******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SOK2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:350628-351060 1.0000 100 chrVIII:455047-456211 1.0000 100 chrXV:24304-25185 1.0000 100 chrVII:364896-366720 1.0000 100 chrXI:463292-463878 1.0000 100 chrI:138980-139335 1.0000 100 chrIV:1468781-1469166 1.0000 100 chrXVI:821605-822385 1.0000 100 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1.0000 100 chrXIV:499739-502772 1.0000 100 chrIII:295361-295783 1.0000 100 chrIV:1450637-1451245 1.0000 100 chrXV:980170-980997 1.0000 100 chrXV:987036-989651 1.0000 100 chrXIII:551377-552365 1.0000 100 chrVII:828501-828958 1.0000 100 chrIV:591711-593369 1.0000 100 chrXV:908469-909199 1.0000 100 chrX:354175-354275 1.0000 100 chrIII:151149-151530 1.0000 100 chrXII:752086-757176 1.0000 100 chrVIII:115932-116291 1.0000 100 chrIX:183313-183672 1.0000 100 chrIX:231213-231654 1.0000 100 chrVII:625008-625756 1.0000 100 chrV:469254-469693 1.0000 100 chrXI:381661-382475 1.0000 100 chrXII:975774-976103 1.0000 100 chrVII:848663-849130 1.0000 100 chrXII:687648-687914 1.0000 100 chrVII:876197-877958 1.0000 100 chrX:115803-115903 1.0000 100 chrXV:216291-216773 1.0000 100 chrIV:1150683-1151186 1.0000 100 chrXV:899985-901621 1.0000 100 chrXIV:631586-632010 1.0000 100 chrV:311386-312280 1.0000 100 chrIV:358132-358402 1.0000 100 chrXV:113520-113874 1.0000 100 chrVIII:21030-21330 1.0000 100 chrXII:390470-391733 1.0000 100 chrVIII:62618-63010 1.0000 100 chrXV:231989-232510 1.0000 100 chrVII:122081-122572 1.0000 100 chrIV:359404-359761 1.0000 100 chrVII:968763-969232 1.0000 100 chrXIII:195960-196300 1.0000 100 chrVI:4576-4754 1.0000 100 chrXIV:585478-586617 1.0000 100 chrXII:643623-650716 1.0000 100 chrXVI:585699-587695 1.0000 100 chrV:85084-86784 1.0000 100 chrXVI:775552-776041 1.0000 100 chrXI:618062-619246 1.0000 100 chrIV:1013689-1014009 1.0000 100 chrIV:1156165-1156643 1.0000 100 chrX:181746-181846 1.0000 100 chrXVI:689404-689832 1.0000 100 chrIX:254218-254617 1.0000 100 chrXIII:253322-253615 1.0000 100 chrVI:157907-158256 1.0000 100 chrI:141690-143657 1.0000 100 chrXI:99144-100174 1.0000 100 chrXIV:239962-240259 1.0000 100 chrXV:348728-349494 1.0000 100 chrXV:281996-282351 1.0000 100 chrX:378181-378281 1.0000 100 chrV:135243-135610 1.0000 100 chrIV:619778-620193 1.0000 100 chrXV:443686-444264 1.0000 100 chrV:140198-141538 1.0000 100 chrVIII:74647-75436 1.0000 100 chrV:288204-288694 1.0000 100 chrI:81892-82258 1.0000 100 chrI:65215-65598 1.0000 100 chrXIII:504693-505186 1.0000 100 chrVI:30522-32323 1.0000 100 chrIII:157440-157964 1.0000 100 chrXV:723060-725746 1.0000 100 chrII:87917-88596 1.0000 100 chrX:197197-197297 1.0000 100 chrXIV:209892-210190 1.0000 100 chrII:405671-406188 1.0000 100 chrXVI:280524-282950 1.0000 100 chrXI:513223-513508 1.0000 100 chrXII:28378-31677 1.0000 100 chrX:293878-293978 1.0000 100 chrVII:878323-879005 1.0000 100 chrXVI:572042-572578 1.0000 100 chrI:71624-73678 1.0000 100 chrIV:1362167-1362722 1.0000 100 chrIV:216950-217661 1.0000 100 chrVII:701472-704531 1.0000 100 chrXV:978498-979554 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SOK2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SOK2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SOK2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.297 C 0.203 G 0.203 T 0.297 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SOK2/background): A 0.304 C 0.196 G 0.196 T 0.304 ******************************************************************************** ******************************************************************************** MOTIF YCDGRAGRTCMBGGGTTCGAYYCCSVK MEME-1 width = 27 sites = 67 llr = 1343 E-value = 1.2e-274 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCDGRAGRTCMBGGGTTCGAYYCCSVK MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::3157142:3::2::::2a1::1:3: pos.-specific C 371::11:17533::::a::36a7641 probability G 23364276::1467a:::8:2:::335 matrix T 5:331:::73:3:1:aa:::44:2::4 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.6 * **** * * Relative 1.4 * * ****** * Entropy 1.2 * * * ****** ** * (28.9 bits) 0.9 * ** * ******** ** * 0.7 * * ****** ******** **** * 0.5 ** ***************** ****** 0.2 ** ***************** ****** 0.0 --------------------------- Multilevel TCAGAAGGTCCGGGGTTCGATCCCCCG consensus CGTTGG A TATCA A CT TGAT sequence G C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDGRAGRTCMBGGGTTCGAYYCCSVK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chrIII:123439-123819 - 6 2.87e-14 CGCTTAGGGT GCGGGAGGTCCCGGGTTCGAGTCCCGG CTCGC chrV:135243-135610 - 57 3.01e-12 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrVII:122081-122572 + 31 3.01e-12 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTAT chrIII:151149-151530 - 3 3.01e-12 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCCCT AC chrV:435608-435924 - 44 3.01e-12 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrIX:300012-300481 - 40 3.01e-12 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTAT chrXVI:581889-582339 + 36 3.01e-12 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrII:405671-406188 + 36 5.61e-12 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrVII:828501-828958 - 52 5.61e-12 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrXIII:747727-748139 - 17 5.61e-12 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGTT chrX:374243-374343 - 68 5.61e-12 TTCTAA TCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrVII:736208-736516 + 65 5.61e-12 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGT chrXIII:131626-132081 - 30 5.61e-12 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrX:115803-115903 - 3 1.35e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCCCG TA chrVII:328396-328920 + 12 1.35e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTT chrIX:370275-370586 + 74 1.35e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCCCG chrXVI:210002-210434 - 32 1.35e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTT chrXIV:374717-375088 + 73 1.35e-11 GGTCAAGTCA TCTGGAGGTCCTGTGTTCGATCCACAG A chrIV:1017004-1017484 - 21 1.35e-11 CACGTTCTCA CCGTGGAGACCGGGGTTCGACTCCCCG CTTCGGAGTT chrVIII:358308-358748 - 8 1.35e-11 GGTCAAGTTA TCTGGAGGTCCTGTGTTCGATCCACAG AATTCGC chrIV:1095125-1095674 - 29 1.35e-11 GGTCAAGATA TCTGGAGGTCCTGTGTTCGATCCACAG AGTTCGCATT chrXVI:622337-622850 - 5 1.35e-11 GGTCAAGTTA TCTGGAGGTCCTGTGTTCGATCCACAG AATT chrXIII:290615-291057 + 52 1.35e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTT chrII:645001-645401 + 53 1.35e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTT chrII:36255-36628 + 63 1.35e-11 GGTCAAGTCA TCTGGAGGTCCTGTGTTCGATCCACAG AATTCGCATT chrXVI:559983-560438 - 46 1.35e-11 GGTCAAGTTA TCTGGAGGTCCTGTGTTCGATCCACAG AATTCGCATT chrIX:183313-183672 - 6 2.67e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCGCT AGAGA chrXVI:880083-880523 - 51 2.67e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATT chrII:197322-197813 + 16 2.67e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATT chrXVI:819342-819849 + 23 2.67e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATT chrXI:578796-579279 + 39 1.87e-10 AGCAAGGATA CCGAAATGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXVI:769051-769458 - 11 1.87e-10 AGCAAGGATA CCGAAATGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrV:469254-469693 + 73 2.09e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTGGG C chrXIII:586500-586868 - 10 2.09e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCAT chrXV:663550-664074 - 58 2.09e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCGTT chrXI:307973-308426 - 3 2.09e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTGGG CG chrVII:823358-823685 + 50 2.09e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCATT chrXIII:372235-372743 - 14 2.09e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCATT chrIII:168184-168521 - 7 2.60e-10 TCGGTTTTGA TCCGGACAACCCCGGTTCGAATCCGGG TAGGAC chrXV:464298-464700 + 68 2.60e-10 GACAAAGCAT GCGAGAGGCCCTGGGTTCAATTCCCAG CTCGCC chrII:350628-351060 + 70 2.60e-10 TCGGTTTTGA TCCGGACAACCCCGGTTCGAATCCGGG TAAG chrII:326577-327061 - 31 2.89e-10 GCCTTTACAC GGCGAAGATCCCGAGTTCGAACCTCGG TTGGATCAAA chrXVI:572042-572578 + 45 5.95e-10 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCGGG CTTGCGCAAT chrX:531625-531725 + 13 5.95e-10 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCGGG CTTGCGCAGT chrVIII:115932-116291 - 54 8.78e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCATT chrXV:353918-354264 - 8 8.78e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCGAT TGGAAGC chrIX:325552-326045 + 38 8.78e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCAAT chrIX:174897-175205 + 68 8.78e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCGAT TGGAAG chrXIII:572614-573131 - 69 1.28e-09 CATAA TCTGAAGGTCGAGAGTTCGAACCTCCC CTGGAGCACA chrX:422719-422819 + 40 1.28e-09 AGTCTCATAA TCTGAAGGTCGAGAGTTCGAACCTCCC CTGGAGCACA chrX:538527-538627 + 22 1.68e-09 TCCCTCCTAA GGAGAAGACTGCGGGTTCGAGTCCCGT ACGGAACGTT chrIV:884295-884652 + 36 5.37e-09 TTAAAAGCAA CGCGACCGTCGTGGGTTCAAACCCCAC CTCGAGCACT chrX:354175-354275 + 27 5.80e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGCCC CCGGGAGATT chrX:542795-542895 - 4 5.80e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGCCC CCG chrXIV:96038-96456 - 52 6.76e-09 CACCCTTCCA AGGTGGGGACACGGGTTCGATTCTCGT ACCGCTCAAA chrVII:730979-731424 + 25 9.76e-09 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrVI:137259-137730 - 50 9.76e-09 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrXI:513223-513508 - 25 1.05e-08 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrVII:531496-531789 + 55 1.05e-08 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrIV:568735-569262 + 53 1.05e-08 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAA chrIV:619778-620193 - 42 1.12e-08 TGGCTACGAA CCAGAAGATTCCAGGTTCAAGTCCTGG CGGGGAAGAT chrXV:340144-340546 - 12 1.12e-08 TGGCTACGAA CCAGAAGATTCCAGGTTCAAGTCCTGG CGGGGAAGAT chrXVI:775552-776041 - 27 1.81e-08 AGATTGCAAA TCTGTTGGTCCTTAGTTCGATCCTGAG TGCGAGCTTT chrXVI:435662-436152 - 44 1.81e-08 AGATTGCAAA TCTGTTGGTCCTTAGTTCGATCCTGAG TGCGAGCTTT chrX:197197-197297 - 18 3.38e-08 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTCCGGA CTCGTCCAAT chrX:415719-415819 - 9 6.61e-08 AAGATTGCAA TCGAAGGGTTGCAGGTTCAATTCCTGT CCGTTTCA chrXVI:744105-744538 + 50 1.20e-07 GCACTTGTAA TGCAAAGGTCGTTAGTTCAATTCTGAC AGGTGGCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDGRAGRTCMBGGGTTCGAYYCCSVK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123439-123819 2.9e-14 5_[-1]_68 chrV:135243-135610 3e-12 56_[-1]_17 chrVII:122081-122572 3e-12 30_[+1]_43 chrIII:151149-151530 3e-12 2_[-1]_71 chrV:435608-435924 3e-12 43_[-1]_30 chrIX:300012-300481 3e-12 39_[-1]_34 chrXVI:581889-582339 3e-12 35_[+1]_38 chrII:405671-406188 5.6e-12 35_[+1]_38 chrVII:828501-828958 5.6e-12 51_[-1]_22 chrXIII:747727-748139 5.6e-12 16_[-1]_57 chrX:374243-374343 5.6e-12 67_[-1]_6 chrVII:736208-736516 5.6e-12 64_[+1]_9 chrXIII:131626-132081 5.6e-12 29_[-1]_44 chrX:115803-115903 1.3e-11 2_[-1]_71 chrVII:328396-328920 1.3e-11 11_[+1]_62 chrIX:370275-370586 1.3e-11 73_[+1] chrXVI:210002-210434 1.3e-11 31_[-1]_42 chrXIV:374717-375088 1.3e-11 72_[+1]_1 chrIV:1017004-1017484 1.3e-11 20_[-1]_53 chrVIII:358308-358748 1.3e-11 7_[-1]_66 chrIV:1095125-1095674 1.3e-11 28_[-1]_45 chrXVI:622337-622850 1.3e-11 4_[-1]_69 chrXIII:290615-291057 1.3e-11 51_[+1]_22 chrII:645001-645401 1.3e-11 52_[+1]_21 chrII:36255-36628 1.3e-11 62_[+1]_11 chrXVI:559983-560438 1.3e-11 45_[-1]_28 chrIX:183313-183672 2.7e-11 5_[-1]_68 chrXVI:880083-880523 2.7e-11 50_[-1]_23 chrII:197322-197813 2.7e-11 15_[+1]_58 chrXVI:819342-819849 2.7e-11 22_[+1]_51 chrXI:578796-579279 1.9e-10 38_[+1]_35 chrXVI:769051-769458 1.9e-10 10_[-1]_63 chrV:469254-469693 2.1e-10 72_[+1]_1 chrXIII:586500-586868 2.1e-10 9_[-1]_64 chrXV:663550-664074 2.1e-10 57_[-1]_16 chrXI:307973-308426 2.1e-10 2_[-1]_71 chrVII:823358-823685 2.1e-10 49_[+1]_24 chrXIII:372235-372743 2.1e-10 13_[-1]_60 chrIII:168184-168521 2.6e-10 6_[-1]_67 chrXV:464298-464700 2.6e-10 67_[+1]_6 chrII:350628-351060 2.6e-10 69_[+1]_4 chrII:326577-327061 2.9e-10 30_[-1]_43 chrXVI:572042-572578 5.9e-10 44_[+1]_29 chrX:531625-531725 5.9e-10 12_[+1]_61 chrVIII:115932-116291 8.8e-10 53_[-1]_20 chrXV:353918-354264 8.8e-10 7_[-1]_66 chrIX:325552-326045 8.8e-10 37_[+1]_36 chrIX:174897-175205 8.8e-10 67_[+1]_6 chrXIII:572614-573131 1.3e-09 68_[-1]_5 chrX:422719-422819 1.3e-09 39_[+1]_34 chrX:538527-538627 1.7e-09 21_[+1]_52 chrIV:884295-884652 5.4e-09 35_[+1]_38 chrX:354175-354275 5.8e-09 26_[+1]_47 chrX:542795-542895 5.8e-09 3_[-1]_70 chrXIV:96038-96456 6.8e-09 51_[-1]_22 chrVII:730979-731424 9.8e-09 24_[+1]_49 chrVI:137259-137730 9.8e-09 49_[-1]_24 chrXI:513223-513508 1e-08 24_[-1]_49 chrVII:531496-531789 1e-08 54_[+1]_19 chrIV:568735-569262 1e-08 52_[+1]_21 chrIV:619778-620193 1.1e-08 41_[-1]_32 chrXV:340144-340546 1.1e-08 11_[-1]_62 chrXVI:775552-776041 1.8e-08 26_[-1]_47 chrXVI:435662-436152 1.8e-08 43_[-1]_30 chrX:197197-197297 3.4e-08 17_[-1]_56 chrX:415719-415819 6.6e-08 8_[-1]_65 chrXVI:744105-744538 1.2e-07 49_[+1]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDGRAGRTCMBGGGTTCGAYYCCSVK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCDGRAGRTCMBGGGTTCGAYYCCSVK width=27 seqs=67 chrIII:123439-123819 ( 6) GCGGGAGGTCCCGGGTTCGAGTCCCGG 1 chrV:135243-135610 ( 57) TCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrVII:122081-122572 ( 31) TCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrIII:151149-151530 ( 3) TCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrV:435608-435924 ( 44) TCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrIX:300012-300481 ( 40) TCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrXVI:581889-582339 ( 36) TCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrII:405671-406188 ( 36) TCAGAAGATTATGGGTTCGACCCCCAT 1 chrVII:828501-828958 ( 52) TCAGAAGATTATGGGTTCGACCCCCAT 1 chrXIII:747727-748139 ( 17) TCAGAAGATTATGGGTTCGACCCCCAT 1 chrX:374243-374343 ( 68) TCAGAAGATTATGGGTTCGACCCCCAT 1 chrVII:736208-736516 ( 65) TCAGAAGATTATGGGTTCGACCCCCAT 1 chrXIII:131626-132081 ( 30) TCAGAAGATTATGGGTTCGACCCCCAT 1 chrX:115803-115903 ( 3) CCGTGGAGACCGGGGTTCGACTCCCCG 1 chrVII:328396-328920 ( 12) CCGTGGAGACCGGGGTTCGACTCCCCG 1 chrIX:370275-370586 ( 74) CCGTGGAGACCGGGGTTCGACTCCCCG 1 chrXVI:210002-210434 ( 32) CCGTGGAGACCGGGGTTCGACTCCCCG 1 chrXIV:374717-375088 ( 73) TCTGGAGGTCCTGTGTTCGATCCACAG 1 chrIV:1017004-1017484 ( 21) CCGTGGAGACCGGGGTTCGACTCCCCG 1 chrVIII:358308-358748 ( 8) TCTGGAGGTCCTGTGTTCGATCCACAG 1 chrIV:1095125-1095674 ( 29) TCTGGAGGTCCTGTGTTCGATCCACAG 1 chrXVI:622337-622850 ( 5) TCTGGAGGTCCTGTGTTCGATCCACAG 1 chrXIII:290615-291057 ( 52) CCGTGGAGACCGGGGTTCGACTCCCCG 1 chrII:645001-645401 ( 53) CCGTGGAGACCGGGGTTCGACTCCCCG 1 chrII:36255-36628 ( 63) TCTGGAGGTCCTGTGTTCGATCCACAG 1 chrXVI:559983-560438 ( 46) TCTGGAGGTCCTGTGTTCGATCCACAG 1 chrIX:183313-183672 ( 6) CGCGGGGATCAGCGGTTCGATCCCGCT 1 chrXVI:880083-880523 ( 51) CGCGGGGATCAGCGGTTCGATCCCGCT 1 chrII:197322-197813 ( 16) CGCGGGGATCAGCGGTTCGATCCCGCT 1 chrXVI:819342-819849 ( 23) CGCGGGGATCAGCGGTTCGATCCCGCT 1 chrXI:578796-579279 ( 39) CCGAAATGTCAGGGGTTCGAGCCCCCT 1 chrXVI:769051-769458 ( 11) CCGAAATGTCAGGGGTTCGAGCCCCCT 1 chrV:469254-469693 ( 73) GCAGAACGTCCCCAGTTCGATCCTGGG 1 chrXIII:586500-586868 ( 10) GCAGAACGTCCCCAGTTCGATCCTGGG 1 chrXV:663550-664074 ( 58) GCAGAACGTCCCCAGTTCGATCCTGGG 1 chrXI:307973-308426 ( 3) GCAGAACGTCCCCAGTTCGATCCTGGG 1 chrVII:823358-823685 ( 50) GCAGAACGTCCCCAGTTCGATCCTGGG 1 chrXIII:372235-372743 ( 14) GCAGAACGTCCCCAGTTCGATCCTGGG 1 chrIII:168184-168521 ( 7) TCCGGACAACCCCGGTTCGAATCCGGG 1 chrXV:464298-464700 ( 68) GCGAGAGGCCCTGGGTTCAATTCCCAG 1 chrII:350628-351060 ( 70) TCCGGACAACCCCGGTTCGAATCCGGG 1 chrII:326577-327061 ( 31) GGCGAAGATCCCGAGTTCGAACCTCGG 1 chrXVI:572042-572578 ( 45) TCGTTGGGCCCCCGGTTCGATTCCGGG 1 chrX:531625-531725 ( 13) TCGTTGGGCCCCCGGTTCGATTCCGGG 1 chrVIII:115932-116291 ( 54) TGTGGAGATCATCGGTTCAAATCCGAT 1 chrXV:353918-354264 ( 8) TGTGGAGATCATCGGTTCAAATCCGAT 1 chrIX:325552-326045 ( 38) TGTGGAGATCATCGGTTCAAATCCGAT 1 chrIX:174897-175205 ( 68) TGTGGAGATCATCGGTTCAAATCCGAT 1 chrXIII:572614-573131 ( 69) TCTGAAGGTCGAGAGTTCGAACCTCCC 1 chrX:422719-422819 ( 40) TCTGAAGGTCGAGAGTTCGAACCTCCC 1 chrX:538527-538627 ( 22) GGAGAAGACTGCGGGTTCGAGTCCCGT 1 chrIV:884295-884652 ( 36) CGCGACCGTCGTGGGTTCAAACCCCAC 1 chrX:354175-354275 ( 27) TCTTGAGATCGGGCGTTCGACTCGCCC 1 chrX:542795-542895 ( 4) TCTTGAGATCGGGCGTTCGACTCGCCC 1 chrXIV:96038-96456 ( 52) AGGTGGGGACACGGGTTCGATTCTCGT 1 chrVII:730979-731424 ( 25) TCGCAAGATCGTGAGTTCAACCCTCAC 1 chrVI:137259-137730 ( 50) TCGCAAGATCGTGAGTTCAACCCTCAC 1 chrXI:513223-513508 ( 25) CGTGCCAGATCGGGGTTCAATTCCCCG 1 chrVII:531496-531789 ( 55) CGTGCCAGATCGGGGTTCAATTCCCCG 1 chrIV:568735-569262 ( 53) CGTGCCAGATCGGGGTTCAATTCCCCG 1 chrIV:619778-620193 ( 42) CCAGAAGATTCCAGGTTCAAGTCCTGG 1 chrXV:340144-340546 ( 12) CCAGAAGATTCCAGGTTCAAGTCCTGG 1 chrXVI:775552-776041 ( 27) TCTGTTGGTCCTTAGTTCGATCCTGAG 1 chrXVI:435662-436152 ( 44) TCTGTTGGTCCTTAGTTCGATCCTGAG 1 chrX:197197-197297 ( 18) GGGAGAGGTCTCCGGTTCGATTCCGGA 1 chrX:415719-415819 ( 9) TCGAAGGGTTGCAGGTTCAATTCCTGT 1 chrXVI:744105-744538 ( 50) TGCAAAGGTCGTTAGTTCAATTCTGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDGRAGRTCMBGGGTTCGAYYCCSVK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 44400 bayes= 11.1302 E= 1.2e-274 -435 53 -25 82 -1271 193 37 -1271 4 -54 46 -10 -176 -271 164 -18 60 -213 114 -235 117 -171 19 -335 -103 -54 181 -335 24 -1271 171 -1271 -65 -171 -1271 129 -1271 187 -1271 -10 17 133 -39 -435 -335 46 87 17 -276 53 168 -276 -54 -271 178 -176 -1271 -1271 235 -1271 -1271 -1271 -1271 172 -1271 -1271 -1271 172 -1271 235 -1271 -1271 -44 -1271 199 -1271 172 -1271 -1271 -1271 -103 37 -13 46 -1271 153 -1271 51 -1271 235 -1271 -1271 -176 175 -271 -44 -1271 168 75 -276 17 99 46 -1271 -435 -71 133 29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDGRAGRTCMBGGGTTCGAYYCCSVK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 67 E= 1.2e-274 0.014925 0.283582 0.164179 0.537313 0.000000 0.746269 0.253731 0.000000 0.313433 0.134328 0.268657 0.283582 0.089552 0.029851 0.611940 0.268657 0.462687 0.044776 0.432836 0.059701 0.686567 0.059701 0.223881 0.029851 0.149254 0.134328 0.686567 0.029851 0.358209 0.000000 0.641791 0.000000 0.194030 0.059701 0.000000 0.746269 0.000000 0.716418 0.000000 0.283582 0.343284 0.492537 0.149254 0.014925 0.029851 0.268657 0.358209 0.343284 0.044776 0.283582 0.626866 0.044776 0.208955 0.029851 0.671642 0.089552 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.223881 0.000000 0.776119 0.000000 1.000000 0.000000 0.000000 0.000000 0.149254 0.253731 0.179104 0.417910 0.000000 0.567164 0.000000 0.432836 0.000000 1.000000 0.000000 0.000000 0.089552 0.656716 0.029851 0.223881 0.000000 0.626866 0.328358 0.044776 0.343284 0.388060 0.268657 0.000000 0.014925 0.119403 0.492537 0.373134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDGRAGRTCMBGGGTTCGAYYCCSVK MEME-1 regular expression -------------------------------------------------------------------------------- [TC][CG][ATG][GT][AG][AG]G[GA]T[CT][CA][GTC][GC][GA]GTTC[GA]A[TC][CT]C[CT][CG][CAG][GT] -------------------------------------------------------------------------------- Time 345.54 secs. ******************************************************************************** ******************************************************************************** MOTIF TTWDNAGTCWGRCGCBYTACC MEME-2 width = 21 sites = 56 llr = 863 E-value = 7.8e-119 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTWDNAGTCWGRCGCBYTACC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:533a1:13151:::::732 pos.-specific C :2113::281118:a44:168 probability G :::33:9:1264:a:31:21: matrix T 98432::8:42:1::35a::: bits 2.4 ** 2.1 ** 1.9 * ** 1.6 ** ** * * Relative 1.4 ** * *** * * Entropy 1.2 ** ** * *** * * (22.2 bits) 0.9 ** **** *** * ** 0.7 ** **** * ****** ** 0.5 *** **** *********** 0.2 *** **** *********** 0.0 --------------------- Multilevel TTATAAGTCTGACGCCTTACC consensus CTAC A G GC A sequence GG T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWDNAGTCWGRCGCBYTACC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrII:405671-406188 - 15 3.76e-10 AATCTTCTGA TTAGAAGTCAGACGCGTTGCC ATTACGCCAC chrVII:828501-828958 + 79 3.76e-10 AATCTTCTGA TTAGAAGTCAGACGCGTTGCC A chrXI:162436-162658 + 25 3.76e-10 AATCTTCTGA TTAGAAGTCAGACGCGTTGCC ATTACGCCAC chrXIII:747727-748139 + 44 3.76e-10 AATCTTCTGA TTAGAAGTCAGACGCGTTGCC ATTACGCCAC chrVII:736208-736516 - 44 3.76e-10 AATCTTCTGA TTAGAAGTCAGACGCGTTGCC ATTACGCCAC chrXIII:131626-132081 + 57 3.76e-10 AATCTTCTGA TTAGAAGTCAGACGCGTTGCC ATTACGCCAC chrVII:122081-122572 - 10 7.42e-10 AACCTTATGA TTAAGAGTCATACGCGCTACC GATTGCGCC chrIII:151149-151530 + 30 7.42e-10 AACCTTATGA TTAAGAGTCATACGCGCTACC GATTGCGCCA chrV:435608-435924 + 71 7.42e-10 AACCTTATGA TTAAGAGTCATACGCGCTACC GATTGCGCC chrIX:300012-300481 + 67 7.42e-10 AACCTTATGA TTAAGAGTCATACGCGCTACC GATTGCGCCA chrIV:1201538-1201975 - 61 7.42e-10 AACCTTATGA TTAAGAGTCATACGCGCTACC GATTGCGCCA chrXVI:581889-582339 - 15 7.42e-10 AACCTTATGA TTAAGAGTCATACGCGCTACC GATTGCGCCA chrXIII:352071-352507 - 58 1.63e-09 CCGAAGTATT TCTTCAGTCTGGCGCTCTCCC AACTGAGCTA chrXIV:374717-375088 - 34 1.63e-09 CCGAAGTTTT TCTTCAGTCTGGCGCTCTCCC AACTGAGCTA chrVIII:358308-358748 + 54 1.63e-09 CGAAGTTTTT TCTTCAGTCTGGCGCTCTCCC AACTGAGCTA chrIV:1095125-1095674 + 75 1.63e-09 CAAAGTTTTT TCTTCAGTCTGGCGCTCTCCC AACTG chrXVI:622337-622850 + 51 1.63e-09 CGAAGTTTTT TCTTCAGTCTGGCGCTCTCCC AACTGAGCTA chrVIII:237752-238077 + 38 1.63e-09 CGAAGTTTTT TCTTCAGTCTGGCGCTCTCCC AACTGAGCTA chrII:36255-36628 - 24 1.63e-09 CCGAAGTTTT TCTTCAGTCTGGCGCTCTCCC AACTGAGCTA chrXV:353918-354264 + 35 3.34e-09 GATCTCCACA TTACTAGTGTGGCGCCTTACC AACTTGGCCA chrIX:325552-326045 - 17 3.34e-09 GATCTCCACA TTACTAGTGTGGCGCCTTACC AACTTGGCCA chrIX:174897-175205 - 47 3.34e-09 GATCTCCACA TTACTAGTGTGGCGCCTTACC AACTTGGCCA chrIV:359404-359761 - 62 1.34e-08 GCAAATGCGC TTAAAAGCCGAACGCTCTACC AACTGAGCTA chrVII:115262-115706 - 71 1.34e-08 CAAATGCGC TTAAAAGCCGAACGCTCTACC AACTGAGCTA chrVII:730979-731424 - 4 1.34e-08 GATCTTGCGA TTAACAGTCGCACGCCTTAAC CAA chrIII:127550-127907 - 56 1.34e-08 GATCTTGCGA TTAACAGTCGCACGCCTTAAC CAACTTGGCC chrVI:137259-137730 + 77 1.34e-08 GATCTTGCGA TTAACAGTCGCACGCCTTAAC CAA chrXVI:769051-769458 + 61 1.34e-08 GCAAATGCGC TTAAAAGCCGAACGCTCTACC AACTGAGCTA chrXVI:689404-689832 - 14 2.61e-08 GCCCAACAGA TTTCAAGTCTGTCGCCTTAAC CACTCGGCCA chrX:538527-538627 - 1 6.50e-08 AGTCTTCTCC TTAGGAGGGAGACGCGTTACC chrVII:661543-661969 - 59 7.15e-08 GACCTTTGCA TTACAAGTGCAACGCTCTACC ACTAAGCTAA chrXVI:744105-744538 - 29 7.15e-08 GACCTTTGCA TTACAAGTGCAACGCTCTACC ACTAAGCTAA chrIII:149738-150120 - 57 9.45e-08 GACATCAGGG TTATGAGCCCTGCGCGCTTCC ACTGCGCCAC chrXVI:775552-776041 + 54 1.24e-07 GACCAACAGA TTTGCAATCTGCTGCGCTACC ACTGCGCCAT chrXVI:435662-436152 + 71 1.24e-07 GACCAACAGA TTTGCAATCTGCTGCGCTACC ACTGCGCCA chrXI:84024-84406 - 61 1.35e-07 GTCCAACAGA TCTTAAGTCTGCCGCCTTAGA CCACTCGGCC chrIV:519659-519904 - 30 1.35e-07 GTCCAACAGA TCTTAAGTCTGCCGCCTTAGA CCACTCGGCC chrX:424277-424377 + 32 1.35e-07 GTCCAACAGA TCTTAAGTCTGCCGCCTTAGA CCACTCGGCC chrVI:210519-210898 + 10 1.90e-07 TAGTGGTAA ATTACAGTCTTGCGCCTTAAA CCAACTTGGC chrXIII:837760-838124 - 55 1.90e-07 GTAGTGGTAA ATTACAGTCTTGCGCCTTAAA CCAACTTGGC chrX:542795-542895 + 45 1.90e-07 GTAGTGATAA ATTACAGTCTTGCGCCTTAAA CCAACTTGGC chrIV:619778-620193 + 69 2.24e-07 AATCTTCTGG TTCGTAGCCAGACGCCGTGAC CATTGGGCCA chrX:233754-233854 - 68 2.24e-07 AATCTCCTGG TTCGTAGCCAGACGCCGTGAC CATTGGGCCA chrXV:340144-340546 + 39 2.24e-07 AATCTTCTGG TTCGTAGCCAGACGCCGTGAC CATTGGGCCA chrX:422719-422819 - 19 2.42e-07 GACCTTCAGA TTATGAGACTGACGCTCTTCC TACTGAGCTA chrXIII:504693-505186 - 24 3.31e-07 TCAAGATATT TCTTGAATCAGGCGCCTTAGA CCGCTCGGCC chrVII:422911-423372 - 19 3.31e-07 TCAAGATATT TCTTGAATCAGGCGCCTTAGA CCGCTCGGCC chrX:415719-415819 + 70 4.47e-07 CCAAGATTTA ATTGGAGTCGAAAGCTCTACC ATTGAGCCAC chrXI:302694-303207 - 34 4.47e-07 CCAAGATTTA ATTGGAGTCGAAAGCTCTACC ATTGAGCCAC chrVII:287237-287656 + 23 4.47e-07 CCAAGATTTA ATTGGAGTCGAAAGCTCTACC ATTGAGCCAC chrIX:183313-183672 + 33 6.37e-07 GATCCCCGCG TTATTAGCACGGTGCCTTAAC CAACTGGGCC chrXVI:880083-880523 + 78 6.37e-07 GATCCCCGCG TTATTAGCACGGTGCCTTAAC CA chrXIV:602082-602548 - 65 6.37e-07 GATCCCCGCG TTATTAGCACGGTGCCTTAAC CAACTGGGCC chrXVI:819342-819849 - 2 6.37e-07 GATCCCCGCG TTATTAGCACGGTGCCTTAAC C chrIV:437564-438045 - 35 1.01e-06 GCCCAAAAGA TTTCTAATCTTTCGCCTTAAC CACTCGGCCA chrX:617730-617830 - 67 1.74e-06 GGTTAAATCC ACCTAAATCTGACGCCTTAAA CCACTCGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWDNAGTCWGRCGCBYTACC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:405671-406188 3.8e-10 14_[-2]_65 chrVII:828501-828958 3.8e-10 78_[+2]_1 chrXI:162436-162658 3.8e-10 24_[+2]_55 chrXIII:747727-748139 3.8e-10 43_[+2]_36 chrVII:736208-736516 3.8e-10 43_[-2]_36 chrXIII:131626-132081 3.8e-10 56_[+2]_23 chrVII:122081-122572 7.4e-10 9_[-2]_70 chrIII:151149-151530 7.4e-10 29_[+2]_50 chrV:435608-435924 7.4e-10 70_[+2]_9 chrIX:300012-300481 7.4e-10 66_[+2]_13 chrIV:1201538-1201975 7.4e-10 60_[-2]_19 chrXVI:581889-582339 7.4e-10 14_[-2]_65 chrXIII:352071-352507 1.6e-09 57_[-2]_22 chrXIV:374717-375088 1.6e-09 33_[-2]_46 chrVIII:358308-358748 1.6e-09 53_[+2]_26 chrIV:1095125-1095674 1.6e-09 74_[+2]_5 chrXVI:622337-622850 1.6e-09 50_[+2]_29 chrVIII:237752-238077 1.6e-09 37_[+2]_42 chrII:36255-36628 1.6e-09 23_[-2]_56 chrXV:353918-354264 3.3e-09 34_[+2]_45 chrIX:325552-326045 3.3e-09 16_[-2]_63 chrIX:174897-175205 3.3e-09 46_[-2]_33 chrIV:359404-359761 1.3e-08 61_[-2]_18 chrVII:115262-115706 1.3e-08 70_[-2]_9 chrVII:730979-731424 1.3e-08 3_[-2]_76 chrIII:127550-127907 1.3e-08 55_[-2]_24 chrVI:137259-137730 1.3e-08 76_[+2]_3 chrXVI:769051-769458 1.3e-08 60_[+2]_19 chrXVI:689404-689832 2.6e-08 13_[-2]_66 chrX:538527-538627 6.5e-08 [-2]_79 chrVII:661543-661969 7.1e-08 58_[-2]_21 chrXVI:744105-744538 7.1e-08 28_[-2]_51 chrIII:149738-150120 9.4e-08 56_[-2]_23 chrXVI:775552-776041 1.2e-07 53_[+2]_26 chrXVI:435662-436152 1.2e-07 70_[+2]_9 chrXI:84024-84406 1.4e-07 60_[-2]_19 chrIV:519659-519904 1.4e-07 29_[-2]_50 chrX:424277-424377 1.4e-07 31_[+2]_48 chrVI:210519-210898 1.9e-07 9_[+2]_70 chrXIII:837760-838124 1.9e-07 54_[-2]_25 chrX:542795-542895 1.9e-07 44_[+2]_35 chrIV:619778-620193 2.2e-07 68_[+2]_11 chrX:233754-233854 2.2e-07 67_[-2]_12 chrXV:340144-340546 2.2e-07 38_[+2]_41 chrX:422719-422819 2.4e-07 18_[-2]_61 chrXIII:504693-505186 3.3e-07 23_[-2]_56 chrVII:422911-423372 3.3e-07 18_[-2]_61 chrX:415719-415819 4.5e-07 69_[+2]_10 chrXI:302694-303207 4.5e-07 33_[-2]_46 chrVII:287237-287656 4.5e-07 22_[+2]_57 chrIX:183313-183672 6.4e-07 32_[+2]_47 chrXVI:880083-880523 6.4e-07 77_[+2]_2 chrXIV:602082-602548 6.4e-07 64_[-2]_15 chrXVI:819342-819849 6.4e-07 1_[-2]_78 chrIV:437564-438045 1e-06 34_[-2]_45 chrX:617730-617830 1.7e-06 66_[-2]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWDNAGTCWGRCGCBYTACC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTWDNAGTCWGRCGCBYTACC width=21 seqs=56 chrII:405671-406188 ( 15) TTAGAAGTCAGACGCGTTGCC 1 chrVII:828501-828958 ( 79) TTAGAAGTCAGACGCGTTGCC 1 chrXI:162436-162658 ( 25) TTAGAAGTCAGACGCGTTGCC 1 chrXIII:747727-748139 ( 44) TTAGAAGTCAGACGCGTTGCC 1 chrVII:736208-736516 ( 44) TTAGAAGTCAGACGCGTTGCC 1 chrXIII:131626-132081 ( 57) TTAGAAGTCAGACGCGTTGCC 1 chrVII:122081-122572 ( 10) TTAAGAGTCATACGCGCTACC 1 chrIII:151149-151530 ( 30) TTAAGAGTCATACGCGCTACC 1 chrV:435608-435924 ( 71) TTAAGAGTCATACGCGCTACC 1 chrIX:300012-300481 ( 67) TTAAGAGTCATACGCGCTACC 1 chrIV:1201538-1201975 ( 61) TTAAGAGTCATACGCGCTACC 1 chrXVI:581889-582339 ( 15) TTAAGAGTCATACGCGCTACC 1 chrXIII:352071-352507 ( 58) TCTTCAGTCTGGCGCTCTCCC 1 chrXIV:374717-375088 ( 34) TCTTCAGTCTGGCGCTCTCCC 1 chrVIII:358308-358748 ( 54) TCTTCAGTCTGGCGCTCTCCC 1 chrIV:1095125-1095674 ( 75) TCTTCAGTCTGGCGCTCTCCC 1 chrXVI:622337-622850 ( 51) TCTTCAGTCTGGCGCTCTCCC 1 chrVIII:237752-238077 ( 38) TCTTCAGTCTGGCGCTCTCCC 1 chrII:36255-36628 ( 24) TCTTCAGTCTGGCGCTCTCCC 1 chrXV:353918-354264 ( 35) TTACTAGTGTGGCGCCTTACC 1 chrIX:325552-326045 ( 17) TTACTAGTGTGGCGCCTTACC 1 chrIX:174897-175205 ( 47) TTACTAGTGTGGCGCCTTACC 1 chrIV:359404-359761 ( 62) TTAAAAGCCGAACGCTCTACC 1 chrVII:115262-115706 ( 71) TTAAAAGCCGAACGCTCTACC 1 chrVII:730979-731424 ( 4) TTAACAGTCGCACGCCTTAAC 1 chrIII:127550-127907 ( 56) TTAACAGTCGCACGCCTTAAC 1 chrVI:137259-137730 ( 77) TTAACAGTCGCACGCCTTAAC 1 chrXVI:769051-769458 ( 61) TTAAAAGCCGAACGCTCTACC 1 chrXVI:689404-689832 ( 14) TTTCAAGTCTGTCGCCTTAAC 1 chrX:538527-538627 ( 1) TTAGGAGGGAGACGCGTTACC 1 chrVII:661543-661969 ( 59) TTACAAGTGCAACGCTCTACC 1 chrXVI:744105-744538 ( 29) TTACAAGTGCAACGCTCTACC 1 chrIII:149738-150120 ( 57) TTATGAGCCCTGCGCGCTTCC 1 chrXVI:775552-776041 ( 54) TTTGCAATCTGCTGCGCTACC 1 chrXVI:435662-436152 ( 71) TTTGCAATCTGCTGCGCTACC 1 chrXI:84024-84406 ( 61) TCTTAAGTCTGCCGCCTTAGA 1 chrIV:519659-519904 ( 30) TCTTAAGTCTGCCGCCTTAGA 1 chrX:424277-424377 ( 32) TCTTAAGTCTGCCGCCTTAGA 1 chrVI:210519-210898 ( 10) ATTACAGTCTTGCGCCTTAAA 1 chrXIII:837760-838124 ( 55) ATTACAGTCTTGCGCCTTAAA 1 chrX:542795-542895 ( 45) ATTACAGTCTTGCGCCTTAAA 1 chrIV:619778-620193 ( 69) TTCGTAGCCAGACGCCGTGAC 1 chrX:233754-233854 ( 68) TTCGTAGCCAGACGCCGTGAC 1 chrXV:340144-340546 ( 39) TTCGTAGCCAGACGCCGTGAC 1 chrX:422719-422819 ( 19) TTATGAGACTGACGCTCTTCC 1 chrXIII:504693-505186 ( 24) TCTTGAATCAGGCGCCTTAGA 1 chrVII:422911-423372 ( 19) TCTTGAATCAGGCGCCTTAGA 1 chrX:415719-415819 ( 70) ATTGGAGTCGAAAGCTCTACC 1 chrXI:302694-303207 ( 34) ATTGGAGTCGAAAGCTCTACC 1 chrVII:287237-287656 ( 23) ATTGGAGTCGAAAGCTCTACC 1 chrIX:183313-183672 ( 33) TTATTAGCACGGTGCCTTAAC 1 chrXVI:880083-880523 ( 78) TTATTAGCACGGTGCCTTAAC 1 chrXIV:602082-602548 ( 65) TTATTAGCACGGTGCCTTAAC 1 chrXVI:819342-819849 ( 2) TTATTAGCACGGTGCCTTAAC 1 chrIV:437564-438045 ( 35) TTTCTAATCTTTCGCCTTAAC 1 chrX:617730-617830 ( 67) ACCTAAATCTGACGCCTTAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWDNAGTCWGRCGCBYTACC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.348 E= 7.8e-119 -128 -1245 -1245 152 -1245 25 -1245 134 82 -145 -1245 37 -18 -65 45 16 -9 45 35 -63 172 -1245 -1245 -1245 -151 -1245 219 -1245 -409 0 -345 134 -209 207 -87 -1245 8 -65 -28 37 -109 -187 163 -63 77 -113 87 -309 -250 210 -1245 -151 -1245 -1245 235 -1245 -1245 235 -1245 -1245 -1245 113 55 -9 -1245 119 -187 72 -1245 -1245 -1245 172 116 -65 -28 -309 -9 167 -113 -1245 -92 210 -1245 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWDNAGTCWGRCGCBYTACC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 56 E= 7.8e-119 0.125000 0.000000 0.000000 0.875000 0.000000 0.232143 0.000000 0.767857 0.535714 0.071429 0.000000 0.392857 0.267857 0.125000 0.267857 0.339286 0.285714 0.267857 0.250000 0.196429 1.000000 0.000000 0.000000 0.000000 0.107143 0.000000 0.892857 0.000000 0.017857 0.196429 0.017857 0.767857 0.071429 0.821429 0.107143 0.000000 0.321429 0.125000 0.160714 0.392857 0.142857 0.053571 0.607143 0.196429 0.517857 0.089286 0.357143 0.035714 0.053571 0.839286 0.000000 0.107143 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.285714 0.285714 0.000000 0.446429 0.053571 0.500000 0.000000 0.000000 0.000000 1.000000 0.678571 0.125000 0.160714 0.035714 0.285714 0.625000 0.089286 0.000000 0.160714 0.839286 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTWDNAGTCWGRCGCBYTACC MEME-2 regular expression -------------------------------------------------------------------------------- T[TC][AT][TAG][ACG]AGTC[TA]G[AG]CGC[CGT][TC]TA[CA]C -------------------------------------------------------------------------------- Time 662.89 secs. ******************************************************************************** ******************************************************************************** MOTIF GGKCNHGTGGTSTAGTSGKTW MEME-3 width = 21 sites = 26 llr = 502 E-value = 4.5e-070 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGKCNHGTGGTSTAGTSGKTW MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::232:2::::a:::::35 pos.-specific C :21723::::251:::4:::: probability G a75:3:8:8a:31:a:6a4:: matrix T :15334:a::828::a::674 bits 2.4 * * * * 2.1 * * * * 1.9 * * * * 1.6 * *** ** * Relative 1.4 * **** ***** Entropy 1.2 ** * ***** ***** (27.8 bits) 0.9 ** * ***** ******** 0.7 **** ************** 0.5 **** *************** 0.2 **** **************** 0.0 --------------------- Multilevel GGGCTTGTGGTCTAGTGGTTA consensus TTGA G C GAT sequence CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCNHGTGGTSTAGTSGKTW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIII:195960-196300 - 70 1.18e-11 AAGTTCACAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXV:464298-464700 + 1 1.18e-11 . GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrI:138980-139335 + 45 1.18e-11 CAATTAGTAC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrX:197197-197297 - 62 7.04e-11 AATAATATTA GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrVIII:145934-146746 - 4 7.04e-11 ACAAATATCA GGGCGTGTGGCGTAGTCGGTA GCG chrXIII:321066-321421 - 6 7.04e-11 AATACAAATC GGGCGTGTGGCGTAGTCGGTA GCGCG chrX:378181-378281 + 45 1.89e-10 TAAATTAATA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrV:469254-469693 + 34 1.89e-10 AGAAATAATT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXIII:586500-586868 - 55 1.89e-10 AACTTACTAT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXI:307973-308426 - 48 1.89e-10 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrVII:823358-823685 + 11 1.89e-10 CAATAAGAGT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXIII:372235-372743 - 59 1.89e-10 AATAAAACCT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrV:438513-438883 + 52 1.89e-10 CAACAAATTA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrIII:123439-123819 - 49 1.18e-09 TTTCAAAGGA GGGCGTGTGGTCTAGAGGTAT GATTCTCGCT chrXVI:572042-572578 + 9 1.54e-09 AATACTTC GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXV:281996-282351 + 41 1.54e-09 ACATGAAAGC GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrVI:162036-162374 + 73 1.54e-09 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAA chrVII:930893-931142 - 36 1.54e-09 TAATCAGTAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrIII:168184-168521 - 50 2.54e-09 AAGAAGTCCT GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrXIII:808144-808508 - 21 2.54e-09 AGAAGAAAAA GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrVIII:134082-134514 + 73 2.54e-09 AGTAAGTTCC GGTCCTATAGTGTAGTGGTTA TCACTTT chrXV:594316-594581 - 7 3.95e-09 TGATTGAAAC GCGCAAGTGGTTCAGTGGTTA GAATTT chrII:350628-351060 + 33 7.12e-09 TCAATAAAAG GGTTTTATAGTGTAGTGGTTA TCACTTTCGG chrII:326577-327061 - 76 8.49e-09 TCCG GGTCCAATGGTCCAGTGGTTC AAGACGTCGC chrIV:1150683-1151186 - 37 1.43e-08 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTTA AGGCGATGCC chrXV:274491-274948 + 4 1.43e-08 CGT GTCCCAGTGGCCGAGTGGTTA AGGCGATGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCNHGTGGTSTAGTSGKTW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:195960-196300 1.2e-11 69_[-3]_10 chrXV:464298-464700 1.2e-11 [+3]_79 chrI:138980-139335 1.2e-11 44_[+3]_35 chrX:197197-197297 7e-11 61_[-3]_18 chrVIII:145934-146746 7e-11 3_[-3]_76 chrXIII:321066-321421 7e-11 5_[-3]_74 chrX:378181-378281 1.9e-10 44_[+3]_35 chrV:469254-469693 1.9e-10 33_[+3]_46 chrXIII:586500-586868 1.9e-10 54_[-3]_25 chrXI:307973-308426 1.9e-10 47_[-3]_32 chrVII:823358-823685 1.9e-10 10_[+3]_69 chrXIII:372235-372743 1.9e-10 58_[-3]_21 chrV:438513-438883 1.9e-10 51_[+3]_28 chrIII:123439-123819 1.2e-09 48_[-3]_31 chrXVI:572042-572578 1.5e-09 8_[+3]_71 chrXV:281996-282351 1.5e-09 40_[+3]_39 chrVI:162036-162374 1.5e-09 72_[+3]_7 chrVII:930893-931142 1.5e-09 35_[-3]_44 chrIII:168184-168521 2.5e-09 49_[-3]_30 chrXIII:808144-808508 2.5e-09 20_[-3]_59 chrVIII:134082-134514 2.5e-09 72_[+3]_7 chrXV:594316-594581 4e-09 6_[-3]_73 chrII:350628-351060 7.1e-09 32_[+3]_47 chrII:326577-327061 8.5e-09 75_[-3]_4 chrIV:1150683-1151186 1.4e-08 36_[-3]_43 chrXV:274491-274948 1.4e-08 3_[+3]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCNHGTGGTSTAGTSGKTW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGKCNHGTGGTSTAGTSGKTW width=21 seqs=26 chrXIII:195960-196300 ( 70) GGGCGTGTGGTCTAGTGGTAT 1 chrXV:464298-464700 ( 1) GGGCGTGTGGTCTAGTGGTAT 1 chrI:138980-139335 ( 45) GGGCGTGTGGTCTAGTGGTAT 1 chrX:197197-197297 ( 62) GGGCGTGTGGCGTAGTCGGTA 1 chrVIII:145934-146746 ( 4) GGGCGTGTGGCGTAGTCGGTA 1 chrXIII:321066-321421 ( 6) GGGCGTGTGGCGTAGTCGGTA 1 chrX:378181-378281 ( 45) GGTTTCGTGGTCTAGTCGGTT 1 chrV:469254-469693 ( 34) GGTTTCGTGGTCTAGTCGGTT 1 chrXIII:586500-586868 ( 55) GGTTTCGTGGTCTAGTCGGTT 1 chrXI:307973-308426 ( 48) GGTTTCGTGGTCTAGTCGGTT 1 chrVII:823358-823685 ( 11) GGTTTCGTGGTCTAGTCGGTT 1 chrXIII:372235-372743 ( 59) GGTTTCGTGGTCTAGTCGGTT 1 chrV:438513-438883 ( 52) GGTTTCGTGGTCTAGTCGGTT 1 chrIII:123439-123819 ( 49) GGGCGTGTGGTCTAGAGGTAT 1 chrXVI:572042-572578 ( 9) GCGCAAGTGGTTTAGTGGTAA 1 chrXV:281996-282351 ( 41) GCGCAAGTGGTTTAGTGGTAA 1 chrVI:162036-162374 ( 73) GCGCAAGTGGTTTAGTGGTAA 1 chrVII:930893-931142 ( 36) GCGCAAGTGGTTTAGTGGTAA 1 chrIII:168184-168521 ( 50) GGTCCTATAGTGTAGTGGTTA 1 chrXIII:808144-808508 ( 21) GGTCCTATAGTGTAGTGGTTA 1 chrVIII:134082-134514 ( 73) GGTCCTATAGTGTAGTGGTTA 1 chrXV:594316-594581 ( 7) GCGCAAGTGGTTCAGTGGTTA 1 chrII:350628-351060 ( 33) GGTTTTATAGTGTAGTGGTTA 1 chrII:326577-327061 ( 76) GGTCCAATGGTCCAGTGGTTC 1 chrIV:1150683-1151186 ( 37) GTCCCAGTGGCCGAGTGGTTA 1 chrXV:274491-274948 ( 4) GTCCCAGTGGCCGAGTGGTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCNHGTGGTSTAGTSGKTW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 11.3803 E= 4.5e-070 -1134 -1134 235 -1134 -1134 -3 190 -198 -1134 -135 124 60 -1134 182 -1134 2 -66 24 46 2 2 46 -1134 48 -66 -1134 204 -1134 -1134 -1134 -1134 172 -98 -1134 211 -1134 -1134 -1134 235 -1134 -1134 -3 -1134 141 -1134 146 46 -66 -1134 -135 -135 148 172 -1134 -1134 -1134 -1134 -1134 235 -1134 -298 -1134 -1134 166 -1134 97 165 -1134 -1134 -1134 235 -1134 -1134 -1134 97 102 2 -1134 -1134 119 82 -235 -1134 48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCNHGTGGTSTAGTSGKTW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 26 E= 4.5e-070 0.000000 0.000000 1.000000 0.000000 0.000000 0.192308 0.730769 0.076923 0.000000 0.076923 0.461538 0.461538 0.000000 0.692308 0.000000 0.307692 0.192308 0.230769 0.269231 0.307692 0.307692 0.269231 0.000000 0.423077 0.192308 0.000000 0.807692 0.000000 0.000000 0.000000 0.000000 1.000000 0.153846 0.000000 0.846154 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.192308 0.000000 0.807692 0.000000 0.538462 0.269231 0.192308 0.000000 0.076923 0.076923 0.846154 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.038462 0.000000 0.000000 0.961538 0.000000 0.384615 0.615385 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.384615 0.615385 0.307692 0.000000 0.000000 0.692308 0.538462 0.038462 0.000000 0.423077 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCNHGTGGTSTAGTSGKTW MEME-3 regular expression -------------------------------------------------------------------------------- GG[GT][CT][TGC][TAC]GTGGT[CG]TAGT[GC]G[TG][TA][AT] -------------------------------------------------------------------------------- Time 982.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:350628-351060 7.09e-12 32_[+3(7.12e-09)]_16_[+1(2.60e-10)]_\ 4 chrVIII:455047-456211 9.81e-01 100 chrXV:24304-25185 5.61e-01 100 chrVII:364896-366720 4.83e-01 100 chrXI:463292-463878 3.48e-02 26_[-1(5.71e-05)]_47 chrI:138980-139335 3.10e-08 44_[+3(1.18e-11)]_35 chrIV:1468781-1469166 9.07e-01 100 chrXVI:821605-822385 6.82e-01 100 chrXIII:433531-433770 1.39e-01 100 chrVII:700434-701155 5.27e-01 100 chrVII:544412-544867 8.49e-01 100 chrXI:630457-630873 2.63e-01 100 chrIV:689786-690837 6.77e-01 100 chrIII:137876-139004 6.00e-01 100 chrXVI:435662-436152 1.42e-08 43_[-1(1.81e-08)]_[+2(1.24e-07)]_9 chrIV:1161507-1162360 3.38e-01 100 chrXII:96099-96331 8.02e-01 100 chrV:23398-23963 3.16e-01 100 chrXIV:495199-495597 6.79e-01 100 chrIV:1055484-1056357 2.02e-01 100 chrXII:421582-426627 7.86e-01 100 chrV:18765-19229 3.49e-01 100 chrII:266237-266698 7.41e-01 100 chrXII:46834-49982 3.10e-01 100 chrXVI:256623-257315 4.84e-01 100 chrVII:556029-558014 8.84e-01 100 chrXV:758878-759499 6.89e-01 100 chrXII:207737-211848 3.75e-01 100 chrVIII:16465-18523 9.77e-01 100 chrXV:842378-842954 6.14e-01 100 chrXII:1006420-1011327 9.80e-01 100 chrV:176930-177443 1.29e-01 100 chrXVI:581889-582339 2.22e-14 14_[-2(7.42e-10)]_[+1(3.01e-12)]_38 chrII:415503-415887 3.67e-01 100 chrIV:835846-836358 7.57e-01 100 chrXV:670829-671629 7.18e-01 100 chrIV:1011653-1011998 1.93e-01 100 chrXIII:556891-558027 9.98e-01 100 chrVII:310509-312492 8.85e-01 100 chrXII:689136-698492 9.97e-01 100 chrI:28165-28952 8.90e-01 100 chrXI:7786-8258 7.60e-01 100 chrVII:440678-441191 7.92e-01 100 chrX:90098-90198 7.87e-01 100 chrXII:789335-791937 8.49e-01 100 chrXIII:145936-146374 6.41e-01 100 chrXIV:96038-96456 2.25e-05 51_[-1(6.76e-09)]_22 chrXIV:715916-716670 4.73e-02 100 chrII:251185-251828 7.02e-01 100 chrXVI:769051-769458 6.15e-12 10_[-1(1.87e-10)]_23_[+2(1.34e-08)]_\ 19 chrXII:958371-961783 8.82e-01 100 chrIX:174897-175205 3.87e-14 46_[-2(3.34e-09)]_[+1(8.78e-10)]_6 chrXV:594316-594581 5.10e-05 6_[-3(3.95e-09)]_73 chrXIII:131626-132081 2.41e-17 29_[-1(5.61e-12)]_[+2(3.76e-10)]_23 chrVIII:54454-56367 4.61e-01 100 chrXII:123677-125347 8.09e-01 100 chrX:538527-538627 2.01e-10 [-2(6.50e-08)]_[+1(1.68e-09)]_52 chrVII:205323-206998 3.57e-01 100 chrXVI:340223-341133 3.21e-01 100 chrVI:224396-225725 4.09e-01 100 chrXI:578796-579279 1.37e-07 38_[+1(1.87e-10)]_35 chrXII:758632-760525 1.17e-01 100 chrXII:174489-179603 1.62e-01 100 chrXI:282801-284972 2.90e-01 100 chrV:305823-306913 7.38e-01 100 chrIV:1086898-1087342 6.17e-01 100 chrVII:384031-385055 9.78e-02 100 chrXIII:282754-283426 5.44e-03 100 chrXIII:872709-872952 2.98e-01 100 chrII:662333-662805 8.28e-01 100 chrXII:518037-527738 6.90e-01 100 chrVIII:134082-134514 2.21e-06 72_[+3(2.54e-09)]_7 chrXI:333811-334974 9.19e-01 100 chrXII:105658-109363 8.86e-01 100 chrXII:867149-871425 2.18e-01 100 chrIII:90797-91103 7.75e-02 100 chrV:377778-379040 2.21e-01 100 chrXII:426800-432001 3.75e-02 100 chrIV:1201538-1201975 1.58e-07 60_[-2(7.42e-10)]_19 chrXII:251297-256408 9.31e-01 100 chrVII:397916-398462 3.30e-01 100 chrXVI:559983-560438 4.76e-08 45_[-1(1.35e-11)]_28 chrVI:191306-191736 4.47e-02 100 chrXIV:632507-632894 1.64e-01 100 chrVII:1000048-1000680 4.08e-01 100 chrXII:415819-418078 5.08e-01 100 chrII:45015-45357 6.26e-01 100 chrXII:817102-817286 6.78e-03 100 chrXV:976384-976713 9.57e-01 100 chrVIII:236061-236776 2.28e-01 100 chrVII:287237-287656 1.05e-03 22_[+2(4.47e-07)]_5_[-2(5.20e-05)]_\ 31 chrIII:141980-142947 9.98e-02 100 chrXV:1053974-1054584 9.88e-01 100 chrIV:322454-323589 9.48e-01 100 chrXV:167995-168419 5.39e-01 100 chrVII:882418-884360 4.69e-01 100 chrXVI:338744-339196 4.58e-01 100 chrXII:566488-573791 2.42e-02 17_[+3(1.44e-05)]_62 chrXVI:819342-819849 9.81e-11 1_[-2(6.37e-07)]_[+1(2.67e-11)]_51 chrX:73393-73493 7.25e-01 100 chrVI:95480-95961 3.43e-01 100 chrII:36255-36628 4.00e-14 23_[-2(1.63e-09)]_18_[+1(1.35e-11)]_\ 11 chrXVI:591075-591565 4.41e-02 100 chrXII:928514-933707 2.44e-01 100 chrXII:385739-390299 3.88e-01 100 chrXVI:744105-744538 2.24e-10 28_[-2(7.15e-08)]_[+1(1.20e-07)]_24 chrIV:366136-366471 9.75e-03 100 chrXVI:927684-928568 2.81e-01 100 chrXII:948110-958163 9.39e-01 100 chrXV:109320-110660 9.44e-01 100 chrII:332352-332724 8.58e-01 100 chrIX:197431-197972 1.64e-01 57_[-3(8.54e-05)]_22 chrIV:520753-521106 1.14e-01 100 chrVII:147953-149474 8.12e-01 100 chrV:66642-69553 5.86e-01 100 chrXVI:930464-931094 6.27e-01 100 chrXV:520372-521166 5.75e-01 100 chrXII:828565-830581 6.34e-01 100 chrIX:177525-178237 3.82e-01 100 chrXV:391143-392516 4.78e-01 100 chrIV:437564-438045 1.72e-06 34_[-2(1.01e-06)]_45 chrXIII:431381-432516 5.59e-01 100 chrVIII:401039-401308 4.75e-01 100 chrIV:579058-580902 7.32e-01 100 chrV:431045-431888 7.54e-01 100 chrI:190180-192070 4.83e-02 100 chrXV:1025713-1026064 3.15e-01 100 chrII:391504-391895 9.45e-01 100 chrXV:866582-867040 7.22e-01 100 chrX:744987-745087 2.93e-01 100 chrVII:794262-794503 4.49e-01 100 chrX:542795-542895 1.37e-09 3_[-1(5.80e-09)]_14_[+2(1.90e-07)]_\ 35 chrXII:602234-607570 9.46e-01 100 chrXII:288562-291928 7.02e-01 100 chrII:645001-645401 4.16e-08 52_[+1(1.35e-11)]_21 chrI:166177-166582 3.24e-01 100 chrXIV:351060-353058 3.27e-01 100 chrIV:1305422-1306045 7.09e-01 100 chrVII:706906-707187 9.87e-01 100 chrII:197322-197813 4.29e-07 15_[+1(2.67e-11)]_58 chrXI:518534-521226 5.40e-01 100 chrV:241950-243141 3.81e-01 100 chrXII:95490-95892 8.36e-01 100 chrXV:673657-674065 3.65e-01 100 chrX:540743-540843 3.96e-01 100 chrIV:992699-993134 4.05e-06 1_[+1(5.95e-10)]_72 chrVII:648843-649330 4.09e-01 100 chrII:370899-371858 3.56e-01 100 chrXI:302694-303207 1.06e-03 7_[+2(6.16e-05)]_5_[-2(4.47e-07)]_\ 46 chrVIII:132912-133330 2.15e-03 15_[-3(4.71e-06)]_64 chrXIII:808144-808508 1.35e-05 20_[-3(2.54e-09)]_59 chrVIII:103561-104248 7.55e-01 100 chrXIII:321066-321421 3.45e-07 5_[-3(7.04e-11)]_74 chrXII:910254-928253 9.77e-01 100 chrVIII:411024-411749 6.62e-01 100 chrV:221223-221927 4.92e-01 100 chrVII:736208-736516 2.41e-17 43_[-2(3.76e-10)]_[+1(5.61e-12)]_9 chrX:227692-227792 1.31e-01 100 chrIV:357127-357772 5.51e-01 100 chrXII:444431-451150 7.61e-01 100 chrVIII:149001-149225 1.62e-01 100 chrXIII:161886-164343 7.74e-01 100 chrVI:131223-131828 7.34e-01 100 chrVII:405468-405807 7.02e-01 100 chrIV:543594-543975 5.28e-01 100 chrXII:396858-407751 8.03e-01 100 chrIV:76861-77181 3.22e-02 100 chrVIII:237752-238077 1.39e-06 37_[+2(1.63e-09)]_42 chrX:652013-652113 6.75e-01 100 chrIV:599665-600368 2.76e-01 100 chrX:355224-355324 5.54e-01 100 chrXV:161098-162018 2.25e-01 100 chrXI:614889-615411 2.86e-01 100 chrXIII:914713-915751 2.99e-01 100 chrIV:568735-569262 3.46e-05 52_[+1(1.05e-08)]_21 chrXIV:546595-547369 7.76e-01 100 chrX:531625-531725 7.67e-06 12_[+1(5.95e-10)]_61 chrIV:1236542-1238009 1.30e-01 100 chrX:453314-453414 2.01e-01 100 chrVI:106438-106872 1.77e-01 100 chrXII:793286-802451 7.62e-01 100 chrXVI:840202-841128 6.95e-01 100 chrV:438513-438883 1.62e-06 51_[+3(1.89e-10)]_28 chrVIII:289419-289808 1.33e-01 100 chrIV:490491-492605 6.32e-02 20_[+1(7.92e-05)]_53 chrII:375964-377276 1.47e-01 41_[-2(9.59e-05)]_38 chrXI:229913-231761 9.79e-01 100 chrXV:92757-94767 3.39e-01 100 chrX:424277-424377 8.33e-06 31_[+2(1.35e-07)]_48 chrXII:576768-585509 5.17e-01 100 chrIX:141729-142896 8.69e-01 100 chrVII:1079813-1080038 3.48e-01 100 chrXII:727665-731536 8.99e-01 100 chrIII:190-1232 5.94e-01 100 chrXVI:188597-189094 1.34e-01 100 chrIV:1461487-1461837 5.23e-01 100 chrXIV:776648-777185 4.26e-01 100 chrIX:300012-300481 2.22e-14 39_[-1(3.01e-12)]_[+2(7.42e-10)]_13 chrVIII:296742-297247 8.45e-01 100 chrX:422719-422819 1.04e-12 18_[-2(2.42e-07)]_[+1(1.28e-09)]_34 chrXV:27912-28107 5.27e-01 100 chrXIII:651431-653811 1.18e-01 100 chrXII:988765-1000114 3.37e-01 100 chrXIV:442870-443846 9.90e-01 100 chrIV:1402140-1403419 5.40e-01 100 chrIV:1355724-1355995 9.88e-01 100 chrV:490898-491763 9.83e-01 100 chrX:374243-374343 3.23e-08 67_[-1(5.61e-12)]_6 chrI:197931-199105 1.81e-01 100 chrXIV:503097-503432 4.93e-01 100 chrIV:234181-234685 7.18e-01 100 chrXII:783118-786265 8.60e-01 100 chrIX:138133-139413 9.31e-01 100 chrXII:339132-343766 4.94e-01 100 chrXV:259303-260005 3.65e-01 100 chrII:167893-168222 3.63e-01 100 chrV:335504-336540 2.57e-01 100 chrXVI:404161-406040 8.76e-01 100 chrXII:92217-95171 5.79e-01 100 chrXV:234215-234929 5.79e-01 100 chrXIII:408007-409181 4.70e-01 100 chrXI:143101-143442 3.52e-01 100 chrIV:541176-541933 3.86e-01 100 chrIV:410230-410451 8.16e-01 100 chrIX:323949-324540 8.02e-01 100 chrIV:1080371-1081025 1.42e-01 100 chrVI:137259-137730 3.23e-10 49_[-1(9.76e-09)]_[+2(1.34e-08)]_3 chrXII:656823-657744 7.07e-01 100 chrVII:277039-277398 6.77e-01 100 chrXII:837558-840595 8.29e-01 100 chrVII:533736-535168 9.48e-01 100 chrXV:903733-904826 6.66e-01 100 chrVII:609328-611500 9.93e-01 100 chrXV:770111-770535 1.50e-01 100 chrXII:230760-236021 3.17e-01 100 chrV:6231-6688 1.45e-02 100 chrXII:1050655-1052731 3.11e-01 100 chrVII:422911-423372 1.60e-05 18_[-2(3.31e-07)]_61 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56_[-1(3.01e-12)]_17 chrIV:619778-620193 1.26e-09 41_[-1(1.12e-08)]_[+2(2.24e-07)]_11 chrXV:443686-444264 7.54e-01 100 chrV:140198-141538 2.11e-01 100 chrVIII:74647-75436 4.18e-01 100 chrV:288204-288694 4.10e-01 100 chrI:81892-82258 2.89e-01 100 chrI:65215-65598 9.87e-01 100 chrXIII:504693-505186 1.60e-05 23_[-2(3.31e-07)]_56 chrVI:30522-32323 8.72e-01 100 chrIII:157440-157964 9.00e-01 100 chrXV:723060-725746 5.37e-01 100 chrII:87917-88596 7.89e-01 100 chrX:197197-197297 8.42e-13 17_[-1(3.38e-08)]_17_[-3(7.04e-11)]_\ 18 chrXIV:209892-210190 8.12e-01 100 chrII:405671-406188 1.39e-14 14_[-2(3.76e-10)]_[+1(5.61e-12)]_38 chrXVI:280524-282950 6.97e-01 100 chrXI:513223-513508 3.83e-05 24_[-1(1.05e-08)]_49 chrXII:28378-31677 7.40e-01 100 chrX:293878-293978 7.27e-01 100 chrVII:878323-879005 7.00e-01 100 chrXVI:572042-572578 3.80e-12 8_[+3(1.54e-09)]_15_[+1(5.95e-10)]_\ 29 chrI:71624-73678 2.96e-01 100 chrIV:1362167-1362722 6.87e-01 100 chrIV:216950-217661 1.27e-01 100 chrVII:701472-704531 6.28e-01 100 chrXV:978498-979554 3.91e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************