******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SRB8/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71749-73280 1.0000 100 chrI:81900-82315 1.0000 100 chrI:138931-139352 1.0000 100 chrI:141660-141896 1.0000 100 chrI:142136-143564 1.0000 100 chrI:166171-166595 1.0000 100 chrII:9462-10253 1.0000 100 chrII:36234-36671 1.0000 100 chrII:44790-45386 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chrIII:127460-127904 1.0000 100 chrIII:137757-138986 1.0000 100 chrIII:142286-143001 1.0000 100 chrIII:149722-150174 1.0000 100 chrIII:151118-151596 1.0000 100 chrIII:162539-163906 1.0000 100 chrIII:168102-168546 1.0000 100 chrIII:177038-178759 1.0000 100 chrIII:227737-228232 1.0000 100 chrIII:295341-295951 1.0000 100 chrIII:308587-308950 1.0000 100 chrIII:316239-316591 1.0000 100 chrIV:83337-83823 1.0000 100 chrIV:117147-118211 1.0000 100 chrIV:129880-131022 1.0000 100 chrIV:216754-218072 1.0000 100 chrIV:221064-222354 1.0000 100 chrIV:229456-230509 1.0000 100 chrIV:234301-234580 1.0000 100 chrIV:307996-309363 1.0000 100 chrIV:321464-321969 1.0000 100 chrIV:322206-323617 1.0000 100 chrIV:340563-341703 1.0000 100 chrIV:358059-358456 1.0000 100 chrIV:359362-359825 1.0000 100 chrIV:410209-410458 1.0000 100 chrIV:411220-411676 1.0000 100 chrIV:434033-435046 1.0000 100 chrIV:437549-438108 1.0000 100 chrIV:465098-470430 1.0000 100 chrIV:488432-488996 1.0000 100 chrIV:489895-492548 1.0000 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chrXV:619163-621277 1.0000 100 chrXV:639204-639468 1.0000 100 chrXV:662778-664088 1.0000 100 chrXV:677552-679168 1.0000 100 chrXV:710070-710741 1.0000 100 chrXV:779647-781017 1.0000 100 chrXV:796701-798770 1.0000 100 chrXV:854036-854766 1.0000 100 chrXV:866520-868003 1.0000 100 chrXV:881712-882386 1.0000 100 chrXV:882797-884089 1.0000 100 chrXV:900239-901635 1.0000 100 chrXV:968103-968562 1.0000 100 chrXV:976381-976700 1.0000 100 chrXV:978758-979176 1.0000 100 chrXV:979807-981333 1.0000 100 chrXV:1003941-1004974 1.0000 100 chrXV:1025682-1026190 1.0000 100 chrXV:1027835-1029520 1.0000 100 chrXV:1039109-1039422 1.0000 100 chrXVI:55859-56349 1.0000 100 chrXVI:66985-67266 1.0000 100 chrXVI:75126-76895 1.0000 100 chrXVI:172844-174099 1.0000 100 chrXVI:188376-188950 1.0000 100 chrXVI:193112-193932 1.0000 100 chrXVI:209312-210454 1.0000 100 chrXVI:279971-280214 1.0000 100 chrXVI:280620-282961 1.0000 100 chrXVI:302571-304321 1.0000 100 chrXVI:338732-339197 1.0000 100 chrXVI:350867-351932 1.0000 100 chrXVI:378662-379002 1.0000 100 chrXVI:404470-407760 1.0000 100 chrXVI:431860-434403 1.0000 100 chrXVI:435514-436185 1.0000 100 chrXVI:502841-503085 1.0000 100 chrXVI:519799-520532 1.0000 100 chrXVI:559966-560465 1.0000 100 chrXVI:571667-572529 1.0000 100 chrXVI:581840-582256 1.0000 100 chrXVI:622319-622852 1.0000 100 chrXVI:645417-646171 1.0000 100 chrXVI:678653-679354 1.0000 100 chrXVI:689367-689868 1.0000 100 chrXVI:699683-700700 1.0000 100 chrXVI:701885-702349 1.0000 100 chrXVI:731635-732332 1.0000 100 chrXVI:744049-744598 1.0000 100 chrXVI:769026-769482 1.0000 100 chrXVI:775608-776087 1.0000 100 chrXVI:794487-796143 1.0000 100 chrXVI:810577-811441 1.0000 100 chrXVI:819329-820452 1.0000 100 chrXVI:821656-822090 1.0000 100 chrXVI:856798-857121 1.0000 100 chrXVI:860129-860692 1.0000 100 chrXVI:866311-866695 1.0000 100 chrXVI:878849-880543 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SRB8/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SRB8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SRB8/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 544 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 54400 N= 544 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.299 C 0.201 G 0.201 T 0.299 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SRB8/background): A 0.306 C 0.194 G 0.194 T 0.306 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAAWYGCYCNMDMSSGGRATCGAAC MEME-1 width = 30 sites = 81 llr = 1503 E-value = 6.4e-296 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAAWYGCYCNMDMSSGGRATCGAAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 778888775112113333:12:65:::aa: pos.-specific C 111::::::5:54534:443:::1:8:::a probability G 11:1111:1:72122242367a42::a::: matrix T 2111:112342141213:2::::2a2:::: bits 2.4 * * 2.1 * * * 1.9 * * * 1.7 * * * ** Relative 1.4 * ****** Entropy 1.2 ** ****** (26.8 bits) 0.9 * * * **** ****** 0.7 **** * ** **** ****** 0.5 ******** *** * ******* ****** 0.2 ************** ******** ****** 0.0 ------------------------------ Multilevel AAAAAAAAACGCCCCCGCCGGGAATCGAAC consensus TTTTATGAAAAGCA GT sequence G TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAWYGCYCNMDMSSGGRATCGAAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrVII:930709-931156 + 62 4.13e-13 AAAAAAGAAA AGAAAAAAATGCGCAAGCCCGGAATCGAAC CGGGGGCCC chrX:396507-397023 + 2 5.88e-13 A AAAAAGAAATGCGCAAGCCCGGAATCGAAC CGGGGGCCCA chrIX:197352-198012 - 11 2.26e-12 AAAAAAGAAT AAAAAATAACTCCGAAGCGGGGAGTCGAAC CCCGGTCTCC chrIV:1016955-1017533 + 4 3.64e-12 ATA AAAAAGAAACTCCGAAGCGGGGAGTCGAAC CCCGGTCTCC chrX:355200-355779 - 68 4.25e-12 TTC AAAAAAAATCTCCGCGACGGGGAATTGAAC CCCGATCTGG chrX:204519-205029 - 62 4.25e-12 TCAAGGGCC AAAAAAAATCTCCGCGACGGGGAATTGAAC CCCGATCTGG chrV:443062-443340 + 42 4.25e-12 AAGATTTTCA AAAAAAATATGGTCTCTAGCGGGATCGAAC CGCTGATCCC chrXII:1051944-1052220 + 30 6.71e-12 CTTAAAGTAA AAAAAATAATGGTCTCTAGCGGGATCGAAC CGCTGATCCC chrXIV:569651-570058 + 54 7.80e-12 CCAATGCAAA AAAAAAGAATGGTCTCTAGCGGGATCGAAC CGCTGATCCC chrVII:401398-401618 + 60 7.80e-12 AAAAACTTTC AAAAAAATACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrXIII:290568-291127 - 55 9.04e-12 AATTTCTTCA AAAAGAAAACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrV:551032-551583 + 19 1.61e-11 TTACGATTTT CAAAAAAATTGGTCTCTAGCGGGATCGAAC CGCTGATCCC chrXIII:572373-573351 + 62 1.86e-11 AAAGTTTTGA AAAAAAATGTGCTCCAGGGGAGGTTCGAAC TCTCGACCT chrXII:426888-427494 - 42 2.46e-11 ATAGAAGCTT AAAAAAATTCTCCGCGACGGGGAATTGAAC CCCGATCTGG chrIV:568702-569338 - 45 2.46e-11 CTATCAATTA AAAAAAATTCTCCGCGACGGGGAATTGAAC CCCGATCTGG chrXIII:463436-463854 - 10 2.82e-11 CCTGGTCTGA TAAAAAAATCTCCGCGACGGGGAATTGAAC CCCGATCTG chrIX:336094-336639 + 24 2.82e-11 TCAGTTATGG TAAAAAAATCTCCGCGACGGGGAATTGAAC CCCGATCTGG chrIX:323991-324591 + 53 2.82e-11 GAATAAATGC TAAAAAAATCTCCGCGACGGGGAATTGAAC CCCGATCTGG chrXII:214684-215065 + 50 3.23e-11 AATAAAAGTA AAAAATAAATGGACGCAACCGGAATCGAAC CGATGACCTC chrII:405677-406352 - 47 3.70e-11 CAGGAGTAGC CAAAAAAATCTCCGCGACGGGGAATTGAAC CCCGATCTGG chrV:176882-177455 - 32 7.16e-11 TGTAGCCATC AAAAAAGTACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrVII:738736-739598 - 58 9.24e-11 TTGCATTCTA AAAAGTAAATGGTCTCTAGCGGGATCGAAC CGCTGATCCC chrVII:185455-185931 + 62 9.24e-11 ATTTGAGCCT AAAAAAGATAGCCCTGTAGGGGGCTCGAAC CCCTAACCT chrIV:1351906-1353077 + 16 9.24e-11 TGTTGTTTAA AAAAAAGATAGCCCTGTAGGGGGCTCGAAC CCCTAACCTT chrII:197263-197839 - 46 9.24e-11 TATTTGAATT GCAAAAAAATGGTCTCTAGCGGGATCGAAC CGCTGATCCC chrXVI:860129-860692 - 69 1.05e-10 AA AATAAAATCTGCGCAAGCCCGGAATCGAAC CGGGGGCCCA chrVII:736185-736652 - 23 1.05e-10 AAATTATTTA AAAAAACAACACTCACGATGGGGGTCGAAC CCATAATCTT chrVII:828441-828985 + 51 1.19e-10 ATTTTTATTG CAAAAAAAGCACTCACGATGGGGGTCGAAC CCATAATCTT chrVI:180682-181279 + 35 1.35e-10 TTATCCTTAA AAAAAGGACTGCGCAAGCCCGGAATCGAAC CGGGGGCCCA chrXII:167698-168251 + 11 2.19e-10 AAAGAAAAAG AAAAAATAACGACAACTGCAGGACTCGAAC CTGCGCGGGC chrIX:325526-326073 - 51 2.19e-10 TCTTTCAAAG AAAAAAAATTGCTTCCAATCGGATTTGAAC CGATGATCTC chrII:226975-227348 - 25 2.19e-10 ATTACTGTCC AAAAAATAACGACAACTGCAGGACTCGAAC CTGCGCGGGC chrXIV:632498-632871 - 18 2.47e-10 TCTGAAATAA GAAAAAAAACGACCCCAGTGAGGGTTGAAC TCACGATCTT chrVII:541711-542162 - 15 3.51e-10 AGAGGTAAGA AAAAGAACACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrIV:802573-802839 + 66 3.51e-10 TTAGAGTAAA AATAAAAAGAGGTCCTACCCGGATTCGAAC CGGGG chrVII:774128-774682 - 46 3.94e-10 CATTAAAAGT AAAAAAATTTGGACGAGTCCGGAATCGAAC CGGAGACCTC chrXIII:747691-748169 + 3 4.42e-10 AT ACTAAAAAACACTCACGATGGGGGTCGAAC CCATAATCTT chrX:422677-423266 - 68 4.42e-10 AAA AAGAAAATGTGCTCCAGGGGAGGTTCGAAC TCTCGACCTT chrX:197172-197523 + 7 4.42e-10 AGAACA AAAAGAAATTGGACGAGTCCGGAATCGAAC CGGAGACCTC chrXI:140766-141333 + 10 4.96e-10 TAAAAATAA TAATGAAAACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrX:414787-415267 - 41 6.94e-10 TGGGCAAGAA AAAAATATTAGCCCTGTAGGGGGCTCGAAC CCCTAACCTT chrVIII:134041-134689 - 57 6.94e-10 AGTTCATTTT AGCAAAAAAAGGTCCTACCCGGATTCGAAC CGGGGTTGTC chrIX:248481-249412 - 15 6.94e-10 AAAAAAAATA AAAAAATAACGACACCAGCAGGATTTGAAC CAGCGCGGGC chrIV:520700-521444 - 1 6.94e-10 GAGGGTTAAA AAATAGAAAAGGTCCTACCCGGATTCGAAC chrXIII:586350-586905 + 50 8.64e-10 CGGGATGTCT TCAAAAAAATGATTTCGCCCAGGATCGAAC TGGGGACGTT chrXIV:96028-96459 + 39 9.63e-10 GCAATGCCAT CAAAAAATTTGAGCGGTACGAGAATCGAAC CCGTGTCCCC chrIV:83337-83823 - 68 9.63e-10 AAA AATTAAACTTGCGCAAGCCCGGAATCGAAC CGGGGGCCCA chrXII:374190-374674 - 25 1.33e-09 ATTGTCGGAG CAAAAAAATCTTCCCCGCCAGGACTTGAAC CTGGAATCTT chrXIII:420329-420857 + 36 1.48e-09 GTAACGGCTG AGATAAAAATGATTTCGCCCAGGATCGAAC TGGGGACGTT chrXIII:372192-372773 + 4 1.64e-09 GTG CTAAAAAAATGATTTCGCCCAGGATCGAAC TGGGGACGTT chrXI:162202-162741 + 57 1.82e-09 TGACTGCTGG TGTAAAAAACACTCACGATGGGGGTCGAAC CCATAATCTT chrVII:730930-731417 - 67 1.82e-09 TTCA AGCAAAAAACGACCCCAGTGAGGGTTGAAC TCACGATCTT chrXIII:131520-132132 + 40 2.47e-09 CAAAAAAGAA GAAACAAAGCACTCACGATGGGGGTCGAAC CCATAATCTT chrX:374208-374832 + 27 2.47e-09 TATCACGGAA GAAACAAAGCACTCACGATGGGGGTCGAAC CCATAATCTT chrXII:732009-732325 - 53 3.02e-09 GAGAAAAAGC AAAAAATAATGAGAGCTAAGGGATTCGAAC CCTTGCATCC chrXII:592314-592719 + 44 3.02e-09 GGCAAAAAAC AAAAAATAATGAGAGCTAAGGGATTCGAAC CCTTGCATCC chrXVI:744049-744598 - 62 3.68e-09 ACTTTAGGG AAAAAATTTTGCCACCTGTCAGAATTGAAC TAACGACCTT chrIII:168102-168546 + 18 4.06e-09 TAAATCTGTA TTCAAAAAAAGGTCCTACCCGGATTCGAAC CGGGGTTGTC chrXI:578736-579335 - 55 4.47e-09 AATCTAAAAA AGTAAAGAACTCCTCATAGGGGGCTCGAAC CCCTGACATT chrIV:884293-884629 - 62 4.47e-09 TGAAAAAAA AAGAGAAAGTGCTCGAGGTGGGGTTTGAAC CCACGACGGT chrXVI:856798-857121 - 45 5.96e-09 CCATAATCAA AAATTAAAATGGACGAGTCCGGAATCGAAC CGGAGACCTC chrXV:274457-275020 - 65 6.55e-09 CACAAA AAAGAAATGCGTCACAGACAGGATTCGAAC CTGCGCAGGT chrX:538523-538763 - 13 6.55e-09 AAAAAAAAAA AATAATCAACGTTCCGTACGGGACTCGAAC CCGCAGTCTT chrVI:191275-191757 + 38 6.55e-09 AAAATTTAAA AAAGAAATGCGTCACAGACAGGATTCGAAC CTGCGCAGGT chrXVI:689367-689868 - 59 7.19e-09 ATAATTTCAA AAAATAATACGACACCAGCAGGATTTGAAC CAGCGCGGGC chrIV:437549-438108 - 55 7.89e-09 ATTGGGAATA TAAAAATGACGACAACTGCAGGACTCGAAC CTGCGCGGGC chrIII:90783-91114 - 54 7.89e-09 ATGTTGAGGA AAAAAATAATGGTTGCTAAGAGATTCGAAC TCTTGCATCT chrVII:823347-823706 - 59 9.49e-09 TAATGTAATC TTCAAAAAATGATTTCGCCCAGGATCGAAC TGGGGACGTT chrV:469198-469876 - 23 9.49e-09 GCTTGGCATA TTTAAAAAATGATTTCGCCCAGGATCGAAC TGGGGACGTT chrII:36234-36671 - 66 2.95e-08 CTAGC AAAAAGGAATGCGAATTCTGTGGATCGAAC ACAGGACCTC chrXIV:631685-632015 + 37 3.20e-08 TGATAAAAAT AAATCAATGGGGGCGAGCCGGGACTCGAAC CCGGGACCTC chrXVI:559966-560465 + 24 3.48e-08 AAAAATACAA AAATAGAAATGCGAATTCTGTGGATCGAAC ACAGGACCTC chrVIII:475498-475910 + 43 6.09e-08 AAAAAAATCG ATGTTAAAATGTTCCAACCGAGGATCGAAC TCGGGACCTT chrX:354165-354536 - 12 1.12e-07 TTAGAGCACA TTAAAAAAATCTCCCGGGGGCGAGTCGAAC GCCCGATCTC chrV:311728-312292 + 54 2.13e-07 TGGTACAAAA AGATTTCATTGGACGCAACCGGAATCGAAC CGATGACCTC chrIV:519658-519975 - 40 2.99e-07 GAGGAAAAAA ATAAGTTATTGAAGGATGCGAGGTTCGAAC TCGCGCGGAC chrII:347383-347953 - 48 2.99e-07 TATATTAAAA AAATATTACTGAAGGATGCGAGGTTCGAAC TCGCGCGGAC chrVI:101366-102241 + 47 6.87e-07 AATGTGAGCC CCCAAAATACGCTCGGTCTTGGAATCGATC AAAATCTTCA chrXIII:195934-196306 + 54 1.10e-06 TCCTGTTTAA TCAGGAAGTCGCCCAAAGCGAGAATCATAC CACTAGACCA chrXII:92407-92724 - 50 1.10e-06 TCCTGTTTAG TCAGGAAGTCGCCCAAAGCGAGAATCATAC CACTAGACCA chrVIII:388664-389208 + 63 1.47e-06 TCCTGTTTAG GCAGGAAGTCGCCCAAAGCGAGAATCATAC CACTAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAWYGCYCNMDMSSGGRATCGAAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:930709-931156 4.1e-13 61_[+1]_9 chrX:396507-397023 5.9e-13 1_[+1]_69 chrIX:197352-198012 2.3e-12 10_[-1]_60 chrIV:1016955-1017533 3.6e-12 3_[+1]_67 chrX:355200-355779 4.3e-12 67_[-1]_3 chrX:204519-205029 4.3e-12 61_[-1]_9 chrV:443062-443340 4.3e-12 41_[+1]_29 chrXII:1051944-1052220 6.7e-12 29_[+1]_41 chrXIV:569651-570058 7.8e-12 53_[+1]_17 chrVII:401398-401618 7.8e-12 59_[+1]_11 chrXIII:290568-291127 9e-12 54_[-1]_16 chrV:551032-551583 1.6e-11 18_[+1]_52 chrXIII:572373-573351 1.9e-11 61_[+1]_9 chrXII:426888-427494 2.5e-11 41_[-1]_29 chrIV:568702-569338 2.5e-11 44_[-1]_26 chrXIII:463436-463854 2.8e-11 9_[-1]_61 chrIX:336094-336639 2.8e-11 23_[+1]_47 chrIX:323991-324591 2.8e-11 52_[+1]_18 chrXII:214684-215065 3.2e-11 49_[+1]_21 chrII:405677-406352 3.7e-11 46_[-1]_24 chrV:176882-177455 7.2e-11 31_[-1]_39 chrVII:738736-739598 9.2e-11 57_[-1]_13 chrVII:185455-185931 9.2e-11 61_[+1]_9 chrIV:1351906-1353077 9.2e-11 15_[+1]_55 chrII:197263-197839 9.2e-11 45_[-1]_25 chrXVI:860129-860692 1e-10 68_[-1]_2 chrVII:736185-736652 1e-10 22_[-1]_48 chrVII:828441-828985 1.2e-10 50_[+1]_20 chrVI:180682-181279 1.3e-10 34_[+1]_36 chrXII:167698-168251 2.2e-10 10_[+1]_60 chrIX:325526-326073 2.2e-10 50_[-1]_20 chrII:226975-227348 2.2e-10 24_[-1]_46 chrXIV:632498-632871 2.5e-10 17_[-1]_53 chrVII:541711-542162 3.5e-10 14_[-1]_56 chrIV:802573-802839 3.5e-10 65_[+1]_5 chrVII:774128-774682 3.9e-10 45_[-1]_25 chrXIII:747691-748169 4.4e-10 2_[+1]_68 chrX:422677-423266 4.4e-10 67_[-1]_3 chrX:197172-197523 4.4e-10 6_[+1]_64 chrXI:140766-141333 5e-10 9_[+1]_61 chrX:414787-415267 6.9e-10 40_[-1]_30 chrVIII:134041-134689 6.9e-10 56_[-1]_14 chrIX:248481-249412 6.9e-10 14_[-1]_56 chrIV:520700-521444 6.9e-10 [-1]_70 chrXIII:586350-586905 8.6e-10 49_[+1]_21 chrXIV:96028-96459 9.6e-10 38_[+1]_32 chrIV:83337-83823 9.6e-10 67_[-1]_3 chrXII:374190-374674 1.3e-09 24_[-1]_46 chrXIII:420329-420857 1.5e-09 35_[+1]_35 chrXIII:372192-372773 1.6e-09 3_[+1]_67 chrXI:162202-162741 1.8e-09 56_[+1]_14 chrVII:730930-731417 1.8e-09 66_[-1]_4 chrXIII:131520-132132 2.5e-09 39_[+1]_31 chrX:374208-374832 2.5e-09 26_[+1]_44 chrXII:732009-732325 3e-09 52_[-1]_18 chrXII:592314-592719 3e-09 43_[+1]_27 chrXVI:744049-744598 3.7e-09 61_[-1]_9 chrIII:168102-168546 4.1e-09 17_[+1]_53 chrXI:578736-579335 4.5e-09 54_[-1]_16 chrIV:884293-884629 4.5e-09 61_[-1]_9 chrXVI:856798-857121 6e-09 44_[-1]_26 chrXV:274457-275020 6.5e-09 64_[-1]_6 chrX:538523-538763 6.5e-09 12_[-1]_58 chrVI:191275-191757 6.5e-09 37_[+1]_33 chrXVI:689367-689868 7.2e-09 58_[-1]_12 chrIV:437549-438108 7.9e-09 54_[-1]_16 chrIII:90783-91114 7.9e-09 53_[-1]_17 chrVII:823347-823706 9.5e-09 58_[-1]_12 chrV:469198-469876 9.5e-09 22_[-1]_48 chrII:36234-36671 2.9e-08 65_[-1]_5 chrXIV:631685-632015 3.2e-08 36_[+1]_34 chrXVI:559966-560465 3.5e-08 23_[+1]_47 chrVIII:475498-475910 6.1e-08 42_[+1]_28 chrX:354165-354536 1.1e-07 11_[-1]_59 chrV:311728-312292 2.1e-07 53_[+1]_17 chrIV:519658-519975 3e-07 39_[-1]_31 chrII:347383-347953 3e-07 47_[-1]_23 chrVI:101366-102241 6.9e-07 46_[+1]_24 chrXIII:195934-196306 1.1e-06 53_[+1]_17 chrXII:92407-92724 1.1e-06 49_[-1]_21 chrVIII:388664-389208 1.5e-06 62_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAWYGCYCNMDMSSGGRATCGAAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAAWYGCYCNMDMSSGGRATCGAAC width=30 seqs=81 chrVII:930709-931156 ( 62) AGAAAAAAATGCGCAAGCCCGGAATCGAAC 1 chrX:396507-397023 ( 2) AAAAAGAAATGCGCAAGCCCGGAATCGAAC 1 chrIX:197352-198012 ( 11) AAAAAATAACTCCGAAGCGGGGAGTCGAAC 1 chrIV:1016955-1017533 ( 4) AAAAAGAAACTCCGAAGCGGGGAGTCGAAC 1 chrX:355200-355779 ( 68) AAAAAAAATCTCCGCGACGGGGAATTGAAC 1 chrX:204519-205029 ( 62) AAAAAAAATCTCCGCGACGGGGAATTGAAC 1 chrV:443062-443340 ( 42) AAAAAAATATGGTCTCTAGCGGGATCGAAC 1 chrXII:1051944-1052220 ( 30) AAAAAATAATGGTCTCTAGCGGGATCGAAC 1 chrXIV:569651-570058 ( 54) AAAAAAGAATGGTCTCTAGCGGGATCGAAC 1 chrVII:401398-401618 ( 60) AAAAAAATACTCCGATACGGGGAGTCGAAC 1 chrXIII:290568-291127 ( 55) AAAAGAAAACTCCGATACGGGGAGTCGAAC 1 chrV:551032-551583 ( 19) CAAAAAAATTGGTCTCTAGCGGGATCGAAC 1 chrXIII:572373-573351 ( 62) AAAAAAATGTGCTCCAGGGGAGGTTCGAAC 1 chrXII:426888-427494 ( 42) AAAAAAATTCTCCGCGACGGGGAATTGAAC 1 chrIV:568702-569338 ( 45) AAAAAAATTCTCCGCGACGGGGAATTGAAC 1 chrXIII:463436-463854 ( 10) TAAAAAAATCTCCGCGACGGGGAATTGAAC 1 chrIX:336094-336639 ( 24) TAAAAAAATCTCCGCGACGGGGAATTGAAC 1 chrIX:323991-324591 ( 53) TAAAAAAATCTCCGCGACGGGGAATTGAAC 1 chrXII:214684-215065 ( 50) AAAAATAAATGGACGCAACCGGAATCGAAC 1 chrII:405677-406352 ( 47) CAAAAAAATCTCCGCGACGGGGAATTGAAC 1 chrV:176882-177455 ( 32) AAAAAAGTACTCCGATACGGGGAGTCGAAC 1 chrVII:738736-739598 ( 58) AAAAGTAAATGGTCTCTAGCGGGATCGAAC 1 chrVII:185455-185931 ( 62) AAAAAAGATAGCCCTGTAGGGGGCTCGAAC 1 chrIV:1351906-1353077 ( 16) AAAAAAGATAGCCCTGTAGGGGGCTCGAAC 1 chrII:197263-197839 ( 46) GCAAAAAAATGGTCTCTAGCGGGATCGAAC 1 chrXVI:860129-860692 ( 69) AATAAAATCTGCGCAAGCCCGGAATCGAAC 1 chrVII:736185-736652 ( 23) AAAAAACAACACTCACGATGGGGGTCGAAC 1 chrVII:828441-828985 ( 51) CAAAAAAAGCACTCACGATGGGGGTCGAAC 1 chrVI:180682-181279 ( 35) AAAAAGGACTGCGCAAGCCCGGAATCGAAC 1 chrXII:167698-168251 ( 11) AAAAAATAACGACAACTGCAGGACTCGAAC 1 chrIX:325526-326073 ( 51) AAAAAAAATTGCTTCCAATCGGATTTGAAC 1 chrII:226975-227348 ( 25) AAAAAATAACGACAACTGCAGGACTCGAAC 1 chrXIV:632498-632871 ( 18) GAAAAAAAACGACCCCAGTGAGGGTTGAAC 1 chrVII:541711-542162 ( 15) AAAAGAACACTCCGATACGGGGAGTCGAAC 1 chrIV:802573-802839 ( 66) AATAAAAAGAGGTCCTACCCGGATTCGAAC 1 chrVII:774128-774682 ( 46) AAAAAAATTTGGACGAGTCCGGAATCGAAC 1 chrXIII:747691-748169 ( 3) ACTAAAAAACACTCACGATGGGGGTCGAAC 1 chrX:422677-423266 ( 68) AAGAAAATGTGCTCCAGGGGAGGTTCGAAC 1 chrX:197172-197523 ( 7) AAAAGAAATTGGACGAGTCCGGAATCGAAC 1 chrXI:140766-141333 ( 10) TAATGAAAACTCCGATACGGGGAGTCGAAC 1 chrX:414787-415267 ( 41) AAAAATATTAGCCCTGTAGGGGGCTCGAAC 1 chrVIII:134041-134689 ( 57) AGCAAAAAAAGGTCCTACCCGGATTCGAAC 1 chrIX:248481-249412 ( 15) AAAAAATAACGACACCAGCAGGATTTGAAC 1 chrIV:520700-521444 ( 1) AAATAGAAAAGGTCCTACCCGGATTCGAAC 1 chrXIII:586350-586905 ( 50) TCAAAAAAATGATTTCGCCCAGGATCGAAC 1 chrXIV:96028-96459 ( 39) CAAAAAATTTGAGCGGTACGAGAATCGAAC 1 chrIV:83337-83823 ( 68) AATTAAACTTGCGCAAGCCCGGAATCGAAC 1 chrXII:374190-374674 ( 25) CAAAAAAATCTTCCCCGCCAGGACTTGAAC 1 chrXIII:420329-420857 ( 36) AGATAAAAATGATTTCGCCCAGGATCGAAC 1 chrXIII:372192-372773 ( 4) CTAAAAAAATGATTTCGCCCAGGATCGAAC 1 chrXI:162202-162741 ( 57) TGTAAAAAACACTCACGATGGGGGTCGAAC 1 chrVII:730930-731417 ( 67) AGCAAAAAACGACCCCAGTGAGGGTTGAAC 1 chrXIII:131520-132132 ( 40) GAAACAAAGCACTCACGATGGGGGTCGAAC 1 chrX:374208-374832 ( 27) GAAACAAAGCACTCACGATGGGGGTCGAAC 1 chrXII:732009-732325 ( 53) AAAAAATAATGAGAGCTAAGGGATTCGAAC 1 chrXII:592314-592719 ( 44) AAAAAATAATGAGAGCTAAGGGATTCGAAC 1 chrXVI:744049-744598 ( 62) AAAAAATTTTGCCACCTGTCAGAATTGAAC 1 chrIII:168102-168546 ( 18) TTCAAAAAAAGGTCCTACCCGGATTCGAAC 1 chrXI:578736-579335 ( 55) AGTAAAGAACTCCTCATAGGGGGCTCGAAC 1 chrIV:884293-884629 ( 62) AAGAGAAAGTGCTCGAGGTGGGGTTTGAAC 1 chrXVI:856798-857121 ( 45) AAATTAAAATGGACGAGTCCGGAATCGAAC 1 chrXV:274457-275020 ( 65) AAAGAAATGCGTCACAGACAGGATTCGAAC 1 chrX:538523-538763 ( 13) AATAATCAACGTTCCGTACGGGACTCGAAC 1 chrVI:191275-191757 ( 38) AAAGAAATGCGTCACAGACAGGATTCGAAC 1 chrXVI:689367-689868 ( 59) AAAATAATACGACACCAGCAGGATTTGAAC 1 chrIV:437549-438108 ( 55) TAAAAATGACGACAACTGCAGGACTCGAAC 1 chrIII:90783-91114 ( 54) AAAAAATAATGGTTGCTAAGAGATTCGAAC 1 chrVII:823347-823706 ( 59) TTCAAAAAATGATTTCGCCCAGGATCGAAC 1 chrV:469198-469876 ( 23) TTTAAAAAATGATTTCGCCCAGGATCGAAC 1 chrII:36234-36671 ( 66) AAAAAGGAATGCGAATTCTGTGGATCGAAC 1 chrXIV:631685-632015 ( 37) AAATCAATGGGGGCGAGCCGGGACTCGAAC 1 chrXVI:559966-560465 ( 24) AAATAGAAATGCGAATTCTGTGGATCGAAC 1 chrVIII:475498-475910 ( 43) ATGTTAAAATGTTCCAACCGAGGATCGAAC 1 chrX:354165-354536 ( 12) TTAAAAAAATCTCCCGGGGGCGAGTCGAAC 1 chrV:311728-312292 ( 54) AGATTTCATTGGACGCAACCGGAATCGAAC 1 chrIV:519658-519975 ( 40) ATAAGTTATTGAAGGATGCGAGGTTCGAAC 1 chrII:347383-347953 ( 48) AAATATTACTGAAGGATGCGAGGTTCGAAC 1 chrVI:101366-102241 ( 47) CCCAAAATACGCTCGGTCTTGGAATCGATC 1 chrXIII:195934-196306 ( 54) TCAGGAAGTCGCCCAAAGCGAGAATCATAC 1 chrXII:92407-92724 ( 50) TCAGGAAGTCGCCCAAAGCGAGAATCATAC 1 chrVIII:388664-389208 ( 63) GCAGGAAGTCGCCCAAAGCGAGAATCATAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAWYGCYCNMDMSSGGRATCGAAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 38624 bayes= 7.44103 E= 6.4e-296 118 -117 -165 -93 128 -117 -117 -182 139 -165 -239 -163 141 -1298 -165 -131 137 -239 -65 -263 146 -1298 -139 -182 125 -239 -117 -105 123 -297 -197 -54 83 -239 -65 -5 -182 124 -397 54 -205 -397 186 -54 -54 138 11 -205 -182 111 -51 23 -105 149 11 -163 7 78 -17 -82 -11 103 -7 -117 18 -1298 88 -5 7 116 11 -305 -305 120 83 -82 -163 78 152 -463 -46 -397 193 -363 -1298 -1298 237 -1298 101 -1298 98 -1298 62 -65 3 -54 -1298 -1298 -1298 171 -1298 205 -1298 -63 -305 -1298 231 -1298 165 -1298 -1298 -305 169 -1298 -1298 -463 -1298 237 -1298 -1298 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAWYGCYCNMDMSSGGRATCGAAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 81 E= 6.4e-296 0.691358 0.086420 0.061728 0.160494 0.740741 0.086420 0.086420 0.086420 0.802469 0.061728 0.037037 0.098765 0.814815 0.000000 0.061728 0.123457 0.790123 0.037037 0.123457 0.049383 0.839506 0.000000 0.074074 0.086420 0.728395 0.037037 0.086420 0.148148 0.716049 0.024691 0.049383 0.209877 0.543210 0.037037 0.123457 0.296296 0.086420 0.456790 0.012346 0.444444 0.074074 0.012346 0.703704 0.209877 0.209877 0.506173 0.209877 0.074074 0.086420 0.419753 0.135802 0.358025 0.148148 0.543210 0.209877 0.098765 0.320988 0.333333 0.172840 0.172840 0.283951 0.395062 0.185185 0.135802 0.345679 0.000000 0.358025 0.296296 0.320988 0.432099 0.209877 0.037037 0.037037 0.444444 0.345679 0.172840 0.098765 0.333333 0.555556 0.012346 0.222222 0.012346 0.740741 0.024691 0.000000 0.000000 1.000000 0.000000 0.617284 0.000000 0.382716 0.000000 0.469136 0.123457 0.197531 0.209877 0.000000 0.000000 0.000000 1.000000 0.000000 0.802469 0.000000 0.197531 0.037037 0.000000 0.962963 0.000000 0.962963 0.000000 0.000000 0.037037 0.987654 0.000000 0.000000 0.012346 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAWYGCYCNMDMSSGGRATCGAAC MEME-1 regular expression -------------------------------------------------------------------------------- AAAAAAA[AT][AT][CT][GT][CAG][CT][CG][CA][CA][GAT][CAG][CG][GC][GA]G[AG][AT]TCGAAC -------------------------------------------------------------------------------- Time 287.77 secs. ******************************************************************************** ******************************************************************************** MOTIF AWWWGSBYNBKTGGCBYAGTKGKTWRAGSS MEME-2 width = 30 sites = 65 llr = 1130 E-value = 1.0e-188 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWWWGSBYNBKTGGCBYAGTKGKTWRAGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 6445:::1212:3:::1a1::::26551:: pos.-specific C 1121:43333::::753::12::1::2154 probability G 212:9521224:7a:32:9:5a51132744 matrix T 1434:145334a::334::93:464111:1 bits 2.4 * * 2.1 * * 1.9 * * * * 1.7 * * * ** * Relative 1.4 * * ** *** * Entropy 1.2 * **** *** * * (25.1 bits) 0.9 * **** *** ** *** 0.7 ** ***** *** ** *** 0.5 * *** ****** ****** * *** 0.2 ** ***** ********************* 0.0 ------------------------------ Multilevel AAAAGGTTCTTTGGCCTAGTGGGTAAAGCC consensus TTT CCCTCG A TTC T TATGC GG sequence G GGA G C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWWWGSBYNBKTGGCBYAGTKGKTWRAGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrVII:738736-739598 + 1 2.83e-13 . AATAGGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXI:219680-220109 + 47 1.49e-12 ACTAACAGTA AATAGGGCGTGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrX:197172-197523 - 63 1.85e-12 TCAATAAT ATTAGGGCGTGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXII:656838-657220 - 2 3.45e-12 ACAACAAGAA AATTGGGCGTGTGGCGTAGTCGGTAGCGCG C chrXII:734573-735007 + 58 5.14e-12 ATTCAACAAA GTTTGGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:602078-602553 + 43 7.54e-12 AAACAGATAA CAATGGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIX:174844-175214 + 48 4.27e-11 ACCAACAAGT ACGAGCTTCTATGGCCAAGTTGGTAAGGCG CCACACTAGT chrVIII:132808-133366 - 45 6.83e-11 CTTATATAAT AAGTGGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIX:183291-183698 - 44 6.83e-11 TTCAACAAAT TCCTGGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIII:227737-228232 + 4 6.83e-11 TCG AAATGGCACTATGGCCGAGTGGTTAAGGCG AGAGACTCGA chrXII:605141-605633 - 70 1.07e-10 A AAATGCTCGTGTAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrX:58983-59382 - 15 1.07e-10 AATATAAAAT AGAAGCTTCTATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXI:379468-379924 + 30 1.24e-10 TTTACAGATT AATAGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378145-378615 + 26 1.24e-10 TTCATAAATT AATAGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:438475-438947 + 35 1.44e-10 TTTTCAACAA ATTAGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXVI:581840-582256 + 60 1.91e-10 ATTTCAACAA AAGAGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXIII:258994-259435 - 50 1.91e-10 AATCAAGTTA GTATGGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXI:307890-308482 - 56 1.91e-10 TTCAACAATT AAGTGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrIII:151118-151596 - 24 1.91e-10 TTCATAATTA AAGAGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1201497-1201986 + 55 2.19e-10 GTCACAAATA AATAGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:121977-122585 + 34 2.51e-10 TTTCCAACGA ATTAGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:730930-731417 + 10 3.29e-10 ACATAGTCA AAAAGACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrX:617696-618150 + 42 4.27e-10 ATTCAACAAA CAATGGGAGTTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXV:353908-354319 - 25 4.86e-10 AATAACGGTT TACTGCTTCTATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:228100-228581 + 37 5.52e-10 TTCATAAAAT ATTAGACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIII:372192-372773 - 61 5.52e-10 TTTCAATAAA ACCTGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:74409-74822 + 55 5.52e-10 AAATATAGCA ATTAGACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVII:823347-823706 + 2 5.52e-10 A GAGTGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIV:374652-375103 + 38 7.10e-10 TTTCAGAAAA ATAAGCGGACTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIII:504628-505158 + 48 8.03e-10 TTCAACAGAT AAGTGGTTGTTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:422847-423355 + 37 8.03e-10 TTCAACAGAT AAGTGGTTGTTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:205296-205793 + 23 8.03e-10 ACATACAAAT AAGTGGTTGTTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrIV:1150692-1151181 - 30 9.07e-10 TTCAAAGTGT TTCAGTCCCAGTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrXIII:352062-352551 + 20 1.15e-09 ATATATGAAT ATAAGCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIII:480386-480946 - 52 1.30e-09 AATAACAATA AGTAGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXVI:622319-622852 - 71 1.83e-09 . ATATGCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:358266-358807 - 58 2.85e-09 ATAACAAATA GTAAGCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:237721-238088 - 60 2.85e-09 TCAACAAATA GTAAGCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXI:84001-84437 + 35 3.53e-09 AGTAAAATTT GTATGGAGGGTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:424279-424732 - 35 5.93e-09 TTTTTAAATA AGATGGAGGGTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:422677-423266 + 12 7.25e-09 AACATCCTTT GTATGCTTCAGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrIV:1175596-1176074 + 40 8.00e-09 CTGTACAAAA CAAAGCTTCAGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXVI:860129-860692 + 15 1.07e-08 CATGTAAATA ACAAGCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVI:162023-162389 + 68 1.07e-08 TCACAAGAAA ACAAGCGCAAGTGGTTTAGTGGTAAAATCC AAC chrXVI:744049-744598 + 7 1.42e-08 CAGTGT AAAAGCCTCCTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrX:396507-397023 - 56 1.42e-08 CATATCAAAA GTAAGCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:115284-115731 + 27 1.70e-08 ATCCGAAGAA CTCATCCTTGTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrIV:359362-359825 + 30 1.70e-08 CTCCGAAGAA CTCATCCTTGTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXV:281886-282408 + 63 2.43e-08 GATAACATGA AAGCGCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGC chrVII:661485-661982 + 62 2.89e-08 CTTGGTAAAA ATTTGCCTCCTTAGCTTAGTGGTAGAGCGT TGCACTTGT chrXIII:808111-808512 - 31 3.15e-08 CAACAGAAGA AAAAGGTCCTATAGTGTAGTGGTTATCACT TTCGGTTCTG chrXV:226459-226867 - 43 4.40e-08 CATCAAGAAA TTCAGCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXII:962834-963282 - 22 4.77e-08 GTTGTATTAT CGACGGAGGGTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrVII:1004001-1004425 + 49 5.60e-08 AACTTCAAGG GTTTGCCTCCTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrI:138931-139352 + 57 1.12e-07 ACATCAATTA GTACGGGCGTGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXVI:775608-776087 - 14 2.78e-07 ACCATAATTC AAAAGCTCGTATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrVI:210460-210992 - 6 3.60e-07 ATCAACAAAA ACGACTCTCGGTAGCCAAGTTGGTTTAAGG CGCAA chrVI:167170-167686 + 55 3.60e-07 TACAACAAAA ACGACTCTCGGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXV:110847-111203 - 33 4.09e-07 ATAACAATTA ACCCGGGCGGTTAGTGTAGTGGTTATCATC CCACCCTTCC chrXII:448480-448995 - 9 4.09e-07 CATCAAGAAG TTCCGGTCCTATAGTGTAGTGGTTATCACT TTCGGTTT chrVIII:134041-134689 + 2 4.09e-07 G TTCCGGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXIII:747691-748169 - 58 4.63e-07 GAAACATATG ACTAGCTCGCGTGGCGTAATGGCAACGCGT CTGACTTCTA chrII:350594-351055 + 49 4.93e-07 ACCATCAATA AAAGGGTTTTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrX:517661-518122 - 18 2.52e-06 ATTCATAAAA GTTAAGCGCCGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrIV:1075299-1075762 - 39 4.97e-06 TCATCCGTAA TATTGTTCCAATAGTGTAGCGGCTATCACG TTGCCTTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWWWGSBYNBKTGGCBYAGTKGKTWRAGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:738736-739598 2.8e-13 [+2]_70 chrXI:219680-220109 1.5e-12 46_[+2]_24 chrX:197172-197523 1.8e-12 62_[-2]_8 chrXII:656838-657220 3.5e-12 1_[-2]_69 chrXII:734573-735007 5.1e-12 57_[+2]_13 chrXIV:602078-602553 7.5e-12 42_[+2]_28 chrIX:174844-175214 4.3e-11 47_[+2]_23 chrVIII:132808-133366 6.8e-11 44_[-2]_26 chrIX:183291-183698 6.8e-11 43_[-2]_27 chrIII:227737-228232 6.8e-11 3_[+2]_67 chrXII:605141-605633 1.1e-10 69_[-2]_1 chrX:58983-59382 1.1e-10 14_[-2]_56 chrXI:379468-379924 1.2e-10 29_[+2]_41 chrX:378145-378615 1.2e-10 25_[+2]_45 chrV:438475-438947 1.4e-10 34_[+2]_36 chrXVI:581840-582256 1.9e-10 59_[+2]_11 chrXIII:258994-259435 1.9e-10 49_[-2]_21 chrXI:307890-308482 1.9e-10 55_[-2]_15 chrIII:151118-151596 1.9e-10 23_[-2]_47 chrIV:1201497-1201986 2.2e-10 54_[+2]_16 chrVII:121977-122585 2.5e-10 33_[+2]_37 chrVII:730930-731417 3.3e-10 9_[+2]_61 chrX:617696-618150 4.3e-10 41_[+2]_29 chrXV:353908-354319 4.9e-10 24_[-2]_46 chrXV:228100-228581 5.5e-10 36_[+2]_34 chrXIII:372192-372773 5.5e-10 60_[-2]_10 chrXI:74409-74822 5.5e-10 54_[+2]_16 chrVII:823347-823706 5.5e-10 1_[+2]_69 chrXIV:374652-375103 7.1e-10 37_[+2]_33 chrXIII:504628-505158 8e-10 47_[+2]_23 chrVII:422847-423355 8e-10 36_[+2]_34 chrVII:205296-205793 8e-10 22_[+2]_48 chrIV:1150692-1151181 9.1e-10 29_[-2]_41 chrXIII:352062-352551 1.2e-09 19_[+2]_51 chrXIII:480386-480946 1.3e-09 51_[-2]_19 chrXVI:622319-622852 1.8e-09 70_[-2] chrVIII:358266-358807 2.9e-09 57_[-2]_13 chrVIII:237721-238088 2.9e-09 59_[-2]_11 chrXI:84001-84437 3.5e-09 34_[+2]_36 chrX:424279-424732 5.9e-09 34_[-2]_36 chrX:422677-423266 7.2e-09 11_[+2]_59 chrIV:1175596-1176074 8e-09 39_[+2]_31 chrXVI:860129-860692 1.1e-08 14_[+2]_56 chrVI:162023-162389 1.1e-08 67_[+2]_3 chrXVI:744049-744598 1.4e-08 6_[+2]_64 chrX:396507-397023 1.4e-08 55_[-2]_15 chrVII:115284-115731 1.7e-08 26_[+2]_44 chrIV:359362-359825 1.7e-08 29_[+2]_41 chrXV:281886-282408 2.4e-08 62_[+2]_8 chrVII:661485-661982 2.9e-08 61_[+2]_9 chrXIII:808111-808512 3.1e-08 30_[-2]_40 chrXV:226459-226867 4.4e-08 42_[-2]_28 chrXII:962834-963282 4.8e-08 21_[-2]_49 chrVII:1004001-1004425 5.6e-08 48_[+2]_22 chrI:138931-139352 1.1e-07 56_[+2]_14 chrXVI:775608-776087 2.8e-07 13_[-2]_57 chrVI:210460-210992 3.6e-07 5_[-2]_65 chrVI:167170-167686 3.6e-07 54_[+2]_16 chrXV:110847-111203 4.1e-07 32_[-2]_38 chrXII:448480-448995 4.1e-07 8_[-2]_62 chrVIII:134041-134689 4.1e-07 1_[+2]_69 chrXIII:747691-748169 4.6e-07 57_[-2]_13 chrII:350594-351055 4.9e-07 48_[+2]_22 chrX:517661-518122 2.5e-06 17_[-2]_53 chrIV:1075299-1075762 5e-06 38_[-2]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWWWGSBYNBKTGGCBYAGTKGKTWRAGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWWWGSBYNBKTGGCBYAGTKGKTWRAGSS width=30 seqs=65 chrVII:738736-739598 ( 1) AATAGGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXI:219680-220109 ( 47) AATAGGGCGTGTGGCGTAGTCGGTAGCGCG 1 chrX:197172-197523 ( 63) ATTAGGGCGTGTGGCGTAGTCGGTAGCGCG 1 chrXII:656838-657220 ( 2) AATTGGGCGTGTGGCGTAGTCGGTAGCGCG 1 chrXII:734573-735007 ( 58) GTTTGGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXIV:602078-602553 ( 43) CAATGGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrIX:174844-175214 ( 48) ACGAGCTTCTATGGCCAAGTTGGTAAGGCG 1 chrVIII:132808-133366 ( 45) AAGTGGCAACTTGGCCGAGTGGTTAAGGCG 1 chrIX:183291-183698 ( 44) TCCTGGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrIII:227737-228232 ( 4) AAATGGCACTATGGCCGAGTGGTTAAGGCG 1 chrXII:605141-605633 ( 70) AAATGCTCGTGTAGCTCAGTGGTTAGAGCT 1 chrX:58983-59382 ( 15) AGAAGCTTCTATGGCCAAGTTGGTAAGGCG 1 chrXI:379468-379924 ( 30) AATAGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrX:378145-378615 ( 26) AATAGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrV:438475-438947 ( 35) ATTAGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXVI:581840-582256 ( 60) AAGAGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrXIII:258994-259435 ( 50) GTATGGCAACTTGGCCGAGTGGTTAAGGCG 1 chrXI:307890-308482 ( 56) AAGTGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrIII:151118-151596 ( 24) AAGAGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrIV:1201497-1201986 ( 55) AATAGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrVII:121977-122585 ( 34) ATTAGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrVII:730930-731417 ( 10) AAAAGACTCCATGGCCAAGTTGGTTAAGGC 1 chrX:617696-618150 ( 42) CAATGGGAGTTTGGCCGAGTGGTTTAAGGC 1 chrXV:353908-354319 ( 25) TACTGCTTCTATGGCCAAGTTGGTAAGGCG 1 chrXV:228100-228581 ( 37) ATTAGACTCCATGGCCAAGTTGGTTAAGGC 1 chrXIII:372192-372773 ( 61) ACCTGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXI:74409-74822 ( 55) ATTAGACTCCATGGCCAAGTTGGTTAAGGC 1 chrVII:823347-823706 ( 2) GAGTGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXIV:374652-375103 ( 38) ATAAGCGGACTTAGCTCAGTTGGGAGAGCG 1 chrXIII:504628-505158 ( 48) AAGTGGTTGTTTGGCCGAGCGGTCTAAGGC 1 chrVII:422847-423355 ( 37) AAGTGGTTGTTTGGCCGAGCGGTCTAAGGC 1 chrVII:205296-205793 ( 23) AAGTGGTTGTTTGGCCGAGCGGTCTAAGGC 1 chrIV:1150692-1151181 ( 30) TTCAGTCCCAGTGGCCGAGTGGTTAAGGCG 1 chrXIII:352062-352551 ( 20) ATAAGCGGATTTAGCTCAGTTGGGAGAGCG 1 chrXIII:480386-480946 ( 52) AGTAGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrXVI:622319-622852 ( 71) ATATGCGGATTTAGCTCAGTTGGGAGAGCG 1 chrVIII:358266-358807 ( 58) GTAAGCGGATTTAGCTCAGTTGGGAGAGCG 1 chrVIII:237721-238088 ( 60) GTAAGCGGATTTAGCTCAGTTGGGAGAGCG 1 chrXI:84001-84437 ( 35) GTATGGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrX:424279-424732 ( 35) AGATGGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrX:422677-423266 ( 12) GTATGCTTCAGTAGCTCAGTAGGAAGAGCG 1 chrIV:1175596-1176074 ( 40) CAAAGCTTCAGTAGCTCAGTAGGAAGAGCG 1 chrXVI:860129-860692 ( 15) ACAAGCGCAAGTGGTTTAGTGGTAAAATCC 1 chrVI:162023-162389 ( 68) ACAAGCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXVI:744049-744598 ( 7) AAAAGCCTCCTTAGCTTAGTGGTAGAGCGT 1 chrX:396507-397023 ( 56) GTAAGCGCAAGTGGTTTAGTGGTAAAATCC 1 chrVII:115284-115731 ( 27) CTCATCCTTGTTAGCTCAGTTGGTAGAGCG 1 chrIV:359362-359825 ( 30) CTCATCCTTGTTAGCTCAGTTGGTAGAGCG 1 chrXV:281886-282408 ( 63) AAGCGCGCAAGTGGTTTAGTGGTAAAATCC 1 chrVII:661485-661982 ( 62) ATTTGCCTCCTTAGCTTAGTGGTAGAGCGT 1 chrXIII:808111-808512 ( 31) AAAAGGTCCTATAGTGTAGTGGTTATCACT 1 chrXV:226459-226867 ( 43) TTCAGCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXII:962834-963282 ( 22) CGACGGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrVII:1004001-1004425 ( 49) GTTTGCCTCCTTAGCTTAGTGGTAGAGCGT 1 chrI:138931-139352 ( 57) GTACGGGCGTGTGGTCTAGTGGTATGATTC 1 chrXVI:775608-776087 ( 14) AAAAGCTCGTATGGCGCAGTGGTAGCGCAG 1 chrVI:210460-210992 ( 6) ACGACTCTCGGTAGCCAAGTTGGTTTAAGG 1 chrVI:167170-167686 ( 55) ACGACTCTCGGTAGCCAAGTTGGTTTAAGG 1 chrXV:110847-111203 ( 33) ACCCGGGCGGTTAGTGTAGTGGTTATCATC 1 chrXII:448480-448995 ( 9) TTCCGGTCCTATAGTGTAGTGGTTATCACT 1 chrVIII:134041-134689 ( 2) TTCCGGTCCTATAGTGTAGTGGTTATCACT 1 chrXIII:747691-748169 ( 58) ACTAGCTCGCGTGGCGTAATGGCAACGCGT 1 chrII:350594-351055 ( 49) AAAGGGTTTTATAGTGTAGTGGTTATCACT 1 chrX:517661-518122 ( 18) GTTAAGCGCCGTGGCGCAGTGGAAGCGCGC 1 chrIV:1075299-1075762 ( 39) TATTGTTCCAATAGTGTAGCGGCTATCACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWWWGSBYNBKTGGCBYAGTKGKTWRAGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 38624 bayes= 7.46219 E= 1.0e-188 104 -107 -20 -151 44 -49 -166 33 33 -33 -7 -14 82 -107 -365 21 -431 -266 225 -331 -273 115 125 -231 -273 67 34 39 -231 80 -49 59 -73 67 25 -14 -114 74 4 15 -61 -1267 87 54 -1267 -1267 -1267 171 8 -1267 180 -1267 -1267 -1267 237 -1267 -1267 190 -1267 -14 -1267 125 43 -14 -131 74 -20 33 171 -1267 -1267 -1267 -173 -1267 223 -1267 -1267 -166 -1267 162 -331 15 125 -7 -1267 -1267 237 -1267 -431 -266 147 44 -51 -107 -133 101 90 -1267 -133 21 82 -207 59 -131 69 15 4 -173 -131 -107 184 -173 -431 147 110 -331 -1267 115 115 -114 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWWWGSBYNBKTGGCBYAGTKGKTWRAGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 65 E= 1.0e-188 0.630769 0.092308 0.169231 0.107692 0.415385 0.138462 0.061538 0.384615 0.384615 0.153846 0.184615 0.276923 0.538462 0.092308 0.015385 0.353846 0.015385 0.030769 0.923077 0.030769 0.046154 0.430769 0.461538 0.061538 0.046154 0.307692 0.246154 0.400000 0.061538 0.338462 0.138462 0.461538 0.184615 0.307692 0.230769 0.276923 0.138462 0.323077 0.200000 0.338462 0.200000 0.000000 0.353846 0.446154 0.000000 0.000000 0.000000 1.000000 0.323077 0.000000 0.676923 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.723077 0.000000 0.276923 0.000000 0.461538 0.261538 0.276923 0.123077 0.323077 0.169231 0.384615 1.000000 0.000000 0.000000 0.000000 0.092308 0.000000 0.907692 0.000000 0.000000 0.061538 0.000000 0.938462 0.030769 0.215385 0.461538 0.292308 0.000000 0.000000 1.000000 0.000000 0.015385 0.030769 0.538462 0.415385 0.215385 0.092308 0.076923 0.615385 0.569231 0.000000 0.076923 0.353846 0.538462 0.046154 0.292308 0.123077 0.492308 0.215385 0.200000 0.092308 0.123077 0.092308 0.692308 0.092308 0.015385 0.538462 0.415385 0.030769 0.000000 0.430769 0.430769 0.138462 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWWWGSBYNBKTGGCBYAGTKGKTWRAGSS MEME-2 regular expression -------------------------------------------------------------------------------- A[AT][AT][AT]G[GC][TCG][TC][CTG][TCG][TGA]T[GA]G[CT][CTG][TC]AGT[GTC]G[GT][TA][AT][AG][ACG]G[CG][CG] -------------------------------------------------------------------------------- Time 551.65 secs. ******************************************************************************** ******************************************************************************** MOTIF GRMTCGAACHSSGGACMTYCTGMBYRYTAA MEME-3 width = 30 sites = 26 llr = 531 E-value = 3.2e-066 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRMTCGAACHSSGGACMTYCTGMBYRYTAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :54:::a734:2:17:3::22:51251:76 pos.-specific C 3:4:9::3735513385:4721333:3::: probability G 7513:a:::153871:2:::2912:3:2:3 matrix T ::171::::2::2::2:a625::4516731 bits 2.4 * 2.1 * 1.9 ** * 1.7 *** * * Relative 1.4 * *** * * * * * Entropy 1.2 * *** * * ** * * * (29.4 bits) 0.9 ** **** * * ** * *** * 0.7 ** ****** ********** ** *** 0.5 ********* ********** ** ****** 0.2 ****************************** 0.0 ------------------------------ Multilevel GGATCGAACACCGGACCTTCTGATTATTAA consensus CACG CACGG CC A C CCCGCGTG sequence T A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRMTCGAACHSSGGACMTYCTGMBYRYTAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXI:379468-379924 - 66 1.94e-13 GCCCA GGATCGAACTGGGGACGTTCTGCGTGTTAA GCAGATGCCA chrXI:307890-308482 + 20 1.94e-13 ATTTCGCCCA GGATCGAACTGGGGACGTTCTGCGTGTTAA GCAGATGCCA chrX:378145-378615 - 62 1.94e-13 TTTCGCCCA GGATCGAACTGGGGACGTTCTGCGTGTTAA GCAGATGCCA chrV:438475-438947 - 71 1.94e-13 . GGATCGAACTGGGGACGTTCTGCGTGTTAA GCAGATGCCA chrXVI:622319-622852 + 17 6.58e-12 CGAATTCTGT GGATCGAACACAGGACCTCCAGATAACTTG ACCGAAGTTT chrVIII:358266-358807 + 4 6.58e-12 TGT GGATCGAACACAGGACCTCCAGATAACTTG ACCGAAGTTT chrVIII:237721-238088 + 6 6.58e-12 TCTGT GGATCGAACACAGGACCTCCAGATAACTTG ACCGAAGTTT chrIII:123426-123816 + 18 7.51e-12 GGCGAGCCGG GACTCGAACCCGGGACCTCCCGCACCCTAA GCGAGAATCA chrXII:426888-427494 - 2 3.24e-11 CCCGATCTGG CACGCGACAAGCGCCCATTCTGACCATTAA A chrX:355200-355779 - 28 3.24e-11 CCCGATCTGG CACGCGACAAGCGCCCATTCTGACCATTAA ACTATCACGG chrX:204519-205029 - 22 3.24e-11 CCCGATCTGG CACGCGACAAGCGCCCATTCTGACCATTAA ACTATCACGG chrVII:544414-544890 + 6 3.24e-11 TCTGG CACGCGACAAGCGCCCATTCTGACCATTAA ACTATCACGG chrIX:336094-336639 + 64 3.24e-11 CCCGATCTGG CACGCGACAAGCGCCCATTCTGACCATTAA ACTATCA chrIV:568702-569338 - 5 3.24e-11 CCCGATCTGG CACGCGACAAGCGCCCATTCTGACCATTAA ACTA chrII:405677-406352 - 7 3.24e-11 CCCGATCTGG CACGCGACAAGCGCCCATTCTGACCATTAA ACTATC chrIV:1075299-1075762 + 4 6.99e-11 CGA GGATCGAACTCGGGACCTTTGCCGTGTGAA GGCAACGTGA chrXIII:480386-480946 + 17 4.83e-10 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATTAAGAG TCATACGCGC chrVII:121977-122585 - 69 4.83e-10 GG GGCTCGAACCCCTAACCTTATGATTAAGAG TCATACGCGC chrII:326514-327170 + 12 3.43e-09 ATCCAACCGA GGTTCGAACTCGGGATCTTCGCCGTGTAAA GGCGACGTCT chrIX:183291-183698 + 8 4.22e-09 TCTAGCG GGATCGAACCGCTGATCCCCGCGTTATTAG CACGGTGCCT chrXIII:195934-196306 + 10 1.16e-08 GCGAGCTGG GAATTGAACCCAGGGCCTCTCGCATGCTTT GTCTTCCTGT chrVIII:388664-389208 + 19 1.16e-08 GGCGAGCTGG GAATTGAACCCAGGGCCTCTCGCATGCTTT GTCTTCCTGT chrXIII:837711-838211 - 64 1.39e-08 CGGGGGC GAGTCGAACGCCCGATCTCAAGATTTCGTA GTGGTAAATT chrX:542767-543257 + 6 1.39e-08 GGGGC GAGTCGAACGCCCGATCTCAAGATTTCGTA GTGATAAATT chrXVI:769026-769482 + 15 2.28e-08 CCTCATAGGG GGCTCGAACCCCTGACATTTCGGTATCCTT GCTTAAGCAA chrIII:149722-150174 - 52 2.41e-08 GCGCCGCTCG GTTTCGATCCGAGGACATCAGGGTTATGAG CCCTGCGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRMTCGAACHSSGGACMTYCTGMBYRYTAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXI:379468-379924 1.9e-13 65_[-3]_5 chrXI:307890-308482 1.9e-13 19_[+3]_51 chrX:378145-378615 1.9e-13 61_[-3]_9 chrV:438475-438947 1.9e-13 70_[-3] chrXVI:622319-622852 6.6e-12 16_[+3]_54 chrVIII:358266-358807 6.6e-12 3_[+3]_67 chrVIII:237721-238088 6.6e-12 5_[+3]_65 chrIII:123426-123816 7.5e-12 17_[+3]_53 chrXII:426888-427494 3.2e-11 1_[-3]_69 chrX:355200-355779 3.2e-11 27_[-3]_43 chrX:204519-205029 3.2e-11 21_[-3]_49 chrVII:544414-544890 3.2e-11 5_[+3]_65 chrIX:336094-336639 3.2e-11 63_[+3]_7 chrIV:568702-569338 3.2e-11 4_[-3]_66 chrII:405677-406352 3.2e-11 6_[-3]_64 chrIV:1075299-1075762 7e-11 3_[+3]_67 chrXIII:480386-480946 4.8e-10 16_[+3]_54 chrVII:121977-122585 4.8e-10 68_[-3]_2 chrII:326514-327170 3.4e-09 11_[+3]_59 chrIX:183291-183698 4.2e-09 7_[+3]_63 chrXIII:195934-196306 1.2e-08 9_[+3]_61 chrVIII:388664-389208 1.2e-08 18_[+3]_52 chrXIII:837711-838211 1.4e-08 63_[-3]_7 chrX:542767-543257 1.4e-08 5_[+3]_65 chrXVI:769026-769482 2.3e-08 14_[+3]_56 chrIII:149722-150174 2.4e-08 51_[-3]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRMTCGAACHSSGGACMTYCTGMBYRYTAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRMTCGAACHSSGGACMTYCTGMBYRYTAA width=30 seqs=26 chrXI:379468-379924 ( 66) GGATCGAACTGGGGACGTTCTGCGTGTTAA 1 chrXI:307890-308482 ( 20) GGATCGAACTGGGGACGTTCTGCGTGTTAA 1 chrX:378145-378615 ( 62) GGATCGAACTGGGGACGTTCTGCGTGTTAA 1 chrV:438475-438947 ( 71) GGATCGAACTGGGGACGTTCTGCGTGTTAA 1 chrXVI:622319-622852 ( 17) GGATCGAACACAGGACCTCCAGATAACTTG 1 chrVIII:358266-358807 ( 4) GGATCGAACACAGGACCTCCAGATAACTTG 1 chrVIII:237721-238088 ( 6) GGATCGAACACAGGACCTCCAGATAACTTG 1 chrIII:123426-123816 ( 18) GACTCGAACCCGGGACCTCCCGCACCCTAA 1 chrXII:426888-427494 ( 2) CACGCGACAAGCGCCCATTCTGACCATTAA 1 chrX:355200-355779 ( 28) CACGCGACAAGCGCCCATTCTGACCATTAA 1 chrX:204519-205029 ( 22) CACGCGACAAGCGCCCATTCTGACCATTAA 1 chrVII:544414-544890 ( 6) CACGCGACAAGCGCCCATTCTGACCATTAA 1 chrIX:336094-336639 ( 64) CACGCGACAAGCGCCCATTCTGACCATTAA 1 chrIV:568702-569338 ( 5) CACGCGACAAGCGCCCATTCTGACCATTAA 1 chrII:405677-406352 ( 7) CACGCGACAAGCGCCCATTCTGACCATTAA 1 chrIV:1075299-1075762 ( 4) GGATCGAACTCGGGACCTTTGCCGTGTGAA 1 chrXIII:480386-480946 ( 17) GGCTCGAACCCCTAACCTTATGATTAAGAG 1 chrVII:121977-122585 ( 69) GGCTCGAACCCCTAACCTTATGATTAAGAG 1 chrII:326514-327170 ( 12) GGTTCGAACTCGGGATCTTCGCCGTGTAAA 1 chrIX:183291-183698 ( 8) GGATCGAACCGCTGATCCCCGCGTTATTAG 1 chrXIII:195934-196306 ( 10) GAATTGAACCCAGGGCCTCTCGCATGCTTT 1 chrVIII:388664-389208 ( 19) GAATTGAACCCAGGGCCTCTCGCATGCTTT 1 chrXIII:837711-838211 ( 64) GAGTCGAACGCCCGATCTCAAGATTTCGTA 1 chrX:542767-543257 ( 6) GAGTCGAACGCCCGATCTCAAGATTTCGTA 1 chrXVI:769026-769482 ( 15) GGCTCGAACCCCTGACATTTCGGTATCCTT 1 chrIII:149722-150174 ( 52) GTTTCGATCCGAGGACATCAGGGTTATGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRMTCGAACHSSGGACMTYCTGMBYRYTAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 38624 bayes= 10.2912 E= 3.2e-066 -1134 47 191 -1134 59 -1134 137 -299 47 112 -133 -199 -1134 -1134 47 126 -1134 225 -1134 -199 -1134 -1134 237 -1134 171 -1134 -1134 -1134 118 47 -1134 -299 -18 191 -1134 -1134 33 67 -133 -41 -1134 137 137 -1134 -41 137 47 -1134 -1134 -133 199 -99 -199 47 175 -1134 110 47 -133 -1134 -1134 212 -1134 -99 18 137 -33 -1134 -1134 -233 -1134 165 -1134 99 -1134 101 -67 175 -1134 -99 -67 -33 -33 71 -1134 -75 219 -1134 82 84 -75 -1134 -141 47 25 33 -99 67 -1134 82 82 -233 67 -141 -199 84 -1134 91 -299 -233 25 118 118 -1134 -1134 1 101 -1134 47 -141 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRMTCGAACHSSGGACMTYCTGMBYRYTAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 26 E= 3.2e-066 0.000000 0.269231 0.730769 0.000000 0.461538 0.000000 0.500000 0.038462 0.423077 0.423077 0.076923 0.076923 0.000000 0.000000 0.269231 0.730769 0.000000 0.923077 0.000000 0.076923 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.692308 0.269231 0.000000 0.038462 0.269231 0.730769 0.000000 0.000000 0.384615 0.307692 0.076923 0.230769 0.000000 0.500000 0.500000 0.000000 0.230769 0.500000 0.269231 0.000000 0.000000 0.076923 0.769231 0.153846 0.076923 0.269231 0.653846 0.000000 0.653846 0.269231 0.076923 0.000000 0.000000 0.846154 0.000000 0.153846 0.346154 0.500000 0.153846 0.000000 0.000000 0.038462 0.000000 0.961538 0.000000 0.384615 0.000000 0.615385 0.192308 0.653846 0.000000 0.153846 0.192308 0.153846 0.153846 0.500000 0.000000 0.115385 0.884615 0.000000 0.538462 0.346154 0.115385 0.000000 0.115385 0.269231 0.230769 0.384615 0.153846 0.307692 0.000000 0.538462 0.538462 0.038462 0.307692 0.115385 0.076923 0.346154 0.000000 0.576923 0.038462 0.038462 0.230769 0.692308 0.692308 0.000000 0.000000 0.307692 0.615385 0.000000 0.269231 0.115385 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRMTCGAACHSSGGACMTYCTGMBYRYTAA MEME-3 regular expression -------------------------------------------------------------------------------- [GC][GA][AC][TG]CGA[AC][CA][ACT][CG][CGA]G[GC][AC]C[CA]T[TC]CTG[AC][TCG][TC][AG][TC][TG][AT][AG] -------------------------------------------------------------------------------- Time 803.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71749-73280 6.02e-01 100 chrI:81900-82315 5.79e-01 100 chrI:138931-139352 3.36e-04 56_[+2(1.12e-07)]_14 chrI:141660-141896 9.88e-01 100 chrI:142136-143564 5.76e-01 100 chrI:166171-166595 7.95e-01 100 chrII:9462-10253 8.05e-01 100 chrII:36234-36671 5.25e-10 44_[-3(6.69e-09)]_26 chrII:44790-45386 8.37e-01 100 chrII:60629-61385 2.84e-01 100 chrII:88922-90327 4.52e-01 100 chrII:144027-145463 9.12e-01 100 chrII:163091-163991 3.26e-01 100 chrII:165085-165427 6.71e-01 100 chrII:167890-169514 6.46e-01 100 chrII:181267-181806 9.90e-01 100 chrII:192513-193477 3.91e-01 100 chrII:197263-197839 2.02e-12 45_[-1(9.24e-11)]_25 chrII:226975-227348 4.91e-07 24_[-1(2.19e-10)]_46 chrII:255099-256024 4.13e-02 36_[+3(6.91e-05)]_34 chrII:256210-257452 9.92e-01 100 chrII:266219-266782 9.65e-01 100 chrII:326514-327170 1.31e-07 11_[+3(3.43e-09)]_6_[-2(2.06e-05)]_\ 23 chrII:332271-333076 3.76e-01 100 chrII:347383-347953 1.93e-04 47_[-1(2.99e-07)]_23 chrII:350594-351055 1.11e-03 48_[+2(4.93e-07)]_22 chrII:405677-406352 1.05e-14 6_[-3(3.24e-11)]_10_[-1(3.70e-11)]_\ 24 chrII:408673-408891 2.02e-01 100 chrII:415485-416118 9.41e-01 100 chrII:477024-477778 3.46e-01 100 chrII:592799-593284 5.87e-01 100 chrII:604058-607114 3.39e-01 100 chrII:612283-613949 8.57e-01 100 chrII:642863-643077 7.66e-01 100 chrII:644923-645417 3.56e-02 100 chrII:680380-682441 1.52e-01 100 chrIII:70-1700 9.11e-02 [+2(8.85e-05)]_70 chrIII:57379-59438 7.98e-01 100 chrIII:82458-82655 1.73e-01 100 chrIII:90783-91114 1.99e-06 53_[-1(7.89e-09)]_17 chrIII:123426-123816 1.42e-10 17_[+3(7.51e-12)]_4_[-2(1.20e-05)]_\ 19 chrIII:127460-127904 6.69e-01 100 chrIII:137757-138986 1.89e-01 100 chrIII:142286-143001 7.93e-01 100 chrIII:149722-150174 7.16e-07 17_[+2(9.17e-06)]_4_[-3(2.41e-08)]_\ 19 chrIII:151118-151596 1.46e-07 23_[-2(1.91e-10)]_47 chrIII:162539-163906 8.84e-01 100 chrIII:168102-168546 1.62e-07 17_[+1(4.06e-09)]_53 chrIII:177038-178759 1.06e-01 100 chrIII:227737-228232 2.75e-07 3_[+2(6.83e-11)]_67 chrIII:295341-295951 6.07e-01 100 chrIII:308587-308950 9.20e-02 100 chrIII:316239-316591 3.13e-02 100 chrIV:83337-83823 3.56e-12 13_[+2(3.15e-08)]_24_[-1(9.63e-10)]_\ 3 chrIV:117147-118211 7.63e-01 100 chrIV:129880-131022 3.73e-01 100 chrIV:216754-218072 6.16e-01 100 chrIV:221064-222354 6.07e-01 100 chrIV:229456-230509 9.30e-01 100 chrIV:234301-234580 5.43e-01 100 chrIV:307996-309363 3.85e-01 100 chrIV:321464-321969 9.49e-01 100 chrIV:322206-323617 8.86e-01 100 chrIV:340563-341703 8.29e-02 18_[-1(8.25e-05)]_52 chrIV:358059-358456 7.06e-01 100 chrIV:359362-359825 1.12e-05 29_[+2(1.70e-08)]_41 chrIV:410209-410458 7.54e-01 100 chrIV:411220-411676 5.77e-02 100 chrIV:434033-435046 3.66e-01 100 chrIV:437549-438108 1.22e-05 54_[-1(7.89e-09)]_16 chrIV:465098-470430 2.64e-01 100 chrIV:488432-488996 8.38e-01 100 chrIV:489895-492548 9.72e-01 100 chrIV:519658-519975 8.77e-05 39_[-1(2.99e-07)]_31 chrIV:520700-521444 5.42e-06 [-1(6.94e-10)]_70 chrIV:538869-539370 1.42e-01 100 chrIV:541251-541901 2.34e-01 100 chrIV:555775-556456 1.78e-01 100 chrIV:568702-569338 9.25e-15 4_[-3(3.24e-11)]_10_[-1(2.46e-11)]_\ 26 chrIV:578856-580746 4.48e-01 100 chrIV:601244-602334 1.00e-01 100 chrIV:619635-620216 4.63e-01 100 chrIV:667671-668584 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7.95e-01 100 chrXIII:352062-352551 4.28e-06 19_[+2(1.15e-09)]_51 chrXIII:362938-363423 8.60e-01 100 chrXIII:372192-372773 8.17e-22 24_[+3(1.94e-13)]_6_[-2(5.52e-10)]_\ 10 chrXIII:378932-379612 6.63e-01 100 chrXIII:420329-420857 1.36e-15 56_[+3(1.94e-13)]_14 chrXIII:463436-463854 1.84e-07 9_[-1(2.82e-11)]_61 chrXIII:480386-480946 2.51e-12 16_[+3(4.83e-10)]_5_[-2(1.30e-09)]_\ 19 chrXIII:504628-505158 7.48e-06 47_[+2(8.03e-10)]_23 chrXIII:551016-553294 3.43e-01 100 chrXIII:572373-573351 3.14e-07 61_[+1(1.86e-11)]_9 chrXIII:586350-586905 1.25e-15 70_[+3(1.94e-13)] chrXIII:650837-651877 6.91e-01 100 chrXIII:652065-652883 9.47e-01 100 chrXIII:671885-674648 9.28e-01 100 chrXIII:731504-733442 8.35e-01 100 chrXIII:747691-748169 2.02e-13 2_[+1(4.42e-10)]_25_[-2(4.63e-07)]_\ 13 chrXIII:753002-755614 8.02e-01 100 chrXIII:768173-768447 9.13e-01 100 chrXIII:808111-808512 1.50e-04 30_[-2(3.15e-08)]_40 chrXIII:837711-838211 2.28e-08 12_[+2(7.48e-07)]_21_[-3(1.39e-08)]_\ 7 chrXIII:878959-880796 8.04e-01 100 chrXIII:886990-889101 9.76e-01 100 chrXIV:62884-64484 3.94e-01 100 chrXIV:65283-66234 8.29e-01 100 chrXIV:87397-88691 7.75e-01 100 chrXIV:96028-96459 3.09e-06 38_[+1(9.63e-10)]_32 chrXIV:102576-103470 7.16e-01 100 chrXIV:104588-105338 9.75e-01 100 chrXIV:173574-174675 2.13e-01 100 chrXIV:217289-217550 9.76e-01 100 chrXIV:241383-241885 7.27e-01 100 chrXIV:289655-291748 1.93e-01 100 chrXIV:302649-303853 4.74e-01 100 chrXIV:330493-331175 9.55e-01 100 chrXIV:374652-375103 1.32e-05 37_[+2(7.10e-10)]_33 chrXIV:413556-414893 7.44e-02 100 chrXIV:442852-444816 1.12e-01 100 chrXIV:493922-495772 8.84e-01 100 chrXIV:499285-500735 8.09e-01 100 chrXIV:518805-519140 1.02e-01 100 chrXIV:546415-547454 3.32e-03 69_[+1(6.73e-05)]_1 chrXIV:560491-560789 9.27e-01 100 chrXIV:568053-568447 8.16e-01 100 chrXIV:569651-570058 1.90e-08 53_[+1(7.80e-12)]_17 chrXIV:575087-577396 2.33e-01 100 chrXIV:602078-602553 2.90e-08 42_[+2(7.54e-12)]_28 chrXIV:631685-632015 2.07e-12 57_[+3(7.51e-12)]_13 chrXIV:632498-632871 1.46e-06 17_[-1(2.47e-10)]_53 chrXIV:715982-716523 9.82e-01 100 chrXIV:725351-726359 9.82e-01 100 chrXIV:783720-784319 4.79e-02 100 chrXV:28735-30818 2.46e-01 100 chrXV:79707-80160 7.61e-01 100 chrXV:80340-81518 8.08e-01 100 chrXV:92690-94804 1.33e-01 19_[+3(8.81e-05)]_51 chrXV:109537-110649 1.73e-01 100 chrXV:110847-111203 2.28e-03 32_[-2(4.09e-07)]_38 chrXV:113479-113924 9.16e-01 100 chrXV:159172-160145 1.98e-01 100 chrXV:161081-161695 2.61e-01 100 chrXV:167972-168501 7.35e-01 100 chrXV:216225-216709 4.16e-01 100 chrXV:226459-226867 7.43e-06 9_[+3(7.26e-05)]_3_[-2(4.40e-08)]_\ 28 chrXV:228100-228581 3.41e-07 36_[+2(5.52e-10)]_34 chrXV:252918-254713 1.88e-01 100 chrXV:274457-275020 1.09e-05 64_[-1(6.55e-09)]_6 chrXV:281886-282408 6.07e-05 62_[+2(2.43e-08)]_8 chrXV:287122-288449 6.14e-02 53_[-3(8.00e-05)]_17 chrXV:300863-301904 9.86e-01 100 chrXV:340135-340689 9.56e-01 100 chrXV:353908-354319 7.83e-07 24_[-2(4.86e-10)]_46 chrXV:438415-439541 3.77e-02 100 chrXV:444615-446189 8.61e-01 100 chrXV:464281-464938 8.35e-01 100 chrXV:487433-487757 5.67e-01 100 chrXV:504893-505532 7.41e-01 100 chrXV:552440-552645 7.98e-02 100 chrXV:571714-572173 2.76e-02 60_[+2(8.48e-06)]_10 chrXV:593861-594642 9.82e-01 100 chrXV:619163-621277 9.19e-01 100 chrXV:639204-639468 3.82e-01 100 chrXV:662778-664088 9.82e-01 100 chrXV:677552-679168 1.47e-01 100 chrXV:710070-710741 2.14e-01 100 chrXV:779647-781017 3.59e-01 100 chrXV:796701-798770 9.77e-01 100 chrXV:854036-854766 4.78e-01 100 chrXV:866520-868003 9.46e-01 100 chrXV:881712-882386 7.71e-01 100 chrXV:882797-884089 9.49e-01 100 chrXV:900239-901635 5.02e-01 100 chrXV:968103-968562 3.93e-01 100 chrXV:976381-976700 5.22e-01 100 chrXV:978758-979176 3.14e-01 100 chrXV:979807-981333 8.12e-01 100 chrXV:1003941-1004974 7.38e-01 100 chrXV:1025682-1026190 8.77e-01 100 chrXV:1027835-1029520 3.23e-01 100 chrXV:1039109-1039422 2.69e-01 100 chrXVI:55859-56349 2.31e-01 100 chrXVI:66985-67266 1.33e-01 100 chrXVI:75126-76895 8.70e-01 100 chrXVI:172844-174099 7.12e-01 100 chrXVI:188376-188950 7.73e-02 100 chrXVI:193112-193932 7.41e-01 100 chrXVI:209312-210454 9.94e-01 100 chrXVI:279971-280214 5.52e-01 100 chrXVI:280620-282961 5.01e-01 100 chrXVI:302571-304321 2.61e-01 100 chrXVI:338732-339197 1.56e-01 100 chrXVI:350867-351932 9.72e-01 100 chrXVI:378662-379002 2.68e-01 100 chrXVI:404470-407760 1.34e-01 100 chrXVI:431860-434403 8.96e-01 100 chrXVI:435514-436185 6.30e-01 100 chrXVI:502841-503085 2.61e-01 100 chrXVI:519799-520532 6.56e-01 100 chrXVI:559966-560465 1.15e-12 44_[+3(6.58e-12)]_26 chrXVI:571667-572529 1.53e-01 26_[-3(9.46e-05)]_44 chrXVI:581840-582256 1.88e-06 59_[+2(1.91e-10)]_11 chrXVI:622319-622852 1.17e-14 16_[+3(6.58e-12)]_24_[-2(1.83e-09)] chrXVI:645417-646171 1.81e-01 100 chrXVI:678653-679354 1.46e-02 33_[-3(5.11e-05)]_37 chrXVI:689367-689868 2.79e-06 58_[-1(7.19e-09)]_12 chrXVI:699683-700700 1.57e-01 100 chrXVI:701885-702349 4.70e-01 100 chrXVI:731635-732332 3.09e-01 100 chrXVI:744049-744598 2.00e-13 6_[+2(1.42e-08)]_25_[-1(3.68e-09)]_\ 9 chrXVI:769026-769482 1.16e-06 14_[+3(2.28e-08)]_56 chrXVI:775608-776087 1.78e-04 13_[-2(2.78e-07)]_57 chrXVI:794487-796143 9.78e-01 100 chrXVI:810577-811441 3.29e-01 100 chrXVI:819329-820452 8.53e-01 100 chrXVI:821656-822090 3.77e-01 100 chrXVI:856798-857121 1.68e-09 44_[-1(5.96e-09)]_26 chrXVI:860129-860692 1.59e-13 14_[+2(1.07e-08)]_24_[-1(1.05e-10)]_\ 2 chrXVI:866311-866695 9.96e-01 100 chrXVI:878849-880543 2.76e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************