******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--STE12/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:81868-82273 1.0000 100 chrI:138953-139335 1.0000 100 chrI:166173-166946 1.0000 100 chrI:202401-202793 1.0000 100 chrII:9464-9956 1.0000 100 chrII:36246-36548 1.0000 100 chrII:44988-45317 1.0000 100 chrII:59978-61588 1.0000 100 chrII:81152-84077 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chrXVI:210020-210440 1.0000 100 chrXVI:214796-215280 1.0000 100 chrXVI:281663-282976 1.0000 100 chrXVI:302668-302925 1.0000 100 chrXVI:303239-303970 1.0000 100 chrXVI:310666-312836 1.0000 100 chrXVI:338770-339224 1.0000 100 chrXVI:378703-378984 1.0000 100 chrXVI:404926-405964 1.0000 100 chrXVI:406229-407823 1.0000 100 chrXVI:432537-434359 1.0000 100 chrXVI:435654-436184 1.0000 100 chrXVI:502912-503170 1.0000 100 chrXVI:520183-520508 1.0000 100 chrXVI:560047-560454 1.0000 100 chrXVI:571671-571848 1.0000 100 chrXVI:572021-572454 1.0000 100 chrXVI:581845-582429 1.0000 100 chrXVI:585591-586352 1.0000 100 chrXVI:622337-622825 1.0000 100 chrXVI:678877-679569 1.0000 100 chrXVI:689409-689881 1.0000 100 chrXVI:699866-700731 1.0000 100 chrXVI:731917-732300 1.0000 100 chrXVI:744078-744656 1.0000 100 chrXVI:767925-769529 1.0000 100 chrXVI:775649-776027 1.0000 100 chrXVI:786243-787621 1.0000 100 chrXVI:794470-796416 1.0000 100 chrXVI:810585-810846 1.0000 100 chrXVI:819348-819927 1.0000 100 chrXVI:829104-829342 1.0000 100 chrXVI:860173-860663 1.0000 100 chrXVI:880078-880588 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--STE12/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--STE12/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--STE12/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 551 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 55100 N= 551 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.304 C 0.196 G 0.196 T 0.304 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--STE12/background): A 0.311 C 0.189 G 0.189 T 0.311 ******************************************************************************** ******************************************************************************** MOTIF SBSGGRRTCGAACCCVSGAYCTYMNGVTT MEME-1 width = 29 sites = 71 llr = 1329 E-value = 5.2e-252 ******************************************************************************** -------------------------------------------------------------------------------- Motif SBSGGRRTCGAACCCVSGAYCTYMNGVTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:13:64:::aa::13:25::1143141: pos.-specific C 5431::1:7:::a7633:15525433222 probability G 3466a43::a:::1345811221126412 matrix T :3::::2a3::::31:2:3326322::66 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * * **** * Entropy 1.2 * ****** * (27.0 bits) 1.0 **** ******* * * 0.7 ***** ******** ** ** * 0.5 ****** *********** ** * **** 0.2 ************************ **** 0.0 ----------------------------- Multilevel CCGGGAATCGAACCCGGGACCTCCAGATT consensus GGCA GG T TGCCATTT TACCGCG sequence AT A G T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBSGGRRTCGAACCCVSGAYCTYMNGVTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:210020-210440 + 20 2.14e-13 AACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrXIII:290505-291124 - 72 2.14e-13 . CGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrX:115751-116200 + 22 2.14e-13 TACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrVII:541716-542153 - 1 2.14e-13 CACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTG chrV:176920-177392 - 28 2.14e-13 TACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrIV:1016974-1017492 + 32 2.14e-13 AACTCCGAAG CGGGGAGTCGAACCCCGGTCTCCACGGTG AGAACGTGAT chrXVI:880078-880588 + 21 1.83e-11 AATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrV:551003-551607 + 38 1.83e-11 ATTGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrV:443136-443335 + 25 1.83e-11 TATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrXII:448462-448938 + 8 2.47e-11 GGTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrIV:802604-802836 + 69 2.47e-11 AGAGGTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATC AAA chrXVI:860173-860663 - 45 5.81e-11 TCTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrXVI:581845-582429 - 11 5.81e-11 AAAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrXV:281777-282610 - 55 5.81e-11 AATGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrXIII:480446-480881 + 16 5.81e-11 GAAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrVI:226513-226903 + 38 5.81e-11 TAAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrIX:299968-300498 + 53 5.81e-11 ATAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrVIII:475480-475907 + 71 9.97e-11 AATGTTCCAA CCGAGGATCGAACTCGGGACCTTTGCCGT G chrIV:1075322-1075733 + 3 9.97e-11 AA CCGAGGATCGAACTCGGGACCTTTGCCGT GTGAAGGCAA chrXV:288087-288443 - 29 1.67e-10 TATCTCCCGG GGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrXIII:168690-169005 - 50 1.67e-10 TATCTCCCGG GGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrX:542776-543237 + 8 1.67e-10 CTCCCGG GGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrVI:167284-167653 - 71 1.67e-10 G GGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrXII:214715-215059 + 54 1.89e-10 AATGGACGCA ACCGGAATCGAACCGATGACCTCTTCCTT GCAAGGGAAG chrV:311814-312330 + 9 1.89e-10 TGGACGCA ACCGGAATCGAACCGATGACCTCTTCCTT GCAAGGGAAG chrXIII:747765-748124 + 6 2.14e-10 TCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrXIII:372223-372741 + 21 2.14e-10 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXIII:131613-132061 + 46 2.14e-10 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrXI:307946-308451 + 4 2.14e-10 TCG CCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrX:374216-374783 + 65 2.14e-10 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTC chrVII:823351-823686 - 51 2.14e-10 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrVII:736201-736524 - 63 2.14e-10 ACACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrVII:411913-412707 + 42 2.14e-10 CTTGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXIII:195936-196308 + 4 3.48e-10 GAG CTGGGAATTGAACCCAGGGCCTCTCGCAT GCTTTGTCTT chrVIII:388705-389193 + 2 3.48e-10 G CTGGGAATTGAACCCAGGGCCTCTCGCAT GCTTTGTCTT chrXIII:807984-808508 + 58 4.40e-10 GAAGGTCCCA CCCGGATTCGAACTGGGGTTGTTCGGATC AGAACCGAAA chrXIII:463440-463830 - 4 6.20e-10 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCG ACA chrXI:513229-513509 + 21 6.20e-10 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrX:538524-538714 - 21 6.20e-10 AACGTTCCGT ACGGGACTCGAACCCGCAGTCTTCTCCTT AGGAGGGAGA chrX:355212-355737 - 67 6.20e-10 CGCGA CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrVII:544427-544840 + 2 6.20e-10 A CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrVII:531464-531798 - 64 6.20e-10 CTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrIX:336106-336670 + 19 6.20e-10 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrII:405677-406354 - 30 6.20e-10 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrX:422668-423373 - 3 9.64e-10 TGTGCTCCAG GGGAGGTTCGAACTCTCGACCTTCAGATT AT chrXVI:810585-810846 - 48 1.81e-09 TACGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXV:228170-228525 - 71 1.81e-09 A GTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXIV:632498-632869 - 3 1.81e-09 AACGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATT AA chrXIV:104624-105035 - 62 1.81e-09 TATGCTTCCA ATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrVII:730975-731396 - 39 1.81e-09 AACGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrVI:137301-137748 + 20 1.81e-09 AACGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXI:490773-491301 - 17 3.60e-09 TTCTTCCCCG CCAGGACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrXVI:435654-436184 + 32 8.89e-09 AAAGCTCGCA CTCAGGATCGAACTAAGGACCAACAGATT TGCAATCTGC chrVII:706942-707286 + 52 8.89e-09 AAAGCTCGCA CTCAGGATCGAACTAAGGACCAACAGATT TGCAATCTGC chrXVI:622337-622825 + 17 1.05e-08 AATGCGAATT CTGTGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrXVI:560047-560454 + 6 1.05e-08 GAATT CTGTGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrVII:700383-701154 - 2 1.35e-08 ATTGATACCC GCGGGGTTTGAACCCGCGCCTCCGAAGAG A chrX:197194-197530 + 9 2.02e-08 TGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrVII:774142-774595 - 67 2.02e-08 ACGAG TCCGGAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrXVI:744078-744656 - 2 2.36e-08 TTTGCCACCT GTCAGAATTGAACTAACGACCTTTGCATT A chrIV:519654-519905 - 61 3.44e-08 ATTGAAGGAT GCGAGGTTCGAACTCGCGCGGACAACCGT CCAACAGATC chrII:347424-347914 - 31 3.44e-08 ACTGAAGGAT GCGAGGTTCGAACTCGCGCGGACAACCGT CCAACAGATC chrXII:167737-168224 + 22 1.09e-07 AACGACAACT GCAGGACTCGAACCTGCGCGGGCAAAGCC CAAAAGATTT chrXI:313298-313601 + 10 1.09e-07 ATGCCATCT CCTAGAATCGAACCAGGGTTTCATCGGCC ACAACGATGT chrVIII:132803-133300 + 33 1.09e-07 ATCGACAACT GCAGGACTCGAACCTGCGCGGGCAAAGCC CAAAAGATTT chrVIII:62625-63040 - 8 1.09e-07 AATGCCATCT CCTAGAATCGAACCAGGGTTTCATCGGCC ACAACGA chrII:226972-227350 - 9 1.09e-07 AACGACAACT GCAGGACTCGAACCTGCGCGGGCAAAGCC CAAAAGAT chrXVI:689409-689881 - 15 1.88e-07 TACGACACCA GCAGGATTTGAACCAGCGCGGGCAGAGCC CAACAGATTT chrV:288127-288857 + 9 1.88e-07 CGACACCA GCAGGATTTGAACCAGCGCGGGCAGAGCC CAACAGATTT chrIII:227756-228215 - 71 1.88e-07 A GCAGGATTTGAACCAGCGCGGGCAGAGCC CAAGAGATAG chrIII:149722-150200 - 44 2.35e-07 AATAGCGCCG CTCGGTTTCGATCCGAGGACATCAGGGTT ATGAGCCCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBSGGRRTCGAACCCVSGAYCTYMNGVTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:210020-210440 2.1e-13 19_[+1]_52 chrXIII:290505-291124 2.1e-13 71_[-1] chrX:115751-116200 2.1e-13 21_[+1]_50 chrVII:541716-542153 2.1e-13 [-1]_71 chrV:176920-177392 2.1e-13 27_[-1]_44 chrIV:1016974-1017492 2.1e-13 31_[+1]_40 chrXVI:880078-880588 1.8e-11 20_[+1]_51 chrV:551003-551607 1.8e-11 37_[+1]_34 chrV:443136-443335 1.8e-11 24_[+1]_47 chrXII:448462-448938 2.5e-11 7_[+1]_64 chrIV:802604-802836 2.5e-11 68_[+1]_3 chrXVI:860173-860663 5.8e-11 44_[-1]_27 chrXVI:581845-582429 5.8e-11 10_[-1]_61 chrXV:281777-282610 5.8e-11 54_[-1]_17 chrXIII:480446-480881 5.8e-11 15_[+1]_56 chrVI:226513-226903 5.8e-11 37_[+1]_34 chrIX:299968-300498 5.8e-11 52_[+1]_19 chrVIII:475480-475907 1e-10 70_[+1]_1 chrIV:1075322-1075733 1e-10 2_[+1]_69 chrXV:288087-288443 1.7e-10 28_[-1]_43 chrXIII:168690-169005 1.7e-10 49_[-1]_22 chrX:542776-543237 1.7e-10 7_[+1]_64 chrVI:167284-167653 1.7e-10 70_[-1]_1 chrXII:214715-215059 1.9e-10 53_[+1]_18 chrV:311814-312330 1.9e-10 8_[+1]_63 chrXIII:747765-748124 2.1e-10 5_[+1]_66 chrXIII:372223-372741 2.1e-10 20_[+1]_51 chrXIII:131613-132061 2.1e-10 45_[+1]_26 chrXI:307946-308451 2.1e-10 3_[+1]_68 chrX:374216-374783 2.1e-10 64_[+1]_7 chrVII:823351-823686 2.1e-10 50_[-1]_21 chrVII:736201-736524 2.1e-10 62_[-1]_9 chrVII:411913-412707 2.1e-10 41_[+1]_30 chrXIII:195936-196308 3.5e-10 3_[+1]_68 chrVIII:388705-389193 3.5e-10 1_[+1]_70 chrXIII:807984-808508 4.4e-10 57_[+1]_14 chrXIII:463440-463830 6.2e-10 3_[-1]_68 chrXI:513229-513509 6.2e-10 20_[+1]_51 chrX:538524-538714 6.2e-10 20_[-1]_51 chrX:355212-355737 6.2e-10 66_[-1]_5 chrVII:544427-544840 6.2e-10 1_[+1]_70 chrVII:531464-531798 6.2e-10 63_[-1]_8 chrIX:336106-336670 6.2e-10 18_[+1]_53 chrII:405677-406354 6.2e-10 29_[-1]_42 chrX:422668-423373 9.6e-10 2_[-1]_69 chrXVI:810585-810846 1.8e-09 47_[-1]_24 chrXV:228170-228525 1.8e-09 70_[-1]_1 chrXIV:632498-632869 1.8e-09 2_[-1]_69 chrXIV:104624-105035 1.8e-09 61_[-1]_10 chrVII:730975-731396 1.8e-09 38_[-1]_33 chrVI:137301-137748 1.8e-09 19_[+1]_52 chrXI:490773-491301 3.6e-09 16_[-1]_55 chrXVI:435654-436184 8.9e-09 31_[+1]_40 chrVII:706942-707286 8.9e-09 51_[+1]_20 chrXVI:622337-622825 1.1e-08 16_[+1]_55 chrXVI:560047-560454 1.1e-08 5_[+1]_66 chrVII:700383-701154 1.4e-08 1_[-1]_70 chrX:197194-197530 2e-08 8_[+1]_63 chrVII:774142-774595 2e-08 66_[-1]_5 chrXVI:744078-744656 2.4e-08 1_[-1]_70 chrIV:519654-519905 3.4e-08 60_[-1]_11 chrII:347424-347914 3.4e-08 30_[-1]_41 chrXII:167737-168224 1.1e-07 21_[+1]_50 chrXI:313298-313601 1.1e-07 9_[+1]_62 chrVIII:132803-133300 1.1e-07 32_[+1]_39 chrVIII:62625-63040 1.1e-07 7_[-1]_64 chrII:226972-227350 1.1e-07 8_[-1]_63 chrXVI:689409-689881 1.9e-07 14_[-1]_57 chrV:288127-288857 1.9e-07 8_[+1]_63 chrIII:227756-228215 1.9e-07 70_[-1]_1 chrIII:149722-150200 2.4e-07 43_[-1]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBSGGRRTCGAACCCVSGAYCTYMNGVTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SBSGGRRTCGAACCCVSGAYCTYMNGVTT width=29 seqs=71 chrXVI:210020-210440 ( 20) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrXIII:290505-291124 ( 72) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrX:115751-116200 ( 22) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrVII:541716-542153 ( 1) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrV:176920-177392 ( 28) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrIV:1016974-1017492 ( 32) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrXVI:880078-880588 ( 21) AGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrV:551003-551607 ( 38) AGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrV:443136-443335 ( 25) AGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrXII:448462-448938 ( 8) CCCGGATTCGAACCGGGGTTGTCCGGATC 1 chrIV:802604-802836 ( 69) CCCGGATTCGAACCGGGGTTGTCCGGATC 1 chrXVI:860173-860663 ( 45) CCCGGAATCGAACCGGGGGCCCAACGATG 1 chrXVI:581845-582429 ( 11) AGGGGGCTCGAACCCCTAACCTTATGATT 1 chrXV:281777-282610 ( 55) CCCGGAATCGAACCGGGGGCCCAACGATG 1 chrXIII:480446-480881 ( 16) AGGGGGCTCGAACCCCTAACCTTATGATT 1 chrVI:226513-226903 ( 38) AGGGGGCTCGAACCCCTAACCTTATGATT 1 chrIX:299968-300498 ( 53) AGGGGGCTCGAACCCCTAACCTTATGATT 1 chrVIII:475480-475907 ( 71) CCGAGGATCGAACTCGGGACCTTTGCCGT 1 chrIV:1075322-1075733 ( 3) CCGAGGATCGAACTCGGGACCTTTGCCGT 1 chrXV:288087-288443 ( 29) GGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrXIII:168690-169005 ( 50) GGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrX:542776-543237 ( 8) GGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrVI:167284-167653 ( 71) GGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrXII:214715-215059 ( 54) ACCGGAATCGAACCGATGACCTCTTCCTT 1 chrV:311814-312330 ( 9) ACCGGAATCGAACCGATGACCTCTTCCTT 1 chrXIII:747765-748124 ( 6) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrXIII:372223-372741 ( 21) CCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrXIII:131613-132061 ( 46) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrXI:307946-308451 ( 4) CCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrX:374216-374783 ( 65) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrVII:823351-823686 ( 51) CCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrVII:736201-736524 ( 63) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrVII:411913-412707 ( 42) CCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrXIII:195936-196308 ( 4) CTGGGAATTGAACCCAGGGCCTCTCGCAT 1 chrVIII:388705-389193 ( 2) CTGGGAATTGAACCCAGGGCCTCTCGCAT 1 chrXIII:807984-808508 ( 58) CCCGGATTCGAACTGGGGTTGTTCGGATC 1 chrXIII:463440-463830 ( 4) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrXI:513229-513509 ( 21) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrX:538524-538714 ( 21) ACGGGACTCGAACCCGCAGTCTTCTCCTT 1 chrX:355212-355737 ( 67) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrVII:544427-544840 ( 2) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrVII:531464-531798 ( 64) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrIX:336106-336670 ( 19) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrII:405677-406354 ( 30) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrX:422668-423373 ( 3) GGGAGGTTCGAACTCTCGACCTTCAGATT 1 chrXVI:810585-810846 ( 48) GTGAGGGTTGAACTCACGATCTTGCGATT 1 chrXV:228170-228525 ( 71) GTGAGGGTTGAACTCACGATCTTGCGATT 1 chrXIV:632498-632869 ( 3) GTGAGGGTTGAACTCACGATCTTGCGATT 1 chrXIV:104624-105035 ( 62) ATCGGATTTGAACCGATGATCTCCACATT 1 chrVII:730975-731396 ( 39) GTGAGGGTTGAACTCACGATCTTGCGATT 1 chrVI:137301-137748 ( 20) GTGAGGGTTGAACTCACGATCTTGCGATT 1 chrXI:490773-491301 ( 17) CCAGGACTTGAACCTGGAATCTTCTGGTT 1 chrXVI:435654-436184 ( 32) CTCAGGATCGAACTAAGGACCAACAGATT 1 chrVII:706942-707286 ( 52) CTCAGGATCGAACTAAGGACCAACAGATT 1 chrXVI:622337-622825 ( 17) CTGTGGATCGAACACAGGACCTCCAGATA 1 chrXVI:560047-560454 ( 6) CTGTGGATCGAACACAGGACCTCCAGATA 1 chrVII:700383-701154 ( 2) GCGGGGTTTGAACCCGCGCCTCCGAAGAG 1 chrX:197194-197530 ( 9) TCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrVII:774142-774595 ( 67) TCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrXVI:744078-744656 ( 2) GTCAGAATTGAACTAACGACCTTTGCATT 1 chrIV:519654-519905 ( 61) GCGAGGTTCGAACTCGCGCGGACAACCGT 1 chrII:347424-347914 ( 31) GCGAGGTTCGAACTCGCGCGGACAACCGT 1 chrXII:167737-168224 ( 22) GCAGGACTCGAACCTGCGCGGGCAAAGCC 1 chrXI:313298-313601 ( 10) CCTAGAATCGAACCAGGGTTTCATCGGCC 1 chrVIII:132803-133300 ( 33) GCAGGACTCGAACCTGCGCGGGCAAAGCC 1 chrVIII:62625-63040 ( 8) CCTAGAATCGAACCAGGGTTTCATCGGCC 1 chrII:226972-227350 ( 9) GCAGGACTCGAACCTGCGCGGGCAAAGCC 1 chrXVI:689409-689881 ( 15) GCAGGATTTGAACCAGCGCGGGCAGAGCC 1 chrV:288127-288857 ( 9) GCAGGATTTGAACCAGCGCGGGCAGAGCC 1 chrIII:227756-228215 ( 71) GCAGGATTTGAACCAGCGCGGGCAGAGCC 1 chrIII:149722-150200 ( 44) CTCGGTTTCGATCCGAGGACATCAGGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBSGGRRTCGAACCCVSGAYCTYMNGVTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 39672 bayes= 10.52 E= 5.2e-252 -56 134 57 -346 -1279 106 90 -29 -166 64 161 -346 -22 -175 177 -346 -1279 -1279 240 -1279 86 -1279 116 -446 49 -58 50 -88 -1279 -1279 -1279 169 -1279 190 -1279 -7 -1279 -1279 240 -1279 169 -1279 -1279 -1279 167 -1279 -1279 -446 -1279 240 -1279 -1279 -346 181 -175 -29 -146 161 42 -246 -14 84 95 -446 -346 64 134 -66 -38 -1279 201 -1279 82 -58 -143 -29 -1279 154 -75 12 -446 154 16 -46 -246 6 -5 86 -188 134 -94 12 18 111 -116 -100 6 50 -5 -46 -166 64 168 -1279 39 16 101 -1279 -214 16 -75 96 -346 -29 25 93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBSGGRRTCGAACCCVSGAYCTYMNGVTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 71 E= 5.2e-252 0.211268 0.478873 0.281690 0.028169 0.000000 0.394366 0.352113 0.253521 0.098592 0.295775 0.577465 0.028169 0.267606 0.056338 0.647887 0.028169 0.000000 0.000000 1.000000 0.000000 0.563380 0.000000 0.422535 0.014085 0.436620 0.126761 0.267606 0.169014 0.000000 0.000000 0.000000 1.000000 0.000000 0.704225 0.000000 0.295775 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.985915 0.000000 0.000000 0.014085 0.000000 1.000000 0.000000 0.000000 0.028169 0.661972 0.056338 0.253521 0.112676 0.577465 0.253521 0.056338 0.281690 0.338028 0.366197 0.014085 0.028169 0.295775 0.478873 0.197183 0.239437 0.000000 0.760563 0.000000 0.549296 0.126761 0.070423 0.253521 0.000000 0.549296 0.112676 0.338028 0.014085 0.549296 0.211268 0.225352 0.056338 0.197183 0.183099 0.563380 0.084507 0.478873 0.098592 0.338028 0.352113 0.408451 0.084507 0.154930 0.323944 0.267606 0.183099 0.225352 0.098592 0.295775 0.605634 0.000000 0.408451 0.211268 0.380282 0.000000 0.070423 0.211268 0.112676 0.605634 0.028169 0.154930 0.225352 0.591549 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBSGGRRTCGAACCCVSGAYCTYMNGVTT MEME-1 regular expression -------------------------------------------------------------------------------- [CGA][CGT][GC][GA]G[AG][AG]T[CT]GAAC[CT][CG][GCA][GC][GA][AT][CT][CTG]T[CT][CA][ACT][GC][AGC][TC][TG] -------------------------------------------------------------------------------- Time 295.40 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGYYBAGTGGKTWRAGBSNB MEME-2 width = 21 sites = 80 llr = 1138 E-value = 1.9e-161 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGYYBAGTGGKTWRAGBSNB MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3:::1a1::::26562::32 pos.-specific C :::662::12::2::1:4524 probability G :7a:12:8:5a51:4263532 matrix T a::434::93:6641122:23 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * * * * Relative 1.4 * * ** * Entropy 1.2 **** *** * * (20.5 bits) 1.0 **** *** ** * 0.7 ***** *** ** * *** 0.5 ***** ****** ** *** 0.2 ******************* * 0.0 --------------------- Multilevel TGGCCTAGTGGTTAAAGCGAC consensus A TTC T G TG GCGT sequence G T CG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYBAGTGGKTWRAGBSNB MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrV:288127-288857 - 55 1.09e-10 ATAGGCACTA TGGCCGAGTGGTTAAGGCGAC AGACTTGAAA chrXVI:880078-880588 - 59 2.17e-10 AATGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrXIV:602069-602529 + 70 2.17e-10 AATGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrV:551003-551607 - 76 2.17e-10 CTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrV:443136-443335 - 63 2.17e-10 TTTGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrXII:962895-963248 - 7 4.28e-10 GACGGAGGGT TGGCCGAGTGGTCTAAGGCGG CAGACT chrX:424303-424728 - 23 4.28e-10 GATGGAGGGT TGGCCGAGTGGTCTAAGGCGG CAGACTTAAG chrIV:519654-519905 + 21 4.28e-10 TACGGAGGGT TGGCCGAGTGGTCTAAGGCGG CAGACTTAAG chrIII:227756-228215 + 14 4.28e-10 AATGGCACTA TGGCCGAGTGGTTAAGGCGAG AGACTCGAAT chrXV:274492-274967 + 1 6.61e-10 . TGGCCGAGTGGTTAAGGCGAT GCCCTGCTAT chrIV:1150703-1151160 - 33 6.61e-10 TCAGTCCCAG TGGCCGAGTGGTTAAGGCGAT GCCTGCTATT chrXIII:259027-259450 - 24 1.74e-09 TATGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrXII:167737-168224 - 68 1.74e-09 TATGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrVIII:132803-133300 - 79 1.74e-09 T TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrV:86456-86787 + 40 1.74e-09 TATGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrIV:437558-437969 + 66 1.74e-09 TAAGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrXIV:104624-105035 + 33 2.97e-09 TGAGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrIX:325403-326059 + 74 2.97e-09 CGAGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTA chrXVI:810585-810846 + 18 4.98e-09 TGCGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrXV:228170-228525 + 41 4.98e-09 TTAGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrVII:730975-731396 + 9 4.98e-09 AGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrVI:137301-137748 - 58 4.98e-09 ACTGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrXIII:504672-505174 + 29 9.32e-09 AGTGGTTGTT TGGCCGAGCGGTCTAAGGCGC CTGATTCAAG chrXII:628195-628612 + 37 9.32e-09 AGTGGTTGTT TGGCCGAGCGGTCTAAGGCGC CTGATTCAAG chrVII:422905-423327 + 33 9.32e-09 AGTGGTTGTT TGGCCGAGCGGTCTAAGGCGC CTGATTCAAG chrVII:205151-205992 + 7 9.32e-09 GTTGTT TGGCCGAGCGGTCTAAGGCGC CTGATTCAAG chrXII:656848-657177 - 17 1.45e-08 ATTGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrX:197194-197530 - 46 1.45e-08 TTAGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrVII:774142-774595 + 38 1.45e-08 ATTGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrV:311814-312330 - 46 1.45e-08 TCTGGGCACA TGGCGCAGTTGGTAGCGCGCT TCCCTTGCAA chrXVI:622337-622825 - 73 1.93e-08 GCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrXVI:560047-560454 - 62 1.93e-08 TGAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrXIV:374664-375075 + 57 1.93e-08 TAAGCGGACT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrVIII:358308-358779 - 49 1.93e-08 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrVIII:237782-238079 - 32 1.93e-08 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrVII:440642-440916 - 51 1.93e-08 TATGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrII:36246-36548 + 58 1.93e-08 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrXIII:372223-372741 - 59 7.76e-08 CCTGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrXI:379470-379919 + 43 7.76e-08 ATAGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrXI:307946-308451 - 42 7.76e-08 AGTGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrX:378170-378534 + 65 7.76e-08 ATAGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrVII:823351-823686 + 21 7.76e-08 AGTGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrVII:411913-412707 - 80 7.76e-08 . TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrV:438493-438922 + 50 7.76e-08 TTAGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrXII:605238-605626 - 23 1.35e-07 AATGCTCGTG TAGCTCAGTGGTTAGAGCTTC GTGCTTATAG chrXIII:195936-196308 - 71 2.04e-07 AAGGGCGTG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrXII:92425-92660 + 63 2.04e-07 TAAGGGCGTG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrVIII:388705-389193 - 69 2.04e-07 CATGGGCGTG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrI:138953-139335 + 65 2.04e-07 TACGGGCGTG TGGTCTAGTGGTATGATTCTC GCTTTGGGCG chrXVI:860173-860663 + 18 3.01e-07 CAAGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrXV:281777-282610 + 28 3.01e-07 AGCGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrVII:930952-931139 - 1 3.01e-07 TAAGCGCAAG TGGTTTAGTGGTAAAATCCAA chrVI:162050-162391 + 65 3.01e-07 CAAGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrIV:83322-83794 + 47 3.01e-07 TTAGCGCAAG TGGTTTAGTGGTAAAATCCAA CGTTGCCATC chrX:390912-391308 - 28 3.63e-07 AGTGCTTCAG TAGCTCAGTAGGAAGAGCGTC AGTCTCATAA chrIV:1175593-1176052 + 64 3.63e-07 AAAGCTTCAG TAGCTCAGTAGGAAGAGCGTC AGTCTCATAA chrXIII:480446-480881 - 53 6.15e-07 GTAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrVI:226513-226903 - 75 6.15e-07 CTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrXIII:168690-169005 + 5 6.68e-07 TCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrX:542776-543237 - 61 6.68e-07 ATACTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrVI:167284-167653 + 26 6.68e-07 CGACTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrII:326628-327078 - 35 1.08e-06 CCGGGTCCAA TGGTCCAGTGGTTCAAGACGT CGCCTTTACA chrXVI:75548-76718 + 79 1.35e-06 TTTCTGTTGT TGGCTTAGTGGTTCAGTTCAT T chrXV:110863-111190 - 30 1.79e-06 CCCGGGCGGT TAGTGTAGTGGTTATCATCCC ACCCTTCCAA chrXI:513229-513509 - 57 1.92e-06 CGTTCCGTGA TAGTTTAATGGTCAGAATGGG CGCTTGTCGC chrX:374216-374783 - 19 1.92e-06 TCTTCCGTGA TAGTTTAATGGTCAGAATGGG CGCTTGTCGC chrX:355212-355737 + 39 1.92e-06 TCTTCCGTGA TAGTTTAATGGTCAGAATGGG CGCTTGTCGC chrX:204510-204971 + 52 1.92e-06 AAATCCGTGA TAGTTTAATGGTCAGAATGGG CGCTTGTCGC chrVII:544427-544840 - 38 1.92e-06 TCTTCCGTGA TAGTTTAATGGTCAGAATGGG CGCTTGTCGC chrVII:531464-531798 + 36 1.92e-06 ACTTCCGTGA TAGTTTAATGGTCAGAATGGG CGCTTGTCGC chrIX:336106-336670 - 55 1.92e-06 AAATCCGTGA TAGTTTAATGGTCAGAATGGG CGCTTGTCGC chrII:405677-406354 + 2 1.92e-06 A TAGTTTAATGGTCAGAATGGG CGCTTGTCGC chrXV:671079-672415 + 45 2.85e-06 ACCATTTCCT TGGCGAAGTAGTTATATGGGG AAAACTCAAC chrXIV:631829-632008 - 22 3.03e-06 ACCGGGCGTG TGGTCTAGAGGTATGATTCTC GCTTAGGGTG chrIII:123496-123786 - 30 3.03e-06 GGAGGGCGTG TGGTCTAGAGGTATGATTCTC GCTTAGGGTG chrX:233226-234107 - 25 4.09e-06 ATAAGCTCCT TAGCTTATTGGTGTAGGTGGT AATTTCCCTT chrXII:818510-818716 + 53 5.12e-06 TATGCTCCTC TAGTGCAATGGTTAGCATGCA TTCTTCCGGT chrIII:163482-163886 - 79 7.39e-06 A TGGCCGATTCGGTATCCGCGC GCACTTCCCC chrXII:448462-448938 - 44 1.13e-05 TCCGGTCCTA TAGTGTAGTGGTTATCACTTT CGGTTTTGAT chrII:350617-351053 + 49 1.13e-05 AAGGGTTTTA TAGTGTAGTGGTTATCACTTT CGGTTTTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYBAGTGGKTWRAGBSNB MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:288127-288857 1.1e-10 54_[-2]_25 chrXVI:880078-880588 2.2e-10 58_[-2]_21 chrXIV:602069-602529 2.2e-10 69_[+2]_10 chrV:551003-551607 2.2e-10 75_[-2]_4 chrV:443136-443335 2.2e-10 62_[-2]_17 chrXII:962895-963248 4.3e-10 6_[-2]_73 chrX:424303-424728 4.3e-10 22_[-2]_57 chrIV:519654-519905 4.3e-10 20_[+2]_59 chrIII:227756-228215 4.3e-10 13_[+2]_66 chrXV:274492-274967 6.6e-10 [+2]_79 chrIV:1150703-1151160 6.6e-10 32_[-2]_47 chrXIII:259027-259450 1.7e-09 23_[-2]_56 chrXII:167737-168224 1.7e-09 67_[-2]_12 chrVIII:132803-133300 1.7e-09 78_[-2]_1 chrV:86456-86787 1.7e-09 39_[+2]_40 chrIV:437558-437969 1.7e-09 65_[+2]_14 chrXIV:104624-105035 3e-09 32_[+2]_47 chrIX:325403-326059 3e-09 73_[+2]_6 chrXVI:810585-810846 5e-09 17_[+2]_62 chrXV:228170-228525 5e-09 40_[+2]_39 chrVII:730975-731396 5e-09 8_[+2]_71 chrVI:137301-137748 5e-09 57_[-2]_22 chrXIII:504672-505174 9.3e-09 28_[+2]_51 chrXII:628195-628612 9.3e-09 36_[+2]_43 chrVII:422905-423327 9.3e-09 32_[+2]_47 chrVII:205151-205992 9.3e-09 6_[+2]_73 chrXII:656848-657177 1.4e-08 16_[-2]_63 chrX:197194-197530 1.4e-08 45_[-2]_34 chrVII:774142-774595 1.4e-08 37_[+2]_42 chrV:311814-312330 1.4e-08 45_[-2]_34 chrXVI:622337-622825 1.9e-08 72_[-2]_7 chrXVI:560047-560454 1.9e-08 61_[-2]_18 chrXIV:374664-375075 1.9e-08 56_[+2]_23 chrVIII:358308-358779 1.9e-08 48_[-2]_31 chrVIII:237782-238079 1.9e-08 31_[-2]_48 chrVII:440642-440916 1.9e-08 50_[-2]_29 chrII:36246-36548 1.9e-08 57_[+2]_22 chrXIII:372223-372741 7.8e-08 58_[-2]_21 chrXI:379470-379919 7.8e-08 42_[+2]_37 chrXI:307946-308451 7.8e-08 41_[-2]_38 chrX:378170-378534 7.8e-08 64_[+2]_15 chrVII:823351-823686 7.8e-08 20_[+2]_59 chrVII:411913-412707 7.8e-08 79_[-2] chrV:438493-438922 7.8e-08 49_[+2]_30 chrXII:605238-605626 1.3e-07 22_[-2]_57 chrXIII:195936-196308 2e-07 70_[-2]_9 chrXII:92425-92660 2e-07 62_[+2]_17 chrVIII:388705-389193 2e-07 68_[-2]_11 chrI:138953-139335 2e-07 64_[+2]_15 chrXVI:860173-860663 3e-07 17_[+2]_62 chrXV:281777-282610 3e-07 27_[+2]_52 chrVII:930952-931139 3e-07 [-2]_79 chrVI:162050-162391 3e-07 64_[+2]_15 chrIV:83322-83794 3e-07 46_[+2]_33 chrX:390912-391308 3.6e-07 27_[-2]_52 chrIV:1175593-1176052 3.6e-07 63_[+2]_16 chrXIII:480446-480881 6.1e-07 52_[-2]_27 chrVI:226513-226903 6.1e-07 74_[-2]_5 chrXIII:168690-169005 6.7e-07 4_[+2]_75 chrX:542776-543237 6.7e-07 60_[-2]_19 chrVI:167284-167653 6.7e-07 25_[+2]_54 chrII:326628-327078 1.1e-06 34_[-2]_45 chrXVI:75548-76718 1.3e-06 78_[+2]_1 chrXV:110863-111190 1.8e-06 29_[-2]_50 chrXI:513229-513509 1.9e-06 56_[-2]_23 chrX:374216-374783 1.9e-06 18_[-2]_61 chrX:355212-355737 1.9e-06 38_[+2]_41 chrX:204510-204971 1.9e-06 51_[+2]_28 chrVII:544427-544840 1.9e-06 37_[-2]_42 chrVII:531464-531798 1.9e-06 35_[+2]_44 chrIX:336106-336670 1.9e-06 54_[-2]_25 chrII:405677-406354 1.9e-06 1_[+2]_78 chrXV:671079-672415 2.8e-06 44_[+2]_35 chrXIV:631829-632008 3e-06 21_[-2]_58 chrIII:123496-123786 3e-06 29_[-2]_50 chrX:233226-234107 4.1e-06 24_[-2]_55 chrXII:818510-818716 5.1e-06 52_[+2]_27 chrIII:163482-163886 7.4e-06 78_[-2]_1 chrXII:448462-448938 1.1e-05 43_[-2]_36 chrII:350617-351053 1.1e-05 48_[+2]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYBAGTGGKTWRAGBSNB MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGYYBAGTGGKTWRAGBSNB width=21 seqs=80 chrV:288127-288857 ( 55) TGGCCGAGTGGTTAAGGCGAC 1 chrXVI:880078-880588 ( 59) TGGCCCAGTTGGTTAAGGCAC 1 chrXIV:602069-602529 ( 70) TGGCCCAGTTGGTTAAGGCAC 1 chrV:551003-551607 ( 76) TGGCCCAGTTGGTTAAGGCAC 1 chrV:443136-443335 ( 63) TGGCCCAGTTGGTTAAGGCAC 1 chrXII:962895-963248 ( 7) TGGCCGAGTGGTCTAAGGCGG 1 chrX:424303-424728 ( 23) TGGCCGAGTGGTCTAAGGCGG 1 chrIV:519654-519905 ( 21) TGGCCGAGTGGTCTAAGGCGG 1 chrIII:227756-228215 ( 14) TGGCCGAGTGGTTAAGGCGAG 1 chrXV:274492-274967 ( 1) TGGCCGAGTGGTTAAGGCGAT 1 chrIV:1150703-1151160 ( 33) TGGCCGAGTGGTTAAGGCGAT 1 chrXIII:259027-259450 ( 24) TGGCCGAGTGGTTAAGGCGAA 1 chrXII:167737-168224 ( 68) TGGCCGAGTGGTTAAGGCGAA 1 chrVIII:132803-133300 ( 79) TGGCCGAGTGGTTAAGGCGAA 1 chrV:86456-86787 ( 40) TGGCCGAGTGGTTAAGGCGAA 1 chrIV:437558-437969 ( 66) TGGCCGAGTGGTTAAGGCGAA 1 chrXIV:104624-105035 ( 33) TGGCCAAGTTGGTAAGGCGCC 1 chrIX:325403-326059 ( 74) TGGCCAAGTTGGTAAGGCGCC 1 chrXVI:810585-810846 ( 18) TGGCCAAGTTGGTTAAGGCGT 1 chrXV:228170-228525 ( 41) TGGCCAAGTTGGTTAAGGCGT 1 chrVII:730975-731396 ( 9) TGGCCAAGTTGGTTAAGGCGT 1 chrVI:137301-137748 ( 58) TGGCCAAGTTGGTTAAGGCGT 1 chrXIII:504672-505174 ( 29) TGGCCGAGCGGTCTAAGGCGC 1 chrXII:628195-628612 ( 37) TGGCCGAGCGGTCTAAGGCGC 1 chrVII:422905-423327 ( 33) TGGCCGAGCGGTCTAAGGCGC 1 chrVII:205151-205992 ( 7) TGGCCGAGCGGTCTAAGGCGC 1 chrXII:656848-657177 ( 17) TGGCGTAGTCGGTAGCGCGCT 1 chrX:197194-197530 ( 46) TGGCGTAGTCGGTAGCGCGCT 1 chrVII:774142-774595 ( 38) TGGCGTAGTCGGTAGCGCGCT 1 chrV:311814-312330 ( 46) TGGCGCAGTTGGTAGCGCGCT 1 chrXVI:622337-622825 ( 73) TAGCTCAGTTGGGAGAGCGCC 1 chrXVI:560047-560454 ( 62) TAGCTCAGTTGGGAGAGCGCC 1 chrXIV:374664-375075 ( 57) TAGCTCAGTTGGGAGAGCGCC 1 chrVIII:358308-358779 ( 49) TAGCTCAGTTGGGAGAGCGCC 1 chrVIII:237782-238079 ( 32) TAGCTCAGTTGGGAGAGCGCC 1 chrVII:440642-440916 ( 51) TAGCTCAGTTGGGAGAGCGCC 1 chrII:36246-36548 ( 58) TAGCTCAGTTGGGAGAGCGCC 1 chrXIII:372223-372741 ( 59) TGGTCTAGTCGGTTATGGCAT 1 chrXI:379470-379919 ( 43) TGGTCTAGTCGGTTATGGCAT 1 chrXI:307946-308451 ( 42) TGGTCTAGTCGGTTATGGCAT 1 chrX:378170-378534 ( 65) TGGTCTAGTCGGTTATGGCAT 1 chrVII:823351-823686 ( 21) TGGTCTAGTCGGTTATGGCAT 1 chrVII:411913-412707 ( 80) TGGTCTAGTCGGTTATGGCAT 1 chrV:438493-438922 ( 50) TGGTCTAGTCGGTTATGGCAT 1 chrXII:605238-605626 ( 23) TAGCTCAGTGGTTAGAGCTTC 1 chrXIII:195936-196308 ( 71) TGGTCTAGTGGTATGATTCTC 1 chrXII:92425-92660 ( 63) TGGTCTAGTGGTATGATTCTC 1 chrVIII:388705-389193 ( 69) TGGTCTAGTGGTATGATTCTC 1 chrI:138953-139335 ( 65) TGGTCTAGTGGTATGATTCTC 1 chrXVI:860173-860663 ( 18) TGGTTTAGTGGTAAAATCCAA 1 chrXV:281777-282610 ( 28) TGGTTTAGTGGTAAAATCCAA 1 chrVII:930952-931139 ( 1) TGGTTTAGTGGTAAAATCCAA 1 chrVI:162050-162391 ( 65) TGGTTTAGTGGTAAAATCCAA 1 chrIV:83322-83794 ( 47) TGGTTTAGTGGTAAAATCCAA 1 chrX:390912-391308 ( 28) TAGCTCAGTAGGAAGAGCGTC 1 chrIV:1175593-1176052 ( 64) TAGCTCAGTAGGAAGAGCGTC 1 chrXIII:480446-480881 ( 53) TGGCGCAATCGGTAGCGCGTA 1 chrVI:226513-226903 ( 75) TGGCGCAATCGGTAGCGCGTA 1 chrXIII:168690-169005 ( 5) TAGCCAAGTTGGTTTAAGGCG 1 chrX:542776-543237 ( 61) TAGCCAAGTTGGTTTAAGGCG 1 chrVI:167284-167653 ( 26) TAGCCAAGTTGGTTTAAGGCG 1 chrII:326628-327078 ( 35) TGGTCCAGTGGTTCAAGACGT 1 chrXVI:75548-76718 ( 79) TGGCTTAGTGGTTCAGTTCAT 1 chrXV:110863-111190 ( 30) TAGTGTAGTGGTTATCATCCC 1 chrXI:513229-513509 ( 57) TAGTTTAATGGTCAGAATGGG 1 chrX:374216-374783 ( 19) TAGTTTAATGGTCAGAATGGG 1 chrX:355212-355737 ( 39) TAGTTTAATGGTCAGAATGGG 1 chrX:204510-204971 ( 52) TAGTTTAATGGTCAGAATGGG 1 chrVII:544427-544840 ( 38) TAGTTTAATGGTCAGAATGGG 1 chrVII:531464-531798 ( 36) TAGTTTAATGGTCAGAATGGG 1 chrIX:336106-336670 ( 55) TAGTTTAATGGTCAGAATGGG 1 chrII:405677-406354 ( 2) TAGTTTAATGGTCAGAATGGG 1 chrXV:671079-672415 ( 45) TGGCGAAGTAGTTATATGGGG 1 chrXIV:631829-632008 ( 22) TGGTCTAGAGGTATGATTCTC 1 chrIII:123496-123786 ( 30) TGGTCTAGAGGTATGATTCTC 1 chrX:233226-234107 ( 25) TAGCTTATTGGTGTAGGTGGT 1 chrXII:818510-818716 ( 53) TAGTGCAATGGTTAGCATGCA 1 chrIII:163482-163886 ( 79) TGGCCGATTCGGTATCCGCGC 1 chrXII:448462-448938 ( 44) TAGTGTAGTGGTTATCACTTT 1 chrII:350617-351053 ( 49) TAGTGTAGTGGTTATCACTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYBAGTGGKTWRAGBSNB MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 44080 bayes= 10.048 E= 1.9e-161 -1297 -1297 -1297 169 6 -1297 183 -1297 -1297 -1297 240 -1297 -1297 169 -1297 32 -1297 154 -46 1 -131 33 17 45 169 -1297 -1297 -1297 -118 -1297 215 -363 -363 -192 -1297 157 -305 -22 151 -24 -1297 -1297 240 -1297 -1297 -1297 125 82 -93 -1 -92 82 89 -292 -1297 36 72 -1297 103 -164 98 -46 -22 -183 -73 -392 175 -93 -463 117 83 -47 -1297 129 140 -305 6 25 60 -93 -93 94 8 -18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYBAGTGGKTWRAGBSNB MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 80 E= 1.9e-161 0.000000 0.000000 0.000000 1.000000 0.325000 0.000000 0.675000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.612500 0.000000 0.387500 0.000000 0.550000 0.137500 0.312500 0.125000 0.237500 0.212500 0.425000 1.000000 0.000000 0.000000 0.000000 0.137500 0.000000 0.837500 0.025000 0.025000 0.050000 0.000000 0.925000 0.037500 0.162500 0.537500 0.262500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.450000 0.550000 0.162500 0.187500 0.100000 0.550000 0.575000 0.025000 0.000000 0.400000 0.512500 0.000000 0.387500 0.100000 0.612500 0.137500 0.162500 0.087500 0.187500 0.012500 0.637500 0.162500 0.012500 0.425000 0.337500 0.225000 0.000000 0.462500 0.500000 0.037500 0.325000 0.225000 0.287500 0.162500 0.162500 0.362500 0.200000 0.275000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYBAGTGGKTWRAGBSNB MEME-2 regular expression -------------------------------------------------------------------------------- T[GA]G[CT][CT][TCG]AGT[GT]G[TG]T[AT][AG]AG[CGT][GC][AGC][CTG] -------------------------------------------------------------------------------- Time 565.46 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGAKRTRAWASCCGTYMYWCYATAKCKGA MEME-3 width = 30 sites = 11 llr = 344 E-value = 2.0e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGAKRTRAWASCCGTYMYWCYATAKCKGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4::a:4:4a4a::::::6:6::6:a::::a pos.-specific C ::::::2::::4aa::446:a432::a::: probability G 6:a:46:6:::6::a1:::::::::4:6a: matrix T :a::6:8::6:::::96:44:618:6:4:: bits 2.4 * *** * * * 2.2 * *** * * * 1.9 * *** * * * 1.7 *** * * *** * * * ** Relative 1.4 *** * ***** * * * ** Entropy 1.2 **** **** ****** * * ** **** (45.1 bits) 1.0 ********* ********* ** ******* 0.7 ****************************** 0.5 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel GTGATGTGATAGCCGTTACACTATATCGGA consensus A GA A A C CCTT CC G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGAKRTRAWASCCGTYMYWCYATAKCKGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:210020-210440 + 54 9.35e-19 CGGTGAAAGC GTGATGTGATAGCCGTTACACTATATCGGA CAATAATTGG chrXIII:290505-291124 - 37 9.35e-19 CGGTGAAAGC GTGATGTGATAGCCGTTACACTATATCGGA TTATATTTCA chrX:115751-116200 + 56 9.35e-19 CGGTGAAAGC GTGATGTGATAGCCGTTACACTATATCGGA TTATAAACGG chrIX:370265-370591 - 39 9.35e-19 CGGTGAAAGC GTGATGTGATAGCCGTTACACTATATCGGA TTATAATCTA chrII:644958-645365 - 56 9.35e-19 CGGTGAAAGC GTGATGTGATAGCCGTTACACTATATCGGA TAATAACTTA chrIX:197444-197743 - 49 6.71e-17 CGGTGAGAAC GTGATGTGATAGCCGTTACACTACATCGGA TTTGATTAGC chrIV:1016974-1017492 + 66 6.71e-17 CGGTGAGAAC GTGATGTGATAGCCGTTACACTACATCGGA TTGTA chrVII:319235-320116 - 12 8.20e-14 AACGAACAAC ATGAGATAAAACCCGTCCTTCCCTAGCTGA ATTACCAAAA chrIV:945820-946598 - 11 9.96e-14 AACGAACAAC ATGAGACAAAACCCGTCCTTCCCTAGCTGA ACTACCCAAA chrV:249803-250539 - 24 1.16e-13 AACGAACAAC ATGAGATAAAACCCGGCCTTCCCTAGCTGA ACTACCCAAA chrXV:854060-854755 + 15 1.53e-13 AGCGAACAAC ATGAGACAAAACCCGTCCTTCCTTAGCTGA ACTACCCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGAKRTRAWASCCGTYMYWCYATAKCKGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:210020-210440 9.4e-19 53_[+3]_17 chrXIII:290505-291124 9.4e-19 36_[-3]_34 chrX:115751-116200 9.4e-19 55_[+3]_15 chrIX:370265-370591 9.4e-19 38_[-3]_32 chrII:644958-645365 9.4e-19 55_[-3]_15 chrIX:197444-197743 6.7e-17 48_[-3]_22 chrIV:1016974-1017492 6.7e-17 65_[+3]_5 chrVII:319235-320116 8.2e-14 11_[-3]_59 chrIV:945820-946598 1e-13 10_[-3]_60 chrV:249803-250539 1.2e-13 23_[-3]_47 chrXV:854060-854755 1.5e-13 14_[+3]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGAKRTRAWASCCGTYMYWCYATAKCKGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGAKRTRAWASCCGTYMYWCYATAKCKGA width=30 seqs=11 chrXVI:210020-210440 ( 54) GTGATGTGATAGCCGTTACACTATATCGGA 1 chrXIII:290505-291124 ( 37) GTGATGTGATAGCCGTTACACTATATCGGA 1 chrX:115751-116200 ( 56) GTGATGTGATAGCCGTTACACTATATCGGA 1 chrIX:370265-370591 ( 39) GTGATGTGATAGCCGTTACACTATATCGGA 1 chrII:644958-645365 ( 56) GTGATGTGATAGCCGTTACACTATATCGGA 1 chrIX:197444-197743 ( 49) GTGATGTGATAGCCGTTACACTACATCGGA 1 chrIV:1016974-1017492 ( 66) GTGATGTGATAGCCGTTACACTACATCGGA 1 chrVII:319235-320116 ( 12) ATGAGATAAAACCCGTCCTTCCCTAGCTGA 1 chrIV:945820-946598 ( 11) ATGAGACAAAACCCGTCCTTCCCTAGCTGA 1 chrV:249803-250539 ( 24) ATGAGATAAAACCCGGCCTTCCCTAGCTGA 1 chrXV:854060-854755 ( 15) ATGAGACAAAACCCGTCCTTCCTTAGCTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGAKRTRAWASCCGTYMYWCYATAKCKGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 39121 bayes= 10.4576 E= 2.0e-047 23 -1010 175 -1010 -1010 -1010 -1010 169 -1010 -1010 240 -1010 169 -1010 -1010 -1010 -1010 -1010 94 103 23 -1010 175 -1010 -1010 -6 -1010 140 23 -1010 175 -1010 169 -1010 -1010 -1010 23 -1010 -1010 103 169 -1010 -1010 -1010 -1010 94 175 -1010 -1010 240 -1010 -1010 -1010 240 -1010 -1010 -1010 -1010 240 -1010 -1010 -1010 -106 155 -1010 94 -1010 103 103 94 -1010 -1010 -1010 175 -1010 23 103 -1010 -1010 23 -1010 240 -1010 -1010 -1010 94 -1010 103 103 53 -1010 -177 -1010 -6 -1010 140 169 -1010 -1010 -1010 -1010 -1010 94 103 -1010 240 -1010 -1010 -1010 -1010 175 23 -1010 -1010 240 -1010 169 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGAKRTRAWASCCGTYMYWCYATAKCKGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 11 E= 2.0e-047 0.363636 0.000000 0.636364 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.363636 0.636364 0.363636 0.000000 0.636364 0.000000 0.000000 0.181818 0.000000 0.818182 0.363636 0.000000 0.636364 0.000000 1.000000 0.000000 0.000000 0.000000 0.363636 0.000000 0.000000 0.636364 1.000000 0.000000 0.000000 0.000000 0.000000 0.363636 0.636364 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.090909 0.909091 0.000000 0.363636 0.000000 0.636364 0.636364 0.363636 0.000000 0.000000 0.000000 0.636364 0.000000 0.363636 0.636364 0.000000 0.000000 0.363636 0.000000 1.000000 0.000000 0.000000 0.000000 0.363636 0.000000 0.636364 0.636364 0.272727 0.000000 0.090909 0.000000 0.181818 0.000000 0.818182 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.363636 0.636364 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.636364 0.363636 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGAKRTRAWASCCGTYMYWCYATAKCKGA MEME-3 regular expression -------------------------------------------------------------------------------- [GA]TGA[TG][GA]T[GA]A[TA]A[GC]CCGT[TC][AC][CT][AT]C[TC][AC]TA[TG]C[GT]GA -------------------------------------------------------------------------------- Time 827.23 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:81868-82273 5.74e-02 100 chrI:138953-139335 2.67e-04 64_[+2(2.04e-07)]_15 chrI:166173-166946 9.96e-01 100 chrI:202401-202793 4.08e-01 100 chrII:9464-9956 7.86e-01 100 chrII:36246-36548 1.55e-05 57_[+2(1.93e-08)]_22 chrII:44988-45317 6.29e-01 100 chrII:59978-61588 6.08e-01 100 chrII:81152-84077 3.59e-01 100 chrII:88935-90157 3.22e-01 100 chrII:135967-136280 4.07e-02 100 chrII:165098-165764 1.64e-02 100 chrII:167926-168165 9.80e-02 100 chrII:181301-181661 9.08e-01 100 chrII:191969-192990 7.18e-01 100 chrII:197304-197872 6.38e-01 100 chrII:226972-227350 5.29e-04 8_[-1(1.09e-07)]_63 chrII:266208-266882 5.18e-01 100 chrII:326628-327078 1.79e-04 34_[-2(1.08e-06)]_45 chrII:332313-332999 7.87e-02 100 chrII:347424-347914 2.55e-04 30_[-1(3.44e-08)]_41 chrII:350617-351053 7.74e-03 48_[+2(1.13e-05)]_31 chrII:392999-394892 4.66e-01 100 chrII:405677-406354 5.97e-09 1_[+2(1.92e-06)]_7_[-1(6.20e-10)]_\ 42 chrII:408593-410768 7.45e-01 100 chrII:413729-415298 5.63e-01 100 chrII:415509-415914 9.42e-01 100 chrII:477051-477804 5.52e-02 100 chrII:553569-554232 9.79e-01 100 chrII:592883-593235 8.99e-01 100 chrII:604048-607117 4.31e-01 100 chrII:644958-645365 2.45e-14 55_[-3(9.35e-19)]_15 chrIII:201-1658 4.31e-02 52_[-3(3.13e-05)]_18 chrIII:1852-2056 8.01e-01 100 chrIII:71142-73258 1.47e-01 100 chrIII:90793-91061 1.59e-01 100 chrIII:123496-123786 3.84e-03 29_[-2(3.03e-06)]_50 chrIII:127485-127858 5.31e-01 100 chrIII:142675-143011 2.91e-01 100 chrIII:149722-150200 1.11e-03 43_[-1(2.35e-07)]_28 chrIII:150937-151527 8.67e-01 100 chrIII:162529-163317 4.83e-01 100 chrIII:163482-163886 3.51e-03 78_[-2(7.39e-06)]_1 chrIII:167865-168569 5.41e-01 100 chrIII:178345-178686 2.51e-01 100 chrIII:227756-228215 6.33e-10 13_[+2(4.28e-10)]_36_[-1(1.88e-07)]_\ 1 chrIII:228791-230768 8.55e-01 100 chrIII:266787-267844 8.15e-01 100 chrIII:295337-295903 7.13e-02 100 chrIII:308612-308955 1.71e-01 100 chrIV:83322-83794 2.58e-04 46_[+2(3.01e-07)]_33 chrIV:117181-118204 5.60e-02 100 chrIV:128970-131509 5.49e-01 100 chrIV:210015-210620 1.74e-03 53_[-1(1.61e-05)]_18 chrIV:221605-222348 3.07e-01 100 chrIV:234157-234625 1.35e-02 100 chrIV:306686-307850 4.71e-03 2_[-1(3.81e-05)]_69 chrIV:308041-309408 8.72e-01 100 chrIV:321633-321923 6.23e-01 100 chrIV:331232-332571 5.99e-02 100 chrIV:340966-341914 6.93e-01 100 chrIV:357953-358582 8.57e-01 100 chrIV:359153-359778 1.19e-01 100 chrIV:410234-410440 5.96e-01 100 chrIV:411283-411598 3.63e-01 100 chrIV:434111-435124 1.97e-01 100 chrIV:437558-437969 3.01e-05 65_[+2(1.74e-09)]_14 chrIV:465190-466072 5.63e-01 100 chrIV:488338-488977 9.84e-01 100 chrIV:489654-491208 4.86e-01 100 chrIV:519654-519905 3.04e-11 20_[+2(4.28e-10)]_19_[-1(3.44e-08)]_\ 11 chrIV:520373-521105 7.35e-02 69_[-3(8.11e-05)]_1 chrIV:538839-539465 9.16e-02 100 chrIV:541264-541863 9.82e-01 100 chrIV:542880-543957 3.03e-01 100 chrIV:555836-556406 4.91e-01 100 chrIV:568485-569286 1.40e-01 100 chrIV:578873-580679 9.21e-01 100 chrIV:599630-600182 8.45e-01 100 chrIV:601184-601545 1.07e-01 100 chrIV:619587-620232 6.44e-01 100 chrIV:667756-668560 8.17e-01 100 chrIV:757465-758384 3.64e-01 100 chrIV:802604-802836 7.59e-08 68_[+1(2.47e-11)]_3 chrIV:884292-884571 3.55e-01 100 chrIV:945820-946598 1.18e-09 10_[-3(9.96e-14)]_60 chrIV:976092-976752 4.03e-01 100 chrIV:992677-993403 5.70e-01 100 chrIV:1013436-1013900 3.24e-01 100 chrIV:1016974-1017492 2.01e-22 31_[+1(2.14e-13)]_5_[+3(6.71e-17)]_\ 5 chrIV:1075322-1075733 2.52e-09 2_[+1(9.97e-11)]_69 chrIV:1094979-1095631 6.99e-01 100 chrIV:1150703-1151160 2.29e-06 32_[-2(6.61e-10)]_47 chrIV:1161466-1161889 8.62e-01 100 chrIV:1175593-1176052 2.34e-04 63_[+2(3.63e-07)]_16 chrIV:1201535-1201916 9.64e-01 100 chrIV:1236452-1237980 2.82e-01 100 chrIV:1300413-1301320 8.04e-01 100 chrIV:1305387-1306170 7.30e-01 100 chrIV:1344958-1345562 4.19e-01 100 chrIV:1352361-1353054 9.62e-01 100 chrIV:1354414-1355554 5.16e-01 100 chrIV:1355738-1355980 9.65e-01 100 chrIV:1359432-1360826 3.40e-01 100 chrIV:1401290-1401883 5.51e-01 100 chrIV:1402767-1403595 9.05e-01 100 chrIV:1449716-1451651 9.45e-01 100 chrIV:1461177-1461834 5.37e-01 100 chrIV:1489340-1490361 5.12e-01 100 chrIX:67532-69565 4.69e-02 9_[-3(8.72e-05)]_61 chrIX:99674-100034 8.07e-01 100 chrIX:129358-130171 5.59e-01 100 chrIX:138328-139225 9.81e-01 100 chrIX:140796-141937 2.14e-02 100 chrIX:174635-175196 9.95e-01 100 chrIX:177648-178033 6.30e-01 100 chrIX:183312-183986 5.13e-01 100 chrIX:190625-192927 3.73e-01 100 chrIX:197444-197743 1.60e-12 48_[-3(6.71e-17)]_22 chrIX:210674-211022 8.20e-01 100 chrIX:211197-211401 2.70e-02 22_[+2(3.49e-05)]_57 chrIX:248665-249367 7.08e-02 100 chrIX:254267-254514 4.54e-01 100 chrIX:257387-258126 2.69e-01 100 chrIX:299968-300498 3.48e-07 52_[+1(5.81e-11)]_19 chrIX:315409-316561 6.45e-01 100 chrIX:316741-317617 8.79e-02 100 chrIX:321384-324927 4.91e-01 100 chrIX:325403-326059 1.78e-05 73_[+2(2.97e-09)]_6 chrIX:336106-336670 3.83e-09 18_[+1(6.20e-10)]_7_[-2(1.92e-06)]_\ 25 chrIX:370265-370591 1.61e-14 38_[-3(9.35e-19)]_32 chrIX:380283-380892 7.36e-01 100 chrIX:381088-381283 9.57e-01 100 chrIX:386225-386970 6.29e-01 100 chrIX:388173-389095 2.38e-01 100 chrIX:390226-390884 6.96e-01 100 chrIX:393897-395583 9.06e-01 100 chrIX:426579-428080 9.97e-01 100 chrV:23348-24026 7.64e-01 100 chrV:51831-52347 7.82e-01 100 chrV:53543-53974 6.58e-01 100 chrV:61094-62116 6.09e-01 100 chrV:77542-79421 4.01e-01 100 chrV:85161-86255 5.95e-01 100 chrV:86456-86787 2.64e-05 39_[+2(1.74e-09)]_40 chrV:99910-100273 5.38e-01 100 chrV:117684-118276 7.00e-01 100 chrV:131000-131385 2.46e-01 100 chrV:135079-136075 9.73e-01 100 chrV:138488-139981 4.59e-01 100 chrV:140196-140850 6.31e-01 100 chrV:141036-141392 6.05e-01 100 chrV:152229-152859 6.50e-01 100 chrV:176920-177392 1.31e-09 27_[-1(2.14e-13)]_44 chrV:249803-250539 2.31e-10 23_[-3(1.16e-13)]_47 chrV:288127-288857 1.52e-10 8_[+1(1.88e-07)]_17_[-2(1.09e-10)]_\ 25 chrV:305822-306918 8.04e-02 21_[-3(9.29e-05)]_49 chrV:311814-312330 2.43e-11 8_[+1(1.89e-10)]_8_[-2(1.45e-08)]_\ 34 chrV:354807-355548 8.72e-01 100 chrV:355719-355934 5.48e-01 100 chrV:377942-379329 5.65e-01 100 chrV:396138-396557 6.87e-01 100 chrV:423084-424358 3.61e-01 100 chrV:431049-432020 1.76e-01 22_[+3(9.90e-05)]_48 chrV:434422-435137 4.35e-01 100 chrV:435306-435927 1.08e-01 100 chrV:438493-438922 2.18e-04 49_[+2(7.76e-08)]_30 chrV:441608-442650 2.92e-01 100 chrV:443136-443335 5.04e-14 24_[+1(1.83e-11)]_9_[-2(2.17e-10)]_\ 17 chrV:461909-462156 3.44e-01 100 chrV:469176-470447 9.64e-03 69_[-3(1.60e-06)]_1 chrV:485634-487695 3.83e-01 100 chrV:491080-491944 2.81e-01 100 chrV:551003-551607 5.40e-14 37_[+1(1.83e-11)]_9_[-2(2.17e-10)]_\ 4 chrVI:4566-4753 7.44e-01 100 chrVI:31171-31462 6.30e-01 100 chrVI:64171-65345 7.76e-01 100 chrVI:82164-84455 6.17e-01 100 chrVI:95474-95808 1.74e-01 100 chrVI:101372-102138 1.61e-02 100 chrVI:131363-131591 9.43e-01 100 chrVI:137301-137748 7.58e-11 19_[+1(1.81e-09)]_9_[-2(4.98e-09)]_\ 22 chrVI:157905-158203 9.69e-01 100 chrVI:162050-162391 4.40e-04 64_[+2(3.01e-07)]_15 chrVI:167284-167653 3.87e-10 25_[+2(6.68e-07)]_24_[-1(1.67e-10)]_\ 1 chrVI:180624-181273 6.18e-01 100 chrVI:190948-191749 2.38e-01 100 chrVI:210437-211146 5.06e-01 100 chrVI:221764-222033 9.03e-01 100 chrVI:226513-226903 2.42e-10 37_[+1(5.81e-11)]_8_[-2(6.15e-07)]_\ 5 chrVII:730-2139 8.52e-01 100 chrVII:110173-110777 1.68e-01 100 chrVII:115036-115727 6.72e-01 100 chrVII:121878-122485 1.37e-01 100 chrVII:148293-149481 8.73e-01 100 chrVII:185410-185893 6.09e-01 100 chrVII:205151-205992 9.74e-05 6_[+2(9.32e-09)]_73 chrVII:254156-254739 4.41e-01 100 chrVII:277039-277368 1.44e-01 100 chrVII:287245-287902 4.59e-01 100 chrVII:310479-312848 7.20e-01 100 chrVII:319235-320116 1.06e-09 11_[-3(8.20e-14)]_59 chrVII:323509-324171 9.27e-01 100 chrVII:328392-329765 7.61e-01 100 chrVII:345910-346527 2.93e-01 100 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******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************