII:876172-876727 4.06e-08 36_[+1(5.61e-12)]_35 chrVII:878578-879028 5.35e-03 36_[-2(6.21e-06)]_37 chrVII:882788-883890 1.74e-01 100 chrVII:930091-931138 3.87e-01 100 chrVII:1003942-1004403 6.77e-01 100 chrVIII:62414-62893 9.84e-01 100 chrVIII:74919-75918 9.05e-01 100 chrVIII:103667-104364 9.30e-02 20_[+3(5.89e-05)]_66 chrVIII:115800-116296 6.48e-01 100 chrVIII:125936-126294 2.07e-03 35_[+3(3.05e-07)]_[+3(6.62e-05)]_37 chrVIII:132859-133396 5.00e-08 4_[-2(6.50e-12)]_69 chrVIII:134024-134611 5.84e-06 1_[-3(4.93e-05)]_37_[+2(6.07e-07)]_\ 21 chrVIII:134849-135033 1.33e-01 100 chrVIII:145433-146768 5.96e-01 100 chrVIII:149028-149199 3.86e-04 18_[-3(7.36e-07)]_68 chrVIII:175104-175731 8.52e-02 52_[+3(2.97e-05)]_34 chrVIII:237755-238075 1.19e-05 48_[-2(3.53e-09)]_25 chrVIII:296952-297230 1.48e-02 14_[+3(7.01e-06)]_72 chrVIII:358141-358748 7.17e-01 100 chrVIII:382949-383309 6.34e-06 [-3(4.93e-05)]_7_[-3(6.23e-09)]_65 chrVIII:388711-389213 8.96e-06 57_[-2(1.36e-08)]_16 chrVIII:452049-452872 3.34e-01 100 chrVIII:475553-475898 3.50e-08 32_[-1(9.68e-12)]_39 chrVIII:505844-506521 3.81e-01 100 chrVIII:556952-557154 9.08e-01 100 chrX:59088-59503 7.57e-01 100 chrX:72869-74348 1.02e-02 22_[+3(1.57e-06)]_64 chrX:74884-75668 6.08e-01 100 chrX:75841-76511 2.32e-01 100 chrX:90047-90403 4.41e-02 84_[+3(1.46e-05)]_2 chrX:115787-116294 6.34e-01 100 chrX:157500-157868 1.56e-01 100 chrX:168308-170114 5.55e-01 100 chrX:196197-197510 8.63e-01 100 chrX:204533-204979 4.29e-08 27_[+2(9.54e-06)]_15_[+1(1.32e-09)]_\ 2 chrX:232803-234079 4.53e-01 100 chrX:348833-349440 9.53e-01 100 chrX:354160-354507 2.26e-05 18_[+1(4.54e-09)]_53 chrX:355207-355742 2.63e-03 30_[+2(1.07e-05)]_43 chrX:374213-374903 5.78e-04 43_[-2(1.35e-07)]_30 chrX:378202-378569 3.98e-13 23_[+2(5.15e-10)]_17_[+1(6.38e-11)]_\ 4 chrX:390916-391303 1.45e-05 30_[-2(4.33e-09)]_43 chrX:396166-397073 8.32e-01 100 chrX:414664-415224 3.28e-06 70_[+2(1.58e-10)]_3 chrX:415470-416503 5.35e-02 100 chrX:422727-423237 4.74e-11 3_[+2(4.33e-09)]_16_[+1(1.91e-09)]_\ 25 chrX:424352-424708 1.53e-05 9_[-2(7.10e-09)]_64 chrX:517668-518060 3.26e-08 [-1(4.93e-09)]_15_[-2(1.35e-06)]_29 chrX:523497-524439 9.51e-01 100 chrX:526242-526703 1.35e-01 100 chrX:531529-532206 4.25e-13 9_[+2(4.79e-09)]_14_[+1(1.11e-11)]_\ 21 chrX:538527-538768 9.84e-01 100 chrX:541005-542352 9.15e-01 100 chrX:542752-543552 8.56e-01 100 chrX:607889-608130 6.38e-04 35_[+3(4.91e-07)]_4_[+3(9.11e-06)]_\ 33 chrX:617710-618496 3.70e-01 100 chrX:650712-651587 6.16e-01 100 chrX:703284-703610 1.69e-04 53_[-3(4.49e-08)]_33 chrXI:777-1085 5.73e-01 100 chrXI:46724-47150 5.86e-01 100 chrXI:74415-74782 1.33e-01 100 chrXI:84069-84421 1.35e-09 11_[+2(7.10e-09)]_26_[-1(1.30e-07)]_\ 7 chrXI:108718-109043 6.00e-01 100 chrXI:140824-141491 9.80e-01 100 chrXI:157703-159372 2.15e-01 100 chrXI:159544-159733 9.88e-01 100 chrXI:162439-162658 6.36e-04 34_[-2(1.35e-07)]_39 chrXI:302712-303715 3.44e-01 100 chrXI:307970-308407 5.56e-13 7_[-1(6.38e-11)]_17_[-2(7.43e-10)]_\ 20 chrXI:313267-313604 2.96e-07 17_[-1(5.87e-08)]_15_[-2(1.10e-06)]_\ 12 chrXI:379504-379922 3.98e-13 15_[+2(5.15e-10)]_17_[+1(6.38e-11)]_\ 12 chrXI:457594-458826 8.57e-01 100 chrXI:490755-491899 6.93e-02 55_[+1(6.94e-05)]_16 chrXI:513121-513507 7.12e-06 69_[-1(1.32e-09)]_2 chrXI:517802-518055 9.52e-01 100 chrXI:578772-579399 8.47e-01 100 chrXI:618028-619385 5.65e-01 100 chrXI:666624-666775 4.59e-04 31_[-3(3.62e-07)]_14_[-3(3.62e-07)]_\ 11_[-3(1.98e-06)]_2 chrXII:48732-49082 3.64e-02 45_[-3(1.16e-05)]_41 chrXII:92419-92660 1.19e-05 57_[+2(1.04e-08)]_16 chrXII:167787-168223 1.69e-07 44_[-2(6.50e-12)]_29 chrXII:214684-215061 1.04e-06 62_[-1(1.27e-10)]_9 chrXII:231722-234075 4.43e-02 100 chrXII:241608-241963 3.24e-03 70_[+3(1.23e-06)]_16 chrXII:242265-243434 5.57e-01 100 chrXII:262851-263937 7.56e-01 100 chrXII:366038-366537 2.18e-01 100 chrXII:374216-374637 2.10e-05 20_[+1(3.23e-09)]_51 chrXII:426921-428120 1.93e-02 39_[-3(1.07e-05)]_47 chrXII:448536-448961 5.52e-01 100 chrXII:459651-460082 9.27e-01 100 chrXII:460436-460679 4.04e-01 100 chrXII:497846-500264 1.07e-01 100 chrXII:521120-521713 5.55e-01 100 chrXII:592386-592713 2.30e-03 35_[+3(2.48e-06)]_51 chrXII:605168-605960 8.27e-01 100 chrXII:628221-628943 9.85e-01 100 chrXII:636794-639944 4.45e-01 100 chrXII:656841-657186 2.40e-08 17_[-2(3.01e-12)]_56 chrXII:673513-674855 1.29e-01 100 chrXII:713136-713834 2.47e-01 100 chrXII:732008-732285 1.66e-03 64_[-3(2.48e-06)]_22 chrXII:734637-734923 1.98e-08 70_[+2(9.36e-12)]_3 chrXII:780895-781855 9.38e-01 100 chrXII:783919-784517 3.12e-01 100 chrXII:793733-795262 7.62e-02 46_[+2(6.87e-05)]_27 chrXII:796274-796813 3.90e-01 100 chrXII:797017-797349 2.96e-01 100 chrXII:818508-819116 8.97e-01 100 chrXII:875247-875682 6.22e-08 26_[+1(1.01e-10)]_45 chrXII:897732-898958 8.55e-01 100 chrXII:922128-922686 9.27e-01 100 chrXII:932117-932542 1.45e-03 20_[-3(9.51e-07)]_66 chrXII:962892-963244 1.77e-05 11_[-2(1.63e-08)]_62 chrXII:975807-976093 8.38e-01 100 chrXII:1018091-1019436 4.70e-01 100 chrXII:1028229-1028523 2.28e-03 70_[+3(1.57e-06)]_2_[-3(2.78e-05)] chrXII:1051709-1052222 3.23e-01 100 chrXIII:91640-92092 5.10e-01 100 chrXIII:131379-132191 5.65e-01 100 chrXIII:145715-146247 8.78e-01 100 chrXIII:168690-169011 6.13e-06 52_[+1(4.54e-09)]_19 chrXIII:195942-196307 3.98e-06 70_[-2(1.04e-08)]_3 chrXIII:224088-224466 5.66e-01 100 chrXIII:225095-225686 8.67e-01 100 chrXIII:259045-259410 1.69e-07 36_[-2(6.50e-12)]_37 chrXIII:290454-291288 7.22e-07 20_[+1(3.50e-11)]_51 chrXIII:296785-298867 4.34e-01 100 chrXIII:320845-321630 1.07e-07 6_[-2(1.58e-11)]_67 chrXIII:352082-352369 9.16e-01 100 chrXIII:362948-363316 6.01e-04 22_[+1(5.87e-08)]_49 chrXIII:368574-370548 2.79e-01 100 chrXIII:372229-372634 5.11e-07 65_[-1(6.38e-11)]_6 chrXIII:378906-379589 9.47e-01 100 chrXIII:420368-420770 4.80e-07 70_[-1(6.38e-11)]_1 chrXIII:463442-463830 1.29e-05 8_[+1(1.32e-09)]_63 chrXIII:480436-480833 4.13e-08 38_[-1(5.61e-12)]_33 chrXIII:504650-505227 6.43e-05 5_[+2(1.94e-08)]_68 chrXIII:551410-551775 1.05e-02 59_[+3(3.62e-05)]_2_[+3(1.76e-06)]_\ 11 chrXIII:572411-573130 9.89e-01 100 chrXIII:585887-586894 7.20e-01 100 chrXIII:731588-733428 9.68e-01 100 chrXIII:747786-748122 3.89e-04 33_[-2(1.35e-07)]_40 chrXIII:754435-755245 8.01e-01 100 chrXIII:808023-808525 2.12e-11 23_[-1(2.12e-11)]_15_[-2(2.97e-07)]_\ 6 chrXIII:837738-838429 5.71e-01 100 chrXIV:63158-64551 1.67e-02 45_[+3(9.66e-05)]_41 chrXIV:95697-96435 2.62e-01 100 chrXIV:102584-103121 6.38e-01 100 chrXIV:104611-105066 1.39e-12 15_[+2(2.08e-10)]_16_[+1(7.49e-10)]_\ 13 chrXIV:241275-241842 9.55e-02 100 chrXIV:302683-303953 6.97e-01 100 chrXIV:330845-331089 2.34e-03 31_[+3(7.36e-07)]_55 chrXIV:374685-375089 1.49e-05 30_[+2(1.49e-09)]_43 chrXIV:442860-444348 5.09e-01 100 chrXIV:444518-444826 9.49e-01 100 chrXIV:493883-495054 2.13e-01 100 chrXIV:495245-496074 2.31e-01 100 chrXIV:546485-547352 3.81e-02 100 chrXIV:560142-560788 6.89e-01 100 chrXIV:568053-568467 7.54e-01 100 chrXIV:569641-570047 5.09e-01 100 chrXIV:602096-602552 1.57e-07 36_[+2(9.36e-12)]_37 chrXIV:631505-632008 5.52e-01 100 chrXIV:632487-632897 6.71e-01 100 chrXIV:725594-726343 9.50e-01 100 chrXIV:783907-784312 4.02e-04 [-3(3.62e-07)]_[-3(3.62e-07)]_5_\ [-3(3.62e-07)]_23_[-3(3.62e-07)]_16 chrXV:79743-80102 1.28e-03 75_[-3(6.48e-07)]_11 chrXV:92772-94750 6.42e-01 100 chrXV:110948-111513 5.88e-01 100 chrXV:113102-113351 6.67e-02 100 chrXV:113498-113874 1.71e-01 100 chrXV:161137-161550 7.21e-01 100 chrXV:168004-169238 7.98e-01 100 chrXV:216298-216624 2.68e-03 46_[+3(7.01e-06)]_2_[+3(1.57e-05)]_\ 24 chrXV:226463-226853 3.29e-13 4_[-1(1.11e-11)]_14_[-2(4.79e-09)]_\ 26 chrXV:228023-228563 7.51e-01 100 chrXV:251480-252329 3.70e-01 100 chrXV:252498-252695 8.47e-01 100 chrXV:274511-274994 2.57e-02 100 chrXV:281744-282396 1.76e-01 100 chrXV:288081-288372 3.56e-02 14_[+2(4.34e-05)]_59 chrXV:300895-301863 9.42e-01 100 chrXV:339778-340572 9.60e-01 100 chrXV:353957-354294 3.57e-06 12_[-2(3.10e-10)]_61 chrXV:438490-438972 6.22e-08 26_[+1(1.01e-10)]_45 chrXV:444644-445852 3.38e-01 100 chrXV:464273-464842 4.32e-07 13_[+1(1.77e-10)]_58 chrXV:487444-487707 6.69e-01 100 chrXV:505140-505482 5.80e-03 31_[+3(4.07e-06)]_55 chrXV:505775-506728 2.73e-01 100 chrXV:571614-572155 1.00e+00 100 chrXV:594320-594606 9.80e-01 100 chrXV:663485-664074 1.00e+00 100 chrXV:678222-679113 9.86e-01 100 chrXV:710074-710527 8.92e-01 100 chrXV:711881-712676 5.38e-01 100 chrXV:779752-780972 1.26e-01 100 chrXV:853997-854784 5.11e-01 100 chrXV:866534-867930 4.69e-01 100 chrXV:976383-976705 7.96e-01 100 chrXV:978877-979170 4.72e-01 100 chrXV:980590-981049 9.98e-01 100 chrXV:1003994-1004319 9.13e-01 100 chrXV:1025630-1027123 2.27e-01 100 chrXV:1027632-1029649 2.94e-01 100 chrXVI:55845-56351 2.35e-02 100 chrXVI:76401-77238 2.38e-01 100 chrXVI:188142-189231 4.72e-01 100 chrXVI:209869-210443 9.59e-01 100 chrXVI:280876-281892 4.82e-01 100 chrXVI:302718-302928 1.13e-02 54_[+3(2.75e-06)]_32 chrXVI:338802-339117 4.78e-01 100 chrXVI:360054-360325 8.54e-01 100 chrXVI:378709-378984 7.67e-04 18_[-3(1.09e-06)]_11_[-3(1.57e-06)]_\ 43 chrXVI:404624-406832 3.17e-01 100 chrXVI:432571-434388 8.40e-02 100 chrXVI:435680-436136 3.05e-06 36_[-1(5.35e-09)]_35 chrXVI:520170-520486 1.56e-02 54_[-3(4.93e-05)]_16_[+3(9.88e-06)]_\ 2 chrXVI:559321-560450 3.38e-01 100 chrXVI:572072-572504 1.24e-12 29_[+2(1.49e-08)]_14_[+1(1.11e-11)]_\ 1 chrXVI:581787-582446 4.50e-08 37_[+1(5.61e-12)]_34 chrXVI:622078-622826 5.08e-01 100 chrXVI:689344-689885 5.94e-03 7_[+2(9.75e-05)]_66 chrXVI:699889-700350 2.51e-03 63_[+3(5.85e-06)]_23 chrXVI:731953-732300 1.82e-03 26_[+3(9.51e-07)]_60 chrXVI:744111-744532 5.40e-10 11_[+2(4.10e-08)]_15_[+1(2.82e-08)]_\ 18 chrXVI:768801-769466 6.17e-01 100 chrXVI:775635-776083 1.84e-02 1_[-2(5.97e-06)]_72 chrXVI:794071-794733 5.92e-01 100 chrXVI:810578-810861 1.33e-10 5_[+2(8.59e-09)]_17_[+1(3.84e-09)]_\ 22 chrXVI:819364-820302 9.89e-01 100 chrXVI:860125-860612 3.57e-05 59_[+2(4.79e-09)]_14 chrXVI:879762-880528 8.82e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************