******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SMP1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71713-73269 1.0000 100 chrI:81857-82344 1.0000 100 chrI:138942-139361 1.0000 100 chrI:166171-166593 1.0000 100 chrI:202516-203192 1.0000 100 chrII:9468-9857 1.0000 100 chrII:36233-36637 1.0000 100 chrII:44258-45391 1.0000 100 chrII:45573-46807 1.0000 100 chrII:60686-61823 1.0000 100 chrII:87948-88574 1.0000 100 chrII:89571-90386 1.0000 100 chrII:165093-165429 1.0000 100 chrII:167907-169517 1.0000 100 chrII:181256-181756 1.0000 100 chrII:197162-197847 1.0000 100 chrII:226970-227337 1.0000 100 chrII:266172-266686 1.0000 100 chrII:326474-327206 1.0000 100 chrII:332171-333008 1.0000 100 chrII:347398-347927 1.0000 100 chrII:350574-351042 1.0000 100 chrII:405663-406216 1.0000 100 chrII:415475-415895 1.0000 100 chrII:477020-477750 1.0000 100 chrII:592821-593301 1.0000 100 chrII:594962-595418 1.0000 100 chrII:604068-607106 1.0000 100 chrII:642885-643081 1.0000 100 chrII:644964-645428 1.0000 100 chrIII:79-1264 1.0000 100 chrIII:8748-9166 1.0000 100 chrIII:11080-11554 1.0000 100 chrIII:32017-33329 1.0000 100 chrIII:90781-91103 1.0000 100 chrIII:123375-123788 1.0000 100 chrIII:127518-127902 1.0000 100 chrIII:137808-138974 1.0000 100 chrIII:142137-143144 1.0000 100 chrIII:149714-150226 1.0000 100 chrIII:151129-151586 1.0000 100 chrIII:163429-163912 1.0000 100 chrIII:168113-168534 1.0000 100 chrIII:177254-178709 1.0000 100 chrIII:227723-228215 1.0000 100 chrIII:293694-294709 1.0000 100 chrIII:295337-295935 1.0000 100 chrIII:308621-308984 1.0000 100 chrIII:316228-316597 1.0000 100 chrIV:83349-83897 1.0000 100 chrIV:117147-118179 1.0000 100 chrIV:118444-118845 1.0000 100 chrIV:129764-131020 1.0000 100 chrIV:216580-217715 1.0000 100 chrIV:221629-222358 1.0000 100 chrIV:229442-230499 1.0000 100 chrIV:307983-309345 1.0000 100 chrIV:321677-321970 1.0000 100 chrIV:340991-341957 1.0000 100 chrIV:358044-358490 1.0000 100 chrIV:359324-359814 1.0000 100 chrIV:410216-410833 1.0000 100 chrIV:411212-411674 1.0000 100 chrIV:412081-413045 1.0000 100 chrIV:434051-435121 1.0000 100 chrIV:437550-438010 1.0000 100 chrIV:488473-488989 1.0000 100 chrIV:489659-491303 1.0000 100 chrIV:519654-519946 1.0000 100 chrIV:520642-521180 1.0000 100 chrIV:538840-539355 1.0000 100 chrIV:568528-569320 1.0000 100 chrIV:578943-580657 1.0000 100 chrIV:601197-602358 1.0000 100 chrIV:619760-620240 1.0000 100 chrIV:667722-668596 1.0000 100 chrIV:757469-758384 1.0000 100 chrIV:802586-802839 1.0000 100 chrIV:835854-836313 1.0000 100 chrIV:884284-884625 1.0000 100 chrIV:945641-946618 1.0000 100 chrIV:992676-993220 1.0000 100 chrIV:1013673-1013990 1.0000 100 chrIV:1016983-1017524 1.0000 100 chrIV:1075306-1075745 1.0000 100 chrIV:1095167-1095686 1.0000 100 chrIV:1150707-1151155 1.0000 100 chrIV:1166231-1166742 1.0000 100 chrIV:1175592-1176073 1.0000 100 chrIV:1200938-1201972 1.0000 100 chrIV:1236523-1237933 1.0000 100 chrIV:1300731-1301400 1.0000 100 chrIV:1305375-1307143 1.0000 100 chrIV:1307300-1307515 1.0000 100 chrIV:1352304-1353110 1.0000 100 chrIV:1354414-1356104 1.0000 100 chrIV:1359349-1360817 1.0000 100 chrIV:1401036-1401885 1.0000 100 chrIV:1450633-1451915 1.0000 100 chrIV:1461201-1461850 1.0000 100 chrIV:1489124-1489840 1.0000 100 chrIX:68160-68954 1.0000 100 chrIX:83672-84838 1.0000 100 chrIX:99597-100142 1.0000 100 chrIX:174659-175683 1.0000 100 chrIX:183294-183698 1.0000 100 chrIX:197305-197854 1.0000 100 chrIX:210658-210938 1.0000 100 chrIX:248514-249014 1.0000 100 chrIX:254192-254560 1.0000 100 chrIX:257361-257918 1.0000 100 chrIX:299997-300672 1.0000 100 chrIX:315977-318258 1.0000 100 chrIX:323387-324590 1.0000 100 chrIX:325548-326018 1.0000 100 chrIX:335963-336646 1.0000 100 chrIX:370255-370602 1.0000 100 chrIX:380075-380926 1.0000 100 chrIX:426685-427135 1.0000 100 chrIX:427339-427884 1.0000 100 chrV:6195-6767 1.0000 100 chrV:53460-53971 1.0000 100 chrV:61172-62135 1.0000 100 chrV:69102-69309 1.0000 100 chrV:77541-79421 1.0000 100 chrV:85104-86252 1.0000 100 chrV:86420-86781 1.0000 100 chrV:99705-100284 1.0000 100 chrV:117578-118311 1.0000 100 chrV:130978-131369 1.0000 100 chrV:135217-136081 1.0000 100 chrV:138469-140920 1.0000 100 chrV:176835-177405 1.0000 100 chrV:207360-207523 1.0000 100 chrV:249788-250531 1.0000 100 chrV:270370-270670 1.0000 100 chrV:288189-288752 1.0000 100 chrV:305427-307410 1.0000 100 chrV:311740-312293 1.0000 100 chrV:354790-355288 1.0000 100 chrV:362129-362540 1.0000 100 chrV:362737-363287 1.0000 100 chrV:396134-397939 1.0000 100 chrV:423081-423610 1.0000 100 chrV:431037-431922 1.0000 100 chrV:434401-435128 1.0000 100 chrV:435341-435946 1.0000 100 chrV:438512-438960 1.0000 100 chrV:441869-442689 1.0000 100 chrV:443058-443340 1.0000 100 chrV:469258-469899 1.0000 100 chrV:470115-470370 1.0000 100 chrV:486693-487664 1.0000 100 chrV:492244-492425 1.0000 100 chrV:550938-551572 1.0000 100 chrVI:4526-4770 1.0000 100 chrVI:64154-65636 1.0000 100 chrVI:82480-84740 1.0000 100 chrVI:95409-95925 1.0000 100 chrVI:97677-98100 1.0000 100 chrVI:101368-101863 1.0000 100 chrVI:137206-137810 1.0000 100 chrVI:157903-158263 1.0000 100 chrVI:162013-162401 1.0000 100 chrVI:167275-167696 1.0000 100 chrVI:180684-181712 1.0000 100 chrVI:191255-191749 1.0000 100 chrVI:210454-211155 1.0000 100 chrVI:220476-222158 1.0000 100 chrVI:223263-224156 1.0000 100 chrVI:226508-226947 1.0000 100 chrVII:792-2084 1.0000 100 chrVII:110265-110788 1.0000 100 chrVII:115266-115730 1.0000 100 chrVII:122062-122518 1.0000 100 chrVII:148193-149549 1.0000 100 chrVII:185535-185937 1.0000 100 chrVII:205073-205770 1.0000 100 chrVII:254131-254701 1.0000 100 chrVII:255193-255644 1.0000 100 chrVII:276987-278346 1.0000 100 chrVII:287165-287733 1.0000 100 chrVII:310398-312098 1.0000 100 chrVII:319256-320072 1.0000 100 chrVII:328388-329261 1.0000 100 chrVII:364887-366621 1.0000 100 chrVII:371194-371517 1.0000 100 chrVII:401430-401620 1.0000 100 chrVII:405461-405808 1.0000 100 chrVII:411691-412593 1.0000 100 chrVII:422877-423352 1.0000 100 chrVII:437325-437927 1.0000 100 chrVII:438540-439814 1.0000 100 chrVII:440554-441013 1.0000 100 chrVII:479221-482754 1.0000 100 chrVII:531402-531803 1.0000 100 chrVII:533850-535198 1.0000 100 chrVII:541710-542150 1.0000 100 chrVII:544413-544924 1.0000 100 chrVII:555162-556687 1.0000 100 chrVII:561451-561708 1.0000 100 chrVII:648766-649358 1.0000 100 chrVII:661491-661989 1.0000 100 chrVII:700369-701158 1.0000 100 chrVII:706940-707195 1.0000 100 chrVII:726388-728071 1.0000 100 chrVII:730956-731395 1.0000 100 chrVII:736190-736919 1.0000 100 chrVII:738639-739477 1.0000 100 chrVII:774137-774652 1.0000 100 chrVII:779358-779761 1.0000 100 chrVII:787985-788736 1.0000 100 chrVII:794084-794559 1.0000 100 chrVII:823355-823715 1.0000 100 chrVII:828353-829002 1.0000 100 chrVII:845396-846255 1.0000 100 chrVII:856737-857707 1.0000 100 chrVII:876165-878078 1.0000 100 chrVII:878584-879110 1.0000 100 chrVII:882783-883894 1.0000 100 chrVII:919911-920249 1.0000 100 chrVII:930796-931143 1.0000 100 chrVII:1000367-1000583 1.0000 100 chrVII:1003998-1004407 1.0000 100 chrVII:1057327-1059646 1.0000 100 chrVIII:17741-18057 1.0000 100 chrVIII:34561-35118 1.0000 100 chrVIII:35292-36297 1.0000 100 chrVIII:62479-62987 1.0000 100 chrVIII:74969-75885 1.0000 100 chrVIII:103730-104363 1.0000 100 chrVIII:115861-116299 1.0000 100 chrVIII:125879-126341 1.0000 100 chrVIII:132566-133344 1.0000 100 chrVIII:134073-134723 1.0000 100 chrVIII:144772-146797 1.0000 100 chrVIII:148919-149243 1.0000 100 chrVIII:174620-176349 1.0000 100 chrVIII:237674-238090 1.0000 100 chrVIII:296819-297274 1.0000 100 chrVIII:310448-311251 1.0000 100 chrVIII:358316-358822 1.0000 100 chrVIII:382247-383361 1.0000 100 chrVIII:388702-389209 1.0000 100 chrVIII:451341-452964 1.0000 100 chrVIII:466971-467169 1.0000 100 chrVIII:475514-475901 1.0000 100 chrVIII:505800-506223 1.0000 100 chrVIII:555718-556541 1.0000 100 chrX:59010-59388 1.0000 100 chrX:73107-76489 1.0000 100 chrX:89568-90461 1.0000 100 chrX:115804-116248 1.0000 100 chrX:123553-124507 1.0000 100 chrX:157407-157923 1.0000 100 chrX:160044-160252 1.0000 100 chrX:197166-197521 1.0000 100 chrX:204521-205002 1.0000 100 chrX:233690-234184 1.0000 100 chrX:354159-354586 1.0000 100 chrX:355204-355758 1.0000 100 chrX:374236-374850 1.0000 100 chrX:378137-378597 1.0000 100 chrX:390853-391612 1.0000 100 chrX:391822-392130 1.0000 100 chrX:396516-397025 1.0000 100 chrX:414497-415239 1.0000 100 chrX:415706-416294 1.0000 100 chrX:422689-423361 1.0000 100 chrX:424287-424721 1.0000 100 chrX:517680-518108 1.0000 100 chrX:523790-524410 1.0000 100 chrX:531563-532226 1.0000 100 chrX:538523-538818 1.0000 100 chrX:540948-541965 1.0000 100 chrX:542783-543652 1.0000 100 chrX:545401-545744 1.0000 100 chrX:607530-608155 1.0000 100 chrX:608327-609065 1.0000 100 chrX:617695-618151 1.0000 100 chrX:651264-651616 1.0000 100 chrX:652023-652597 1.0000 100 chrX:690548-690869 1.0000 100 chrX:702972-703678 1.0000 100 chrX:745079-745750 1.0000 100 chrXI:773-1087 1.0000 100 chrXI:46713-46998 1.0000 100 chrXI:67794-68048 1.0000 100 chrXI:74427-74826 1.0000 100 chrXI:84017-84430 1.0000 100 chrXI:99748-99982 1.0000 100 chrXI:108401-110140 1.0000 100 chrXI:140774-141314 1.0000 100 chrXI:141685-143399 1.0000 100 chrXI:158169-159348 1.0000 100 chrXI:162429-162679 1.0000 100 chrXI:163466-164348 1.0000 100 chrXI:202286-203259 1.0000 100 chrXI:219553-220102 1.0000 100 chrXI:258458-258941 1.0000 100 chrXI:259136-259843 1.0000 100 chrXI:260435-260853 1.0000 100 chrXI:302673-303230 1.0000 100 chrXI:307980-308425 1.0000 100 chrXI:313235-313975 1.0000 100 chrXI:326451-327512 1.0000 100 chrXI:333632-334842 1.0000 100 chrXI:379452-379917 1.0000 100 chrXI:382186-382463 1.0000 100 chrXI:430920-431669 1.0000 100 chrXI:457574-459003 1.0000 100 chrXI:490731-491213 1.0000 100 chrXI:512631-513515 1.0000 100 chrXI:517380-518173 1.0000 100 chrXI:518905-520667 1.0000 100 chrXI:578687-579296 1.0000 100 chrXI:618744-619386 1.0000 100 chrXI:644914-645858 1.0000 100 chrXI:666596-666794 1.0000 100 chrXII:5560-5805 1.0000 100 chrXII:48695-49177 1.0000 100 chrXII:92345-92841 1.0000 100 chrXII:167736-168281 1.0000 100 chrXII:201715-202627 1.0000 100 chrXII:214713-215069 1.0000 100 chrXII:231961-234131 1.0000 100 chrXII:241614-243426 1.0000 100 chrXII:260962-263960 1.0000 100 chrXII:281928-282306 1.0000 100 chrXII:350977-351584 1.0000 100 chrXII:366035-366582 1.0000 100 chrXII:368748-370229 1.0000 100 chrXII:370518-371098 1.0000 100 chrXII:374196-374667 1.0000 100 chrXII:424183-424498 1.0000 100 chrXII:426917-427464 1.0000 100 chrXII:448505-448990 1.0000 100 chrXII:459576-460759 1.0000 100 chrXII:498487-499735 1.0000 100 chrXII:521495-522459 1.0000 100 chrXII:592177-592723 1.0000 100 chrXII:605159-605639 1.0000 100 chrXII:627719-627887 1.0000 100 chrXII:628145-629115 1.0000 100 chrXII:636702-639938 1.0000 100 chrXII:656840-657212 1.0000 100 chrXII:673512-675003 1.0000 100 chrXII:687669-687852 1.0000 100 chrXII:713138-713620 1.0000 100 chrXII:728295-728564 1.0000 100 chrXII:732010-732307 1.0000 100 chrXII:734598-735603 1.0000 100 chrXII:780804-781894 1.0000 100 chrXII:783904-784513 1.0000 100 chrXII:793732-795294 1.0000 100 chrXII:796358-797795 1.0000 100 chrXII:805985-806831 1.0000 100 chrXII:809756-815341 1.0000 100 chrXII:818502-820271 1.0000 100 chrXII:837724-839373 1.0000 100 chrXII:874894-876375 1.0000 100 chrXII:897662-899067 1.0000 100 chrXII:902899-904769 1.0000 100 chrXII:921725-922611 1.0000 100 chrXII:932047-932521 1.0000 100 chrXII:962816-963277 1.0000 100 chrXII:975798-976103 1.0000 100 chrXII:1017534-1017819 1.0000 100 chrXII:1018120-1019580 1.0000 100 chrXII:1028189-1028625 1.0000 100 chrXII:1051944-1052220 1.0000 100 chrXII:1064006-1064169 1.0000 100 chrXIII:91423-92111 1.0000 100 chrXIII:131592-132117 1.0000 100 chrXIII:145873-146318 1.0000 100 chrXIII:168245-169007 1.0000 100 chrXIII:195929-196308 1.0000 100 chrXIII:224064-224389 1.0000 100 chrXIII:225158-226628 1.0000 100 chrXIII:259034-259460 1.0000 100 chrXIII:290565-291060 1.0000 100 chrXIII:296796-298878 1.0000 100 chrXIII:302883-303108 1.0000 100 chrXIII:320985-321586 1.0000 100 chrXIII:352093-352531 1.0000 100 chrXIII:362944-363958 1.0000 100 chrXIII:372245-372746 1.0000 100 chrXIII:378892-379630 1.0000 100 chrXIII:420355-420857 1.0000 100 chrXIII:463426-463849 1.0000 100 chrXIII:480386-480925 1.0000 100 chrXIII:499202-500698 1.0000 100 chrXIII:504645-505222 1.0000 100 chrXIII:551032-551846 1.0000 100 chrXIII:572612-573248 1.0000 100 chrXIII:586428-587220 1.0000 100 chrXIII:650802-651120 1.0000 100 chrXIII:731554-733583 1.0000 100 chrXIII:747748-748142 1.0000 100 chrXIII:748299-749082 1.0000 100 chrXIII:753011-754973 1.0000 100 chrXIII:768194-768448 1.0000 100 chrXIII:808114-808511 1.0000 100 chrXIII:837709-838208 1.0000 100 chrXIII:859518-860283 1.0000 100 chrXIV:61957-64272 1.0000 100 chrXIV:96020-96467 1.0000 100 chrXIV:102583-103046 1.0000 100 chrXIV:104581-105135 1.0000 100 chrXIV:173317-174609 1.0000 100 chrXIV:240891-242017 1.0000 100 chrXIV:253193-253917 1.0000 100 chrXIV:302623-303797 1.0000 100 chrXIV:330440-332520 1.0000 100 chrXIV:374664-375083 1.0000 100 chrXIV:442862-445590 1.0000 100 chrXIV:493912-495618 1.0000 100 chrXIV:499300-499487 1.0000 100 chrXIV:499696-500695 1.0000 100 chrXIV:518112-519134 1.0000 100 chrXIV:546539-547437 1.0000 100 chrXIV:560322-560790 1.0000 100 chrXIV:568053-568427 1.0000 100 chrXIV:569655-570051 1.0000 100 chrXIV:576700-577520 1.0000 100 chrXIV:585516-586254 1.0000 100 chrXIV:602063-602546 1.0000 100 chrXIV:631639-632015 1.0000 100 chrXIV:632496-632833 1.0000 100 chrXIV:725621-726358 1.0000 100 chrXIV:783704-784331 1.0000 100 chrXV:79720-80171 1.0000 100 chrXV:92817-94811 1.0000 100 chrXV:109542-110650 1.0000 100 chrXV:110857-111710 1.0000 100 chrXV:113501-113881 1.0000 100 chrXV:161099-161748 1.0000 100 chrXV:167967-168456 1.0000 100 chrXV:216272-216746 1.0000 100 chrXV:226447-226884 1.0000 100 chrXV:228056-228630 1.0000 100 chrXV:253797-254118 1.0000 100 chrXV:274466-274986 1.0000 100 chrXV:281757-282918 1.0000 100 chrXV:287156-288399 1.0000 100 chrXV:300862-301701 1.0000 100 chrXV:340142-340716 1.0000 100 chrXV:353912-354320 1.0000 100 chrXV:438415-439463 1.0000 100 chrXV:444652-446321 1.0000 100 chrXV:464282-465088 1.0000 100 chrXV:487432-487724 1.0000 100 chrXV:504933-505550 1.0000 100 chrXV:571609-572227 1.0000 100 chrXV:594307-594628 1.0000 100 chrXV:639205-639783 1.0000 100 chrXV:663503-664071 1.0000 100 chrXV:678242-679181 1.0000 100 chrXV:710073-710489 1.0000 100 chrXV:779635-780956 1.0000 100 chrXV:797110-798418 1.0000 100 chrXV:854031-854788 1.0000 100 chrXV:866507-867911 1.0000 100 chrXV:881249-882378 1.0000 100 chrXV:901409-901627 1.0000 100 chrXV:968113-968475 1.0000 100 chrXV:976380-976697 1.0000 100 chrXV:978789-979182 1.0000 100 chrXV:979726-981284 1.0000 100 chrXV:986731-987560 1.0000 100 chrXV:1004077-1004915 1.0000 100 chrXV:1025711-1026507 1.0000 100 chrXV:1027928-1029659 1.0000 100 chrXVI:55904-56350 1.0000 100 chrXVI:75488-77039 1.0000 100 chrXVI:188599-188971 1.0000 100 chrXVI:210024-210462 1.0000 100 chrXVI:279986-280210 1.0000 100 chrXVI:281621-282164 1.0000 100 chrXVI:302467-304506 1.0000 100 chrXVI:338752-339306 1.0000 100 chrXVI:378649-379014 1.0000 100 chrXVI:404568-405992 1.0000 100 chrXVI:406181-408271 1.0000 100 chrXVI:432585-434345 1.0000 100 chrXVI:435690-436196 1.0000 100 chrXVI:520010-520550 1.0000 100 chrXVI:559998-560459 1.0000 100 chrXVI:571997-572515 1.0000 100 chrXVI:581853-582284 1.0000 100 chrXVI:622365-622864 1.0000 100 chrXVI:689333-689847 1.0000 100 chrXVI:699622-700687 1.0000 100 chrXVI:731875-733130 1.0000 100 chrXVI:744078-744558 1.0000 100 chrXVI:768981-769488 1.0000 100 chrXVI:775643-776124 1.0000 100 chrXVI:785502-787252 1.0000 100 chrXVI:794458-795048 1.0000 100 chrXVI:810576-811010 1.0000 100 chrXVI:819318-819782 1.0000 100 chrXVI:856814-857105 1.0000 100 chrXVI:860149-860640 1.0000 100 chrXVI:879425-880537 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SMP1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SMP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SMP1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 504 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 50400 N= 504 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--SMP1/background): A 0.309 C 0.191 G 0.191 T 0.309 ******************************************************************************** ******************************************************************************** MOTIF SGGRRTCGAACCSVGGACCTYM MEME-1 width = 22 sites = 77 llr = 1337 E-value = 2.0e-256 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGGRRTCGAACCSVGGACCTYM MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2:55:::aa:1:3:26::114 pos.-specific C 4:::1:8:::a7632:176354 probability G 67a52::a::::44581:11:1 matrix T :1::2a2::::2::3:232642 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * ** * * Relative 1.4 * ****** * Entropy 1.2 * * ****** * * (25.1 bits) 1.0 **** ******** * * 0.7 **** ******** * ** 0.5 **** **************** 0.2 ********************** 0.0 ---------------------- Multilevel GGGAATCGAACCCGGGACCTCC consensus CA GG T TGAT T CTA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRRTCGAACCSVGGACCTYM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chrIII:123375-123788 + 56 4.20e-13 GGGGCGAGCC GGGACTCGAACCCGGGACCTCC CGCACCCTAA chrXVI:819318-819782 - 71 4.82e-11 GTCTCTAG CGGGATCGAACCGCTGATCCCC GCGTTATTAG chrXII:1051944-1052220 + 49 4.82e-11 TGGTCTCTAG CGGGATCGAACCGCTGATCCCC GCGTTATTAG chrV:443058-443340 + 63 4.82e-11 TGGTCTCTAG CGGGATCGAACCGCTGATCCCC GCGTTATTAG chrIX:183294-183698 + 4 4.82e-11 TAG CGGGATCGAACCGCTGATCCCC GCGTTATTAG chrXVI:210024-210462 + 9 1.45e-10 CCGATACG GGGAGTCGAACCCCGGTCTCCA CGGTGAAAGC chrXIII:290565-291060 - 79 1.45e-10 . GGGAGTCGAACCCCGGTCTCCA CGGTGAAAGC chrXII:214713-215069 + 52 1.45e-10 TGGACGCAAC CGGAATCGAACCGATGACCTCT TCCTTGCAAG chrXI:140774-141314 + 34 1.45e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCCA CGGTGAAAGC chrVII:541710-542150 - 10 1.45e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCCA CGGTGAAAG chrVII:401430-401620 + 62 1.45e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCCA CGGTGAAAGC chrV:311740-312293 + 67 1.45e-10 TGGACGCAAC CGGAATCGAACCGATGACCTCT TCCTTGCAAG chrV:176835-177405 - 69 1.45e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCCA CGGTGAAAGC chrIX:370255-370602 - 79 1.45e-10 . GGGAGTCGAACCCCGGTCTCCA CGGTGAAAGC chrIV:1016983-1017524 + 14 1.45e-10 CTCCGAAGCG GGGAGTCGAACCCCGGTCTCCA CGGTGAGAAC chrII:644964-645428 - 61 1.45e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCCA CGGTGAAAGC chrXIV:96020-96467 + 58 3.41e-10 TGAGCGGTAC GAGAATCGAACCCGTGTCCCCA CCTTGGAAGG chrVIII:475514-475901 + 59 3.90e-10 TGTTCCAACC GAGGATCGAACTCGGGACCTTT GCCGTGTGAA chrIV:1075306-1075745 + 7 3.90e-10 CCAACC GAGGATCGAACTCGGGACCTTT GCCGTGTGAA chrXIII:195929-196308 + 10 5.11e-10 GGGCGAGCT GGGAATTGAACCCAGGGCCTCT CGCATGCTTT chrXII:92345-92841 - 76 5.11e-10 GCT GGGAATTGAACCCAGGGCCTCT CGCATGCTTT chrXIII:480386-480925 + 26 6.63e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTTA TGATTAAGAG chrVII:185535-185937 + 38 6.63e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTTA TGATTAAGAG chrVII:122062-122518 - 70 6.63e-10 GCCCTGTAG GGGGCTCGAACCCCTAACCTTA TGATTAAGAG chrVI:226508-226947 + 21 6.63e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTTA TGATTAAGAG chrXVI:860149-860640 - 74 7.54e-10 AAGCC CGGAATCGAACCGGGGGCCCAA CGATGGCAAC chrXV:226447-226884 + 6 7.54e-10 AAGCC CGGAATCGAACCGGGGGCCCAA CGATGGCAAC chrX:531563-532226 - 23 7.54e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCAA CGATGGCAAC chrX:396516-397025 + 16 7.54e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCAA CGATGGCAAC chrVII:930796-931143 + 44 7.54e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCAA CGATGGCAAC chrIV:83349-83897 - 14 7.54e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCAA CGATGGCAAC chrXVI:856814-857105 - 34 8.56e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTCT CCCATGCTAA chrXIII:747748-748142 + 7 8.56e-10 CACGAT GGGGGTCGAACCCATAATCTTC TGATTAGAAG chrXIII:131592-132117 + 31 8.56e-10 CACTCACGAT GGGGGTCGAACCCATAATCTTC TGATTAGAAG chrX:374236-374850 + 23 8.56e-10 CACTCACGAT GGGGGTCGAACCCATAATCTTC TGATTAGAAG chrX:197166-197521 + 30 8.56e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTCT CCCATGCTAA chrVII:774137-774652 - 46 8.56e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTCT CCCATGCTAA chrIV:568528-569320 - 48 8.56e-10 CACTCACGAT GGGGGTCGAACCCATAATCTTC TGATTAGAAG chrII:405663-406216 - 29 8.56e-10 CACTCACGAT GGGGGTCGAACCCATAATCTTC TGATTAGAAG chrXVI:559998-560459 + 30 9.71e-10 TGCGAATTCT GTGGATCGAACACAGGACCTCC AGATAACTTG chrXIII:352093-352531 - 77 9.71e-10 CT GTGGATCGAACACAGGACCTCC AGATAACTTG chrVIII:237674-238090 + 26 9.71e-10 TGCGAATTCT GTGGATCGAACACAGGACCTCC AGATAACTTG chrIV:1095167-1095686 + 4 9.71e-10 TCT GTGGATCGAACACAGGACCTCC AGATATCTTG chrII:326474-327206 + 12 9.71e-10 TGATCCAACC GAGGTTCGAACTCGGGATCTTC GCCGTGTAAA chrII:36233-36637 - 72 9.71e-10 GAATTCT GTGGATCGAACACAGGACCTCC AGATGACTTG chrXIII:420355-420857 + 42 1.24e-09 TGATTTCGCC CAGGATCGAACTGGGGACGTTC TGCGTGTTAA chrXIII:372245-372746 + 10 1.24e-09 GATTTCGCC CAGGATCGAACTGGGGACGTTC TGCGTGTTAA chrXI:307980-308425 + 2 1.24e-09 C CAGGATCGAACTGGGGACGTTC TGCGTGTTAA chrVIII:134073-134723 - 13 1.24e-09 AGGTCCTACC CGGATTCGAACCGGGGTTGTCC GGATCAAAAC chrVII:823355-823715 - 39 1.24e-09 TGATTTCGCC CAGGATCGAACTGGGGACGTTC TGCGTGTTAA chrV:438512-438960 - 56 1.24e-09 TGATTTCGCC CAGGATCGAACTGGGGACGTTC TGCGTGTTAA chrIII:168113-168534 + 38 1.24e-09 AGGTCCTACC CGGATTCGAACCGGGGTTGTCC GGATCAAAAC chrXIV:104581-105135 - 38 3.15e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTCC ACATTACTAG chrIX:325548-326018 - 56 3.15e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTCC ACATTACTAG chrII:266172-266686 - 40 3.15e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTCC ACATTACTAG chrXVI:768981-769488 + 33 6.67e-09 CTCCTCATAG GGGGCTCGAACCCCTGACATTT CGGTATCCTT chrIV:884284-884625 - 58 1.62e-08 TGCTCGAGGT GGGGTTTGAACCCACGACGGTC GCGTTGCTTT chrXIII:572612-573248 + 13 3.32e-08 TGCTCCAGGG GAGGTTCGAACTCTCGACCTTC AGATTATGAG chrXIII:837709-838208 - 77 4.66e-08 GG GCGAGTCGAACGCCCGATCTCA AGATTTCGTA chrVI:167275-167696 - 59 4.66e-08 TCTCCCGGGG GCGAGTCGAACGCCCGATCTCA AGATTTCGTA chrVII:700369-701158 - 12 5.07e-08 TGATACCCGC GGGGTTTGAACCCGCGCCTCCG AAGAGATCAG chrXIV:632496-632833 - 27 8.18e-08 CGACCCCAGT GAGGGTTGAACTCACGATCTTG CGATTAACAG chrVII:730956-731395 - 54 8.18e-08 CGACCCCAGT GAGGGTTGAACTCACGATCTTG CGATTAACAG chrVI:137206-137810 + 38 8.18e-08 CGACCCCAGT GAGGGTTGAACTCACGATCTTG CGATTAACAG chrXVI:435690-436196 + 10 1.59e-07 GCTCGCACT CAGGATCGAACTAAGGACCAAC AGATTTGCAA chrXII:426917-427464 - 32 1.83e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGGC ACGCGACAAG chrX:355204-355758 - 65 1.83e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGGC ACGCGACAAG chrX:204521-205002 - 64 1.83e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGGC ACGCGACAAG chrVIII:466971-467169 - 10 2.25e-07 TGCCACCTGC CAGAATTGAACTAGCGACCTTT GCATTACAA chrXVI:744078-744558 - 56 3.13e-07 TGCCACCTGT CAGAATTGAACTAACGACCTTT GCATTACAAG chrXV:710073-710489 - 10 4.29e-07 TAGCGCCGCT CGGTTTCGATCCGAGGACATCA GGGTTATGA chrIII:149714-150226 - 40 4.29e-07 TAGCGCCGCT CGGTTTCGATCCGAGGACATCA GGGTTATGAG chrXII:374196-374667 - 15 8.13e-07 CTTCCCCGCC AGGACTTGAACCTGGAATCTTC TGGTTCGTAG chrIV:619760-620240 + 29 8.13e-07 CTTCCCCGCC AGGACTTGAACCTGGAATCTTC TGGTTCGTAG chrIV:519654-519946 - 45 8.13e-07 TGAAGGATGC GAGGTTCGAACTCGCGCGGACA ACCGTCCAAC chrII:347398-347927 - 43 8.13e-07 TGAAGGATGC GAGGTTCGAACTCGCGCGGACA ACCGTCCAAC chrII:9468-9857 - 23 8.13e-07 TGAAGGATGC GAGGTTCGAACTCGCGCGGACA ACCGTCCAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRRTCGAACCSVGGACCTYM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123375-123788 4.2e-13 55_[+1]_23 chrXVI:819318-819782 4.8e-11 70_[-1]_8 chrXII:1051944-1052220 4.8e-11 48_[+1]_30 chrV:443058-443340 4.8e-11 62_[+1]_16 chrIX:183294-183698 4.8e-11 3_[+1]_75 chrXVI:210024-210462 1.4e-10 8_[+1]_70 chrXIII:290565-291060 1.4e-10 78_[-1] chrXII:214713-215069 1.4e-10 51_[+1]_27 chrXI:140774-141314 1.4e-10 33_[+1]_45 chrVII:541710-542150 1.4e-10 9_[-1]_69 chrVII:401430-401620 1.4e-10 61_[+1]_17 chrV:311740-312293 1.4e-10 66_[+1]_12 chrV:176835-177405 1.4e-10 68_[-1]_10 chrIX:370255-370602 1.4e-10 78_[-1] chrIV:1016983-1017524 1.4e-10 13_[+1]_65 chrII:644964-645428 1.4e-10 60_[-1]_18 chrXIV:96020-96467 3.4e-10 57_[+1]_21 chrVIII:475514-475901 3.9e-10 58_[+1]_20 chrIV:1075306-1075745 3.9e-10 6_[+1]_72 chrXIII:195929-196308 5.1e-10 9_[+1]_69 chrXII:92345-92841 5.1e-10 75_[-1]_3 chrXIII:480386-480925 6.6e-10 25_[+1]_53 chrVII:185535-185937 6.6e-10 37_[+1]_41 chrVII:122062-122518 6.6e-10 69_[-1]_9 chrVI:226508-226947 6.6e-10 20_[+1]_58 chrXVI:860149-860640 7.5e-10 73_[-1]_5 chrXV:226447-226884 7.5e-10 5_[+1]_73 chrX:531563-532226 7.5e-10 22_[-1]_56 chrX:396516-397025 7.5e-10 15_[+1]_63 chrVII:930796-931143 7.5e-10 43_[+1]_35 chrIV:83349-83897 7.5e-10 13_[-1]_65 chrXVI:856814-857105 8.6e-10 33_[-1]_45 chrXIII:747748-748142 8.6e-10 6_[+1]_72 chrXIII:131592-132117 8.6e-10 30_[+1]_48 chrX:374236-374850 8.6e-10 22_[+1]_56 chrX:197166-197521 8.6e-10 29_[+1]_49 chrVII:774137-774652 8.6e-10 45_[-1]_33 chrIV:568528-569320 8.6e-10 47_[-1]_31 chrII:405663-406216 8.6e-10 28_[-1]_50 chrXVI:559998-560459 9.7e-10 29_[+1]_49 chrXIII:352093-352531 9.7e-10 76_[-1]_2 chrVIII:237674-238090 9.7e-10 25_[+1]_53 chrIV:1095167-1095686 9.7e-10 3_[+1]_75 chrII:326474-327206 9.7e-10 11_[+1]_67 chrII:36233-36637 9.7e-10 71_[-1]_7 chrXIII:420355-420857 1.2e-09 41_[+1]_37 chrXIII:372245-372746 1.2e-09 9_[+1]_69 chrXI:307980-308425 1.2e-09 1_[+1]_77 chrVIII:134073-134723 1.2e-09 12_[-1]_66 chrVII:823355-823715 1.2e-09 38_[-1]_40 chrV:438512-438960 1.2e-09 55_[-1]_23 chrIII:168113-168534 1.2e-09 37_[+1]_41 chrXIV:104581-105135 3.1e-09 37_[-1]_41 chrIX:325548-326018 3.1e-09 55_[-1]_23 chrII:266172-266686 3.1e-09 39_[-1]_39 chrXVI:768981-769488 6.7e-09 32_[+1]_46 chrIV:884284-884625 1.6e-08 57_[-1]_21 chrXIII:572612-573248 3.3e-08 12_[+1]_66 chrXIII:837709-838208 4.7e-08 76_[-1]_2 chrVI:167275-167696 4.7e-08 58_[-1]_20 chrVII:700369-701158 5.1e-08 11_[-1]_67 chrXIV:632496-632833 8.2e-08 26_[-1]_52 chrVII:730956-731395 8.2e-08 53_[-1]_25 chrVI:137206-137810 8.2e-08 37_[+1]_41 chrXVI:435690-436196 1.6e-07 9_[+1]_69 chrXII:426917-427464 1.8e-07 31_[-1]_47 chrX:355204-355758 1.8e-07 64_[-1]_14 chrX:204521-205002 1.8e-07 63_[-1]_15 chrVIII:466971-467169 2.3e-07 9_[-1]_69 chrXVI:744078-744558 3.1e-07 55_[-1]_23 chrXV:710073-710489 4.3e-07 9_[-1]_69 chrIII:149714-150226 4.3e-07 39_[-1]_39 chrXII:374196-374667 8.1e-07 14_[-1]_64 chrIV:619760-620240 8.1e-07 28_[+1]_50 chrIV:519654-519946 8.1e-07 44_[-1]_34 chrII:347398-347927 8.1e-07 42_[-1]_36 chrII:9468-9857 8.1e-07 22_[-1]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRRTCGAACCSVGGACCTYM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGGRRTCGAACCSVGGACCTYM width=22 seqs=77 chrIII:123375-123788 ( 56) GGGACTCGAACCCGGGACCTCC 1 chrXVI:819318-819782 ( 71) CGGGATCGAACCGCTGATCCCC 1 chrXII:1051944-1052220 ( 49) CGGGATCGAACCGCTGATCCCC 1 chrV:443058-443340 ( 63) CGGGATCGAACCGCTGATCCCC 1 chrIX:183294-183698 ( 4) CGGGATCGAACCGCTGATCCCC 1 chrXVI:210024-210462 ( 9) GGGAGTCGAACCCCGGTCTCCA 1 chrXIII:290565-291060 ( 79) GGGAGTCGAACCCCGGTCTCCA 1 chrXII:214713-215069 ( 52) CGGAATCGAACCGATGACCTCT 1 chrXI:140774-141314 ( 34) GGGAGTCGAACCCCGGTCTCCA 1 chrVII:541710-542150 ( 10) GGGAGTCGAACCCCGGTCTCCA 1 chrVII:401430-401620 ( 62) GGGAGTCGAACCCCGGTCTCCA 1 chrV:311740-312293 ( 67) CGGAATCGAACCGATGACCTCT 1 chrV:176835-177405 ( 69) GGGAGTCGAACCCCGGTCTCCA 1 chrIX:370255-370602 ( 79) GGGAGTCGAACCCCGGTCTCCA 1 chrIV:1016983-1017524 ( 14) GGGAGTCGAACCCCGGTCTCCA 1 chrII:644964-645428 ( 61) GGGAGTCGAACCCCGGTCTCCA 1 chrXIV:96020-96467 ( 58) GAGAATCGAACCCGTGTCCCCA 1 chrVIII:475514-475901 ( 59) GAGGATCGAACTCGGGACCTTT 1 chrIV:1075306-1075745 ( 7) GAGGATCGAACTCGGGACCTTT 1 chrXIII:195929-196308 ( 10) GGGAATTGAACCCAGGGCCTCT 1 chrXII:92345-92841 ( 76) GGGAATTGAACCCAGGGCCTCT 1 chrXIII:480386-480925 ( 26) GGGGCTCGAACCCCTAACCTTA 1 chrVII:185535-185937 ( 38) GGGGCTCGAACCCCTAACCTTA 1 chrVII:122062-122518 ( 70) GGGGCTCGAACCCCTAACCTTA 1 chrVI:226508-226947 ( 21) GGGGCTCGAACCCCTAACCTTA 1 chrXVI:860149-860640 ( 74) CGGAATCGAACCGGGGGCCCAA 1 chrXV:226447-226884 ( 6) CGGAATCGAACCGGGGGCCCAA 1 chrX:531563-532226 ( 23) CGGAATCGAACCGGGGGCCCAA 1 chrX:396516-397025 ( 16) CGGAATCGAACCGGGGGCCCAA 1 chrVII:930796-931143 ( 44) CGGAATCGAACCGGGGGCCCAA 1 chrIV:83349-83897 ( 14) CGGAATCGAACCGGGGGCCCAA 1 chrXVI:856814-857105 ( 34) CGGAATCGAACCGGAGACCTCT 1 chrXIII:747748-748142 ( 7) GGGGGTCGAACCCATAATCTTC 1 chrXIII:131592-132117 ( 31) GGGGGTCGAACCCATAATCTTC 1 chrX:374236-374850 ( 23) GGGGGTCGAACCCATAATCTTC 1 chrX:197166-197521 ( 30) CGGAATCGAACCGGAGACCTCT 1 chrVII:774137-774652 ( 46) CGGAATCGAACCGGAGACCTCT 1 chrIV:568528-569320 ( 48) GGGGGTCGAACCCATAATCTTC 1 chrII:405663-406216 ( 29) GGGGGTCGAACCCATAATCTTC 1 chrXVI:559998-560459 ( 30) GTGGATCGAACACAGGACCTCC 1 chrXIII:352093-352531 ( 77) GTGGATCGAACACAGGACCTCC 1 chrVIII:237674-238090 ( 26) GTGGATCGAACACAGGACCTCC 1 chrIV:1095167-1095686 ( 4) GTGGATCGAACACAGGACCTCC 1 chrII:326474-327206 ( 12) GAGGTTCGAACTCGGGATCTTC 1 chrII:36233-36637 ( 72) GTGGATCGAACACAGGACCTCC 1 chrXIII:420355-420857 ( 42) CAGGATCGAACTGGGGACGTTC 1 chrXIII:372245-372746 ( 10) CAGGATCGAACTGGGGACGTTC 1 chrXI:307980-308425 ( 2) CAGGATCGAACTGGGGACGTTC 1 chrVIII:134073-134723 ( 13) CGGATTCGAACCGGGGTTGTCC 1 chrVII:823355-823715 ( 39) CAGGATCGAACTGGGGACGTTC 1 chrV:438512-438960 ( 56) CAGGATCGAACTGGGGACGTTC 1 chrIII:168113-168534 ( 38) CGGATTCGAACCGGGGTTGTCC 1 chrXIV:104581-105135 ( 38) CGGATTTGAACCGATGATCTCC 1 chrIX:325548-326018 ( 56) CGGATTTGAACCGATGATCTCC 1 chrII:266172-266686 ( 40) CGGATTTGAACCGATGATCTCC 1 chrXVI:768981-769488 ( 33) GGGGCTCGAACCCCTGACATTT 1 chrIV:884284-884625 ( 58) GGGGTTTGAACCCACGACGGTC 1 chrXIII:572612-573248 ( 13) GAGGTTCGAACTCTCGACCTTC 1 chrXIII:837709-838208 ( 77) GCGAGTCGAACGCCCGATCTCA 1 chrVI:167275-167696 ( 59) GCGAGTCGAACGCCCGATCTCA 1 chrVII:700369-701158 ( 12) GGGGTTTGAACCCGCGCCTCCG 1 chrXIV:632496-632833 ( 27) GAGGGTTGAACTCACGATCTTG 1 chrVII:730956-731395 ( 54) GAGGGTTGAACTCACGATCTTG 1 chrVI:137206-137810 ( 38) GAGGGTTGAACTCACGATCTTG 1 chrXVI:435690-436196 ( 10) CAGGATCGAACTAAGGACCAAC 1 chrXII:426917-427464 ( 32) GGGAATTGAACCCCGATCTGGC 1 chrX:355204-355758 ( 65) GGGAATTGAACCCCGATCTGGC 1 chrX:204521-205002 ( 64) GGGAATTGAACCCCGATCTGGC 1 chrVIII:466971-467169 ( 10) CAGAATTGAACTAGCGACCTTT 1 chrXVI:744078-744558 ( 56) CAGAATTGAACTAACGACCTTT 1 chrXV:710073-710489 ( 10) CGGTTTCGATCCGAGGACATCA 1 chrIII:149714-150226 ( 40) CGGTTTCGATCCGAGGACATCA 1 chrXII:374196-374667 ( 15) AGGACTTGAACCTGGAATCTTC 1 chrIV:619760-620240 ( 29) AGGACTTGAACCTGGAATCTTC 1 chrIV:519654-519946 ( 45) GAGGTTCGAACTCGCGCGGACA 1 chrII:347398-347927 ( 43) GAGGTTCGAACTCGCGCGGACA 1 chrII:9468-9857 ( 23) GAGGTTCGAACTCGCGCGGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRRTCGAACCSVGGACCTYM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 39816 bayes= 7.49039 E= 2.0e-256 -357 103 161 -1291 -32 -288 179 -225 -1291 -1291 239 -1291 68 -1291 133 -357 60 -88 37 -76 -1291 -1291 -1291 170 -1291 203 -1291 -48 -1291 -1291 239 -1291 170 -1291 -1291 -1291 166 -1291 -1291 -357 -1291 239 -1291 -1291 -225 182 -288 -40 -299 161 87 -357 7 64 93 -457 -299 -18 148 -25 -76 -1291 210 -1291 107 -188 -88 -66 -1291 182 -229 -11 -299 176 -42 -87 -257 51 -188 101 -176 144 -229 18 18 121 -188 -99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRRTCGAACCSVGGACCTYM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 77 E= 2.0e-256 0.025974 0.389610 0.584416 0.000000 0.246753 0.025974 0.662338 0.064935 0.000000 0.000000 1.000000 0.000000 0.493506 0.000000 0.480519 0.025974 0.467532 0.103896 0.246753 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 0.779221 0.000000 0.220779 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.974026 0.000000 0.000000 0.025974 0.000000 1.000000 0.000000 0.000000 0.064935 0.675325 0.025974 0.233766 0.038961 0.584416 0.350649 0.025974 0.324675 0.298701 0.363636 0.012987 0.038961 0.168831 0.532468 0.259740 0.181818 0.000000 0.818182 0.000000 0.649351 0.051948 0.103896 0.194805 0.000000 0.675325 0.038961 0.285714 0.038961 0.649351 0.142857 0.168831 0.051948 0.272727 0.051948 0.623377 0.090909 0.519481 0.038961 0.350649 0.350649 0.441558 0.051948 0.155844 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRRTCGAACCSVGGACCTYM MEME-1 regular expression -------------------------------------------------------------------------------- [GC][GA]G[AG][AG]T[CT]GAAC[CT][CG][GAC][GT]GA[CT]C[TC][CT][CA] -------------------------------------------------------------------------------- Time 235.88 secs. ******************************************************************************** ******************************************************************************** MOTIF TWNNAGTCWGRCGCBYTACCMAYTSGG MEME-2 width = 27 sites = 56 llr = 1026 E-value = 3.2e-179 ******************************************************************************** -------------------------------------------------------------------------------- Motif TWNNAGTCWGRCGCBYTACCMAYTSGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :633a1::3251:::::63:581113: pos.-specific C 2133::2811:9:a45:17a3151312 probability G ::22:9:2253:a:31:1::1::1458 matrix T 8432::8:422:::34a1:::14721: bits 2.4 ** 2.1 ** * 1.9 *** * 1.7 ** * *** * * * Relative 1.4 ** * *** * * * Entropy 1.2 * ** * *** * ** * (26.4 bits) 1.0 * ** * *** ** ** * 0.7 * **** *** ** ** ** * 0.5 ** **** ************* ** 0.2 ** **** ****************** 0.0 --------------------------- Multilevel TACAAGTCTGACGCCCTACCAACTGGG consensus TAC ATG TT A C T CAC sequence TG G GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWNNAGTCWGRCGCBYTACCMAYTSGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chrXVI:689333-689847 - 35 5.90e-12 CCCAACAGAT TTCAAGTCTGTCGCCTTAACCACTCGG CCATAGTGCC chrXV:353912-354320 + 11 5.90e-12 ATCTCCACAT TACTAGTGTGGCGCCTTACCAACTTGG CCATAGAAGC chrXIV:104581-105135 - 7 5.90e-12 ATCTCCACAT TACTAGTGTGGCGCCTTACCAACTTGG CCATAG chrV:288189-288752 + 68 5.90e-12 CCCAACAGAT TTCAAGTCTGTCGCCTTAACCACTCGG CCATAG chrIX:325548-326018 - 25 5.90e-12 ATCTCCACAT TACTAGTGTGGCGCCTTACCAACTTGG CCATAGAAGC chrII:266172-266686 - 9 5.90e-12 ATCTCCACAT TACTAGTGTGGCGCCTTACCAACTTGG CCATAGAA chrXVI:622365-622864 + 31 3.05e-11 GAAGTTTTTT CTTCAGTCTGGCGCTCTCCCAACTGAG CTAAATCCGC chrXIV:374664-375083 - 56 3.05e-11 CGAAGTTTTT CTTCAGTCTGGCGCTCTCCCAACTGAG CTAAGTCCGC chrXIII:352093-352531 - 28 3.05e-11 CGAAGTATTT CTTCAGTCTGGCGCTCTCCCAACTGAG CTAAATCCGC chrVIII:358316-358822 + 14 3.05e-11 GAAGTTTTTT CTTCAGTCTGGCGCTCTCCCAACTGAG CTAAATCCGC chrVIII:237674-238090 + 71 3.05e-11 GAAGTTTTTT CTTCAGTCTGGCGCTCTCCCAACTGAG CTA chrVII:440554-441013 + 38 3.05e-11 GAAGTTTTTT CTTCAGTCTGGCGCTCTCCCAACTGAG CTAAATCCGC chrIV:1095167-1095686 + 49 3.05e-11 AAAGTTTTTT CTTCAGTCTGGCGCTCTCCCAACTGAG CTAAGTCCGC chrII:36233-36637 - 23 3.05e-11 CGAAGTTTTT CTTCAGTCTGGCGCTCTCCCAACTGAG CTAAATCCGC chrIII:227723-228215 - 33 3.55e-11 TTTTATTCCA TTCGAGTCTCTCGCCTTAACCACTCGG CCATAGTGCC chrXVI:581853-582284 - 54 5.53e-11 ACCTTATGAT TAAGAGTCATACGCGCTACCGATTGCG CCAACAAGGC chrXIII:480386-480925 + 52 5.53e-11 ACCTTATGAT TAAGAGTCATACGCGCTACCGATTGCG CCAACAAGGC chrXI:578687-579296 - 34 5.53e-11 CAAATGCGCT TAAAAGCCGAACGCTCTACCAACTGAG CTAACAAGGA chrVII:185535-185937 + 64 5.53e-11 ACCTTATGAT TAAGAGTCATACGCGCTACCGATTGCG CCAACAAGGC chrVII:122062-122518 - 39 5.53e-11 ACCTTATGAT TAAGAGTCATACGCGCTACCGATTGCG CCAACAAGGC chrVII:115266-115730 - 50 5.53e-11 CAAATGCGCT TAAAAGCCGAACGCTCTACCAACTGAG CTAACAAGGA chrVI:226508-226947 + 47 5.53e-11 ACCTTATGAT TAAGAGTCATACGCGCTACCGATTGCG CCAACAAGGC chrIV:359324-359814 - 68 5.53e-11 TGCGCT TAAAAGCCGAACGCTCTACCAACTGAG CTAACAAGGA chrIII:151129-151586 + 13 5.53e-11 ACCTTATGAT TAAGAGTCATACGCGCTACCGATTGCG CCAACAAGGC chrXIII:259034-259460 + 6 1.00e-09 AAGAT TTCTAATCTTTCGCCTTAACCACTCGG CCAAGTTGCC chrXII:167736-168281 + 31 1.00e-09 CCCAAAAGAT TTCTAATCTTTCGCCTTAACCACTCGG CCAAGTTGCC chrX:523790-524410 + 7 1.00e-09 AAAGAT TTCTAATCTTTCGCCTTAACCACTCGG CCAAGTTGCC chrV:86420-86781 - 64 1.00e-09 CCCAAAAGAT TTCTAATCTTTCGCCTTAACCACTCGG CCAAGTTGCC chrIV:437550-438010 - 52 1.00e-09 CCCAAAAGAT TTCTAATCTTTCGCCTTAACCACTCGG CCAAGTTGCC chrXIII:747748-748142 + 33 2.32e-09 ATCTTCTGAT TAGAAGTCAGACGCGTTGCCATTACGC CACGCGAGCT chrXIII:131592-132117 + 57 2.32e-09 ATCTTCTGAT TAGAAGTCAGACGCGTTGCCATTACGC CACGCGAGCT chrXI:162429-162679 + 19 2.32e-09 ATCTTCTGAT TAGAAGTCAGACGCGTTGCCATTACGC CACGCGAGCT chrX:374236-374850 + 49 2.32e-09 ATCTTCTGAT TAGAAGTCAGACGCGTTGCCATTACGC CACGCGAGCT chrIV:568528-569320 - 17 2.32e-09 ATCTTCTGAT TAGAAGTCAGACGCGTTGCCATTACGC CACGCGAGCT chrXI:490731-491213 - 56 4.16e-09 ATCTTCTGGT TCGTAGCCAGACGCCGTGACCATTGGG CCACGAGGAA chrX:233690-234184 - 62 4.16e-09 ATCTCCTGGT TCGTAGCCAGACGCCGTGACCATTGGG CCACGAGGAA chrIV:619760-620240 + 55 4.16e-09 ATCTTCTGGT TCGTAGCCAGACGCCGTGACCATTGGG CCACGAGGAA chrXV:274466-274986 - 7 6.01e-09 TCTGAGGAAA TAGCAGGGCATCGCCTTAACCACTCGG CCACTG chrXIII:572612-573248 + 39 8.57e-09 ACCTTCAGAT TATGAGACTGACGCTCTTCCTACTGAG CTACTGAAGC chrIV:1175592-1176073 - 57 8.57e-09 ACCTTCAGAT TATGAGACTGACGCTCTTCCTACTGAG CTACTGAAGC chrXV:228056-228630 - 49 1.54e-08 ATCTTGCGAT TAACAGTCGCACGCCTTAACCAACTTG GCCATGGAGT chrXI:74427-74826 - 59 1.54e-08 ATCTTGCGAT TAACAGTCGCACGCCTTAACCAACTTG GCCATGGAGT chrVII:730956-731395 - 23 1.54e-08 ATCTTGCGAT TAACAGTCGCACGCCTTAACCAACTTG GCCATGGAGT chrVI:137206-137810 + 64 1.54e-08 ATCTTGCGAT TAACAGTCGCACGCCTTAACCAACTTG GCCATGGAGT chrIII:127518-127902 - 67 1.54e-08 TTGCGAT TAACAGTCGCACGCCTTAACCAACTTG GCCATGGAGT chrXVI:744078-744558 - 25 1.81e-08 ACCTTTGCAT TACAAGTGCAACGCTCTACCACTAAGC TAAGGAGGCT chrVII:1003998-1004407 - 73 1.81e-08 T TACAAGTGCAACGCTCTACCACTAAGC TAAGGAGGCA chrVII:661491-661989 - 68 1.81e-08 TTGCAT TACAAGTGCAACGCTCTACCACTAAGC TAAGGAGGCA chrX:517680-518108 + 5 2.11e-08 GGGT TATGAGCCCTGCGCGCTTCCACTGCGC CACGGCGCTT chrIII:149714-150226 - 9 2.11e-08 ACATCAGGGT TATGAGCCCTGCGCGCTTCCACTGCGC CACGGCGC chrX:415706-416294 + 51 8.18e-08 CAAGATTTAA TTGGAGTCGAAAGCTCTACCATTGAGC CACCGCTTCA chrVII:287165-287733 + 21 8.18e-08 CAAGATTTAA TTGGAGTCGAAAGCTCTACCATTGAGC CACCGCTTCA chrXII:605159-605639 + 47 8.73e-08 CGAATGTTGC TATAAGCACGAAGCTCTAACCACTGAG CTACACGAGC chrXVI:435690-436196 + 36 2.29e-07 ACCAACAGAT TTGCAATCTGCTGCGCTACCACTGCGC CATACGAGCT chrXVI:856814-857105 - 3 4.57e-07 ACCTCTCCCA TGCTAAGGGAGCGCGCTACCGACTACG CC chrII:347398-347927 - 2 2.98e-06 TCCAACAGAT CTTAAGTCTGCCGCCTTAGACCACTCG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWNNAGTCWGRCGCBYTACCMAYTSGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:689333-689847 5.9e-12 34_[-2]_39 chrXV:353912-354320 5.9e-12 10_[+2]_63 chrXIV:104581-105135 5.9e-12 6_[-2]_67 chrV:288189-288752 5.9e-12 67_[+2]_6 chrIX:325548-326018 5.9e-12 24_[-2]_49 chrII:266172-266686 5.9e-12 8_[-2]_65 chrXVI:622365-622864 3e-11 30_[+2]_43 chrXIV:374664-375083 3e-11 55_[-2]_18 chrXIII:352093-352531 3e-11 27_[-2]_46 chrVIII:358316-358822 3e-11 13_[+2]_60 chrVIII:237674-238090 3e-11 70_[+2]_3 chrVII:440554-441013 3e-11 37_[+2]_36 chrIV:1095167-1095686 3e-11 48_[+2]_25 chrII:36233-36637 3e-11 22_[-2]_51 chrIII:227723-228215 3.5e-11 32_[-2]_41 chrXVI:581853-582284 5.5e-11 53_[-2]_20 chrXIII:480386-480925 5.5e-11 51_[+2]_22 chrXI:578687-579296 5.5e-11 33_[-2]_40 chrVII:185535-185937 5.5e-11 63_[+2]_10 chrVII:122062-122518 5.5e-11 38_[-2]_35 chrVII:115266-115730 5.5e-11 49_[-2]_24 chrVI:226508-226947 5.5e-11 46_[+2]_27 chrIV:359324-359814 5.5e-11 67_[-2]_6 chrIII:151129-151586 5.5e-11 12_[+2]_61 chrXIII:259034-259460 1e-09 5_[+2]_68 chrXII:167736-168281 1e-09 30_[+2]_43 chrX:523790-524410 1e-09 6_[+2]_67 chrV:86420-86781 1e-09 63_[-2]_10 chrIV:437550-438010 1e-09 51_[-2]_22 chrXIII:747748-748142 2.3e-09 32_[+2]_41 chrXIII:131592-132117 2.3e-09 56_[+2]_17 chrXI:162429-162679 2.3e-09 18_[+2]_55 chrX:374236-374850 2.3e-09 48_[+2]_25 chrIV:568528-569320 2.3e-09 16_[-2]_57 chrXI:490731-491213 4.2e-09 55_[-2]_18 chrX:233690-234184 4.2e-09 61_[-2]_12 chrIV:619760-620240 4.2e-09 54_[+2]_19 chrXV:274466-274986 6e-09 6_[-2]_67 chrXIII:572612-573248 8.6e-09 38_[+2]_35 chrIV:1175592-1176073 8.6e-09 56_[-2]_17 chrXV:228056-228630 1.5e-08 48_[-2]_25 chrXI:74427-74826 1.5e-08 58_[-2]_15 chrVII:730956-731395 1.5e-08 22_[-2]_51 chrVI:137206-137810 1.5e-08 63_[+2]_10 chrIII:127518-127902 1.5e-08 66_[-2]_7 chrXVI:744078-744558 1.8e-08 24_[-2]_49 chrVII:1003998-1004407 1.8e-08 72_[-2]_1 chrVII:661491-661989 1.8e-08 67_[-2]_6 chrX:517680-518108 2.1e-08 4_[+2]_69 chrIII:149714-150226 2.1e-08 8_[-2]_65 chrX:415706-416294 8.2e-08 50_[+2]_23 chrVII:287165-287733 8.2e-08 20_[+2]_53 chrXII:605159-605639 8.7e-08 46_[+2]_27 chrXVI:435690-436196 2.3e-07 35_[+2]_38 chrXVI:856814-857105 4.6e-07 2_[-2]_71 chrII:347398-347927 3e-06 1_[-2]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWNNAGTCWGRCGCBYTACCMAYTSGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TWNNAGTCWGRCGCBYTACCMAYTSGG width=27 seqs=56 chrXVI:689333-689847 ( 35) TTCAAGTCTGTCGCCTTAACCACTCGG 1 chrXV:353912-354320 ( 11) TACTAGTGTGGCGCCTTACCAACTTGG 1 chrXIV:104581-105135 ( 7) TACTAGTGTGGCGCCTTACCAACTTGG 1 chrV:288189-288752 ( 68) TTCAAGTCTGTCGCCTTAACCACTCGG 1 chrIX:325548-326018 ( 25) TACTAGTGTGGCGCCTTACCAACTTGG 1 chrII:266172-266686 ( 9) TACTAGTGTGGCGCCTTACCAACTTGG 1 chrXVI:622365-622864 ( 31) CTTCAGTCTGGCGCTCTCCCAACTGAG 1 chrXIV:374664-375083 ( 56) CTTCAGTCTGGCGCTCTCCCAACTGAG 1 chrXIII:352093-352531 ( 28) CTTCAGTCTGGCGCTCTCCCAACTGAG 1 chrVIII:358316-358822 ( 14) CTTCAGTCTGGCGCTCTCCCAACTGAG 1 chrVIII:237674-238090 ( 71) CTTCAGTCTGGCGCTCTCCCAACTGAG 1 chrVII:440554-441013 ( 38) CTTCAGTCTGGCGCTCTCCCAACTGAG 1 chrIV:1095167-1095686 ( 49) CTTCAGTCTGGCGCTCTCCCAACTGAG 1 chrII:36233-36637 ( 23) CTTCAGTCTGGCGCTCTCCCAACTGAG 1 chrIII:227723-228215 ( 33) TTCGAGTCTCTCGCCTTAACCACTCGG 1 chrXVI:581853-582284 ( 54) TAAGAGTCATACGCGCTACCGATTGCG 1 chrXIII:480386-480925 ( 52) TAAGAGTCATACGCGCTACCGATTGCG 1 chrXI:578687-579296 ( 34) TAAAAGCCGAACGCTCTACCAACTGAG 1 chrVII:185535-185937 ( 64) TAAGAGTCATACGCGCTACCGATTGCG 1 chrVII:122062-122518 ( 39) TAAGAGTCATACGCGCTACCGATTGCG 1 chrVII:115266-115730 ( 50) TAAAAGCCGAACGCTCTACCAACTGAG 1 chrVI:226508-226947 ( 47) TAAGAGTCATACGCGCTACCGATTGCG 1 chrIV:359324-359814 ( 68) TAAAAGCCGAACGCTCTACCAACTGAG 1 chrIII:151129-151586 ( 13) TAAGAGTCATACGCGCTACCGATTGCG 1 chrXIII:259034-259460 ( 6) TTCTAATCTTTCGCCTTAACCACTCGG 1 chrXII:167736-168281 ( 31) TTCTAATCTTTCGCCTTAACCACTCGG 1 chrX:523790-524410 ( 7) TTCTAATCTTTCGCCTTAACCACTCGG 1 chrV:86420-86781 ( 64) TTCTAATCTTTCGCCTTAACCACTCGG 1 chrIV:437550-438010 ( 52) TTCTAATCTTTCGCCTTAACCACTCGG 1 chrXIII:747748-748142 ( 33) TAGAAGTCAGACGCGTTGCCATTACGC 1 chrXIII:131592-132117 ( 57) TAGAAGTCAGACGCGTTGCCATTACGC 1 chrXI:162429-162679 ( 19) TAGAAGTCAGACGCGTTGCCATTACGC 1 chrX:374236-374850 ( 49) TAGAAGTCAGACGCGTTGCCATTACGC 1 chrIV:568528-569320 ( 17) TAGAAGTCAGACGCGTTGCCATTACGC 1 chrXI:490731-491213 ( 56) TCGTAGCCAGACGCCGTGACCATTGGG 1 chrX:233690-234184 ( 62) TCGTAGCCAGACGCCGTGACCATTGGG 1 chrIV:619760-620240 ( 55) TCGTAGCCAGACGCCGTGACCATTGGG 1 chrXV:274466-274986 ( 7) TAGCAGGGCATCGCCTTAACCACTCGG 1 chrXIII:572612-573248 ( 39) TATGAGACTGACGCTCTTCCTACTGAG 1 chrIV:1175592-1176073 ( 57) TATGAGACTGACGCTCTTCCTACTGAG 1 chrXV:228056-228630 ( 49) TAACAGTCGCACGCCTTAACCAACTTG 1 chrXI:74427-74826 ( 59) TAACAGTCGCACGCCTTAACCAACTTG 1 chrVII:730956-731395 ( 23) TAACAGTCGCACGCCTTAACCAACTTG 1 chrVI:137206-137810 ( 64) TAACAGTCGCACGCCTTAACCAACTTG 1 chrIII:127518-127902 ( 67) TAACAGTCGCACGCCTTAACCAACTTG 1 chrXVI:744078-744558 ( 25) TACAAGTGCAACGCTCTACCACTAAGC 1 chrVII:1003998-1004407 ( 73) TACAAGTGCAACGCTCTACCACTAAGC 1 chrVII:661491-661989 ( 68) TACAAGTGCAACGCTCTACCACTAAGC 1 chrX:517680-518108 ( 5) TATGAGCCCTGCGCGCTTCCACTGCGC 1 chrIII:149714-150226 ( 9) TATGAGCCCTGCGCGCTTCCACTGCGC 1 chrX:415706-416294 ( 51) TTGGAGTCGAAAGCTCTACCATTGAGC 1 chrVII:287165-287733 ( 21) TTGGAGTCGAAAGCTCTACCATTGAGC 1 chrXII:605159-605639 ( 47) TATAAGCACGAAGCTCTAACCACTGAG 1 chrXVI:435690-436196 ( 36) TTGCAATCTGCTGCGCTACCACTGCGC 1 chrXVI:856814-857105 ( 3) TGCTAAGGGAGCGCGCTACCGACTACG 1 chrII:347398-347927 ( 2) CTTAAGTCTGCCGCCTTAGACCACTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWNNAGTCWGRCGCBYTACCMAYTSGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 37296 bayes= 6.47573 E= 3.2e-179 -1245 -25 -1245 144 89 -183 -342 21 -30 58 16 -30 -21 49 28 -41 170 -1245 -1245 -1245 -130 -1245 219 -1245 -311 -25 -242 131 -411 210 -25 -1245 -30 -61 4 47 -79 -84 133 -41 79 -242 49 -94 -253 228 -1245 -411 -1245 -1245 239 -1245 -1245 239 -1245 -1245 -1245 104 49 14 -1245 144 -183 47 -1245 -1245 -1245 170 106 -42 -42 -211 6 179 -342 -1245 -411 236 -1245 -1245 70 83 -61 -311 128 -61 -1245 -130 -153 139 -1245 35 -111 -84 -110 110 -153 67 110 -79 -30 -42 144 -179 -1245 28 201 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWNNAGTCWGRCGCBYTACCMAYTSGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 56 E= 3.2e-179 0.000000 0.160714 0.000000 0.839286 0.571429 0.053571 0.017857 0.357143 0.250000 0.285714 0.214286 0.250000 0.267857 0.267857 0.232143 0.232143 1.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.035714 0.160714 0.035714 0.767857 0.017857 0.821429 0.160714 0.000000 0.250000 0.125000 0.196429 0.428571 0.178571 0.107143 0.482143 0.232143 0.535714 0.035714 0.267857 0.160714 0.053571 0.928571 0.000000 0.017857 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.392857 0.267857 0.339286 0.000000 0.517857 0.053571 0.428571 0.000000 0.000000 0.000000 1.000000 0.642857 0.142857 0.142857 0.071429 0.321429 0.660714 0.017857 0.000000 0.017857 0.982143 0.000000 0.000000 0.500000 0.339286 0.125000 0.035714 0.750000 0.125000 0.000000 0.125000 0.107143 0.500000 0.000000 0.392857 0.142857 0.107143 0.089286 0.660714 0.107143 0.303571 0.410714 0.178571 0.250000 0.142857 0.517857 0.089286 0.000000 0.232143 0.767857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWNNAGTCWGRCGCBYTACCMAYTSGG MEME-2 regular expression -------------------------------------------------------------------------------- T[AT][CATG][ACGT]AGTC[TA][GT][AG]CGC[CTG][CT]TA[CA]C[AC]A[CT]T[GC][GA][GC] -------------------------------------------------------------------------------- Time 456.70 secs. ******************************************************************************** ******************************************************************************** MOTIF GGKCKHKTGGYCTAGTGGKTWAAGSCAYCG MEME-3 width = 30 sites = 33 llr = 712 E-value = 2.3e-117 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGKCKHKTGGYCTAGTGGKTWAAGSCAYCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::1:222:1::::a:::::24761::52:1 pos.-specific C :2:613::::462::12::21:2:471392 probability G a841415:9a:22:a:6a4::216512115 matrix T ::53343a::626::91:6651221225:2 bits 2.4 * * * 2.1 * * * * 1.9 * * * * * 1.7 ** *** ** * * Relative 1.4 ** *** *** * * Entropy 1.2 ** *** *** * * * (31.1 bits) 1.0 ** ***** ****** * * * 0.7 ** * ************ * *** * 0.5 **** ************* ** *** * 0.2 ****************************** 0.0 ------------------------------ Multilevel GGTCGTGTGGTCTAGTGGTTTAAGGCATCG consensus GTTCT CGG C GAA CTC GC C sequence A T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCKHKTGGYCTAGTGGKTWAAGSCAYCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:819318-819782 + 29 1.85e-13 ACAATAGAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrXIV:602063-602546 + 58 1.85e-13 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrIX:183294-183698 - 38 1.85e-13 ACAAATTCCT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrII:197162-197847 + 40 1.85e-13 CAGTAATCAA GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrXIII:372245-372746 - 44 7.36e-13 AATAAAACCT GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrXI:379452-379917 + 46 7.36e-13 CAGATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrXI:307980-308425 - 36 7.36e-13 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrX:378137-378597 + 43 7.36e-13 TAAATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrV:438512-438960 + 14 7.36e-13 CAACAAATTA GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrX:617695-618151 + 46 6.21e-12 AACAAACAAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTCA GATTTAGGTG chrXIII:504645-505222 + 12 1.00e-11 ACAGATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT GATTCAAGAA chrVII:422877-423352 + 28 1.00e-11 ACAGATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT GATTCAAGAA chrXII:656840-657212 - 1 1.42e-11 CAAGAAAATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC chrX:197166-197521 - 63 1.42e-11 TAATATTA GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC CTTAGCATGG chrVII:774137-774652 + 5 1.42e-11 AATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC CTTAGCATGG chrXII:92345-92841 + 5 5.15e-11 ATAA GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrVIII:388702-389209 - 61 5.15e-11 ACAGATACAT GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrI:138942-139361 + 51 5.15e-11 CAATTAGTAC GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrXVI:860149-860640 + 35 6.30e-11 TAAATAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrXVI:571997-572515 + 63 6.30e-11 ACAATACTTC GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATC chrXV:226447-226884 - 37 6.30e-11 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrX:396516-397025 - 47 6.30e-11 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrVI:162013-162401 + 71 6.30e-11 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAACG chrII:326474-327206 - 46 1.49e-10 TCGAGTTCCG GGTCCAATGGTCCAGTGGTTCAAGACGTCG CCTTTACACG chrXII:962816-963277 - 30 1.63e-10 TATTATCGAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA GACTTAAGAT chrXI:84017-84430 + 35 1.63e-10 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA GACTTAAGAT chrX:424287-424721 - 32 1.63e-10 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA GACTTAAGAT chrXIII:808114-808511 - 26 4.62e-09 AGAAGAAAAA GGTCCTATAGTGTAGTGGTTATCACTTTCG GTTCTGATCC chrIII:168113-168534 - 70 4.62e-09 T GGTCCTATAGTGTAGTGGTTATCACTTTCG GTTTTGATCC chrV:130978-131369 - 1 6.57e-09 ATAATTAAGA GGTTTTATAGTGTAGTGGTTATCACTTTCG chrII:350574-351042 + 69 6.57e-09 TCAATAAAAG GGTTTTATAGTGTAGTGGTTATCACTTTCG GT chrIV:1150707-1151155 - 31 9.20e-09 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTTAAGGCGATGC CTGCTATTTC chrIII:316228-316597 + 52 3.62e-08 GGTGGTTGGG AGTGGTATGGTTGAGTGGGGCAGGGTAACG AGTGGGGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCKHKTGGYCTAGTGGKTWAAGSCAYCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:819318-819782 1.9e-13 28_[+3]_42 chrXIV:602063-602546 1.9e-13 57_[+3]_13 chrIX:183294-183698 1.9e-13 37_[-3]_33 chrII:197162-197847 1.9e-13 39_[+3]_31 chrXIII:372245-372746 7.4e-13 43_[-3]_27 chrXI:379452-379917 7.4e-13 45_[+3]_25 chrXI:307980-308425 7.4e-13 35_[-3]_35 chrX:378137-378597 7.4e-13 42_[+3]_28 chrV:438512-438960 7.4e-13 13_[+3]_57 chrX:617695-618151 6.2e-12 45_[+3]_25 chrXIII:504645-505222 1e-11 11_[+3]_59 chrVII:422877-423352 1e-11 27_[+3]_43 chrXII:656840-657212 1.4e-11 [-3]_70 chrX:197166-197521 1.4e-11 62_[-3]_8 chrVII:774137-774652 1.4e-11 4_[+3]_66 chrXII:92345-92841 5.2e-11 4_[+3]_66 chrVIII:388702-389209 5.2e-11 60_[-3]_10 chrI:138942-139361 5.2e-11 50_[+3]_20 chrXVI:860149-860640 6.3e-11 34_[+3]_36 chrXVI:571997-572515 6.3e-11 62_[+3]_8 chrXV:226447-226884 6.3e-11 36_[-3]_34 chrX:396516-397025 6.3e-11 46_[-3]_24 chrVI:162013-162401 6.3e-11 70_[+3] chrII:326474-327206 1.5e-10 45_[-3]_25 chrXII:962816-963277 1.6e-10 29_[-3]_41 chrXI:84017-84430 1.6e-10 34_[+3]_36 chrX:424287-424721 1.6e-10 31_[-3]_39 chrXIII:808114-808511 4.6e-09 25_[-3]_45 chrIII:168113-168534 4.6e-09 69_[-3]_1 chrV:130978-131369 6.6e-09 [-3]_70 chrII:350574-351042 6.6e-09 68_[+3]_2 chrIV:1150707-1151155 9.2e-09 30_[-3]_40 chrIII:316228-316597 3.6e-08 51_[+3]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCKHKTGGYCTAGTGGKTWAAGSCAYCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGKCKHKTGGYCTAGTGGKTWAAGSCAYCG width=30 seqs=33 chrXVI:819318-819782 ( 29) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrXIV:602063-602546 ( 58) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrIX:183294-183698 ( 38) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrII:197162-197847 ( 40) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrXIII:372245-372746 ( 44) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrXI:379452-379917 ( 46) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrXI:307980-308425 ( 36) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrX:378137-378597 ( 43) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrV:438512-438960 ( 14) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrX:617695-618151 ( 46) GGGAGTTTGGCCGAGTGGTTTAAGGCGTCA 1 chrXIII:504645-505222 ( 12) GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT 1 chrVII:422877-423352 ( 28) GGTTGTTTGGCCGAGCGGTCTAAGGCGCCT 1 chrXII:656840-657212 ( 1) GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC 1 chrX:197166-197521 ( 63) GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC 1 chrVII:774137-774652 ( 5) GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC 1 chrXII:92345-92841 ( 5) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrVIII:388702-389209 ( 61) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrI:138942-139361 ( 51) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrXVI:860149-860640 ( 35) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrXVI:571997-572515 ( 63) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrXV:226447-226884 ( 37) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrX:396516-397025 ( 47) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrVI:162013-162401 ( 71) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrII:326474-327206 ( 46) GGTCCAATGGTCCAGTGGTTCAAGACGTCG 1 chrXII:962816-963277 ( 30) GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA 1 chrXI:84017-84430 ( 35) GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA 1 chrX:424287-424721 ( 32) GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA 1 chrXIII:808114-808511 ( 26) GGTCCTATAGTGTAGTGGTTATCACTTTCG 1 chrIII:168113-168534 ( 70) GGTCCTATAGTGTAGTGGTTATCACTTTCG 1 chrV:130978-131369 ( 1) GGTTTTATAGTGTAGTGGTTATCACTTTCG 1 chrII:350574-351042 ( 69) GGTTTTATAGTGTAGTGGTTATCACTTTCG 1 chrIV:1150707-1151155 ( 31) GTCCCAGTGGCCGAGTGGTTAAGGCGATGC 1 chrIII:316228-316597 ( 52) AGTGGTATGGTTGAGTGGGGCAGGGTAACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCKHKTGGYCTAGTGGKTWAAGSCAYCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 35784 bayes= 8.35444 E= 2.3e-117 -335 -1169 234 -1169 -1169 -34 210 -335 -176 -266 93 74 -335 159 -66 -18 -103 -66 104 11 -54 51 -107 46 -76 -1169 143 -3 -1169 -1169 -1169 169 -135 -1169 220 -1169 -1169 -1169 239 -1169 -1169 115 -1169 90 -1169 166 15 -76 -1169 -34 34 97 169 -1169 -1169 -1169 -1169 -1169 239 -1169 -1169 -166 -1169 160 -1169 34 173 -135 -1169 -1169 239 -1169 -1169 -1169 104 97 -35 -34 -266 90 35 -166 -1169 82 117 -1169 -7 -135 90 15 -166 -103 -135 -1169 173 -35 -335 104 134 -176 -1169 193 -66 -103 65 -107 15 -54 -76 51 -107 56 -1169 220 -66 -1169 -135 15 125 -54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCKHKTGGYCTAGTGGKTWAAGSCAYCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 33 E= 2.3e-117 0.030303 0.000000 0.969697 0.000000 0.000000 0.151515 0.818182 0.030303 0.090909 0.030303 0.363636 0.515152 0.030303 0.575758 0.121212 0.272727 0.151515 0.121212 0.393939 0.333333 0.212121 0.272727 0.090909 0.424242 0.181818 0.000000 0.515152 0.303030 0.000000 0.000000 0.000000 1.000000 0.121212 0.000000 0.878788 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.424242 0.000000 0.575758 0.000000 0.606061 0.212121 0.181818 0.000000 0.151515 0.242424 0.606061 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.060606 0.000000 0.939394 0.000000 0.242424 0.636364 0.121212 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.393939 0.606061 0.242424 0.151515 0.030303 0.575758 0.393939 0.060606 0.000000 0.545455 0.696970 0.000000 0.181818 0.121212 0.575758 0.212121 0.060606 0.151515 0.121212 0.000000 0.636364 0.242424 0.030303 0.393939 0.484848 0.090909 0.000000 0.727273 0.121212 0.151515 0.484848 0.090909 0.212121 0.212121 0.181818 0.272727 0.090909 0.454545 0.000000 0.878788 0.121212 0.000000 0.121212 0.212121 0.454545 0.212121 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCKHKTGGYCTAGTGGKTWAAGSCAYCG MEME-3 regular expression -------------------------------------------------------------------------------- GG[TG][CT][GT][TCA][GT]TGG[TC][CG][TG]AGT[GC]G[TG][TA][TA]A[AC][GT][GC]C[AGT][TC]C[GCT] -------------------------------------------------------------------------------- Time 669.26 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71713-73269 8.43e-01 100 chrI:81857-82344 1.25e-01 100 chrI:138942-139361 2.41e-07 50_[+3(5.15e-11)]_20 chrI:166171-166593 9.37e-01 100 chrI:202516-203192 9.12e-01 100 chrII:9468-9857 6.21e-04 22_[-1(8.13e-07)]_56 chrII:36233-36637 2.28e-16 22_[-2(3.05e-11)]_22_[-1(9.71e-10)]_\ 7 chrII:44258-45391 1.77e-02 44_[+3(2.58e-05)]_26 chrII:45573-46807 4.22e-02 58_[-2(6.11e-05)]_15 chrII:60686-61823 5.26e-01 100 chrII:87948-88574 8.35e-01 100 chrII:89571-90386 2.30e-01 100 chrII:165093-165429 2.86e-01 100 chrII:167907-169517 6.31e-01 100 chrII:181256-181756 9.81e-01 100 chrII:197162-197847 2.20e-12 39_[+3(1.85e-13)]_31 chrII:226970-227337 2.70e-03 21_[-1(5.14e-06)]_57 chrII:266172-266686 2.55e-13 8_[-2(5.90e-12)]_4_[-1(3.15e-09)]_\ 39 chrII:326474-327206 8.04e-14 11_[+1(9.71e-10)]_12_[-3(1.49e-10)]_\ 25 chrII:332171-333008 9.15e-01 100 chrII:347398-347927 1.47e-06 1_[-2(2.98e-06)]_14_[-1(8.13e-07)]_\ 36 chrII:350574-351042 3.64e-06 68_[+3(6.57e-09)]_2 chrII:405663-406216 1.54e-07 28_[-1(8.56e-10)]_20_[+3(9.72e-05)] chrII:415475-415895 4.72e-01 100 chrII:477020-477750 2.93e-01 100 chrII:592821-593301 7.58e-01 100 chrII:594962-595418 8.04e-01 100 chrII:604068-607106 1.87e-01 100 chrII:642885-643081 3.40e-01 100 chrII:644964-645428 3.89e-07 60_[-1(1.45e-10)]_18 chrIII:79-1264 5.99e-01 100 chrIII:8748-9166 7.84e-01 100 chrIII:11080-11554 9.97e-01 100 chrIII:32017-33329 4.77e-01 100 chrIII:90781-91103 3.20e-02 48_[-1(5.41e-05)]_30 chrIII:123375-123788 9.52e-09 55_[+1(4.20e-13)]_23 chrIII:127518-127902 1.23e-07 66_[-2(1.54e-08)]_7 chrIII:137808-138974 9.95e-01 100 chrIII:142137-143144 8.63e-01 100 chrIII:149714-150226 1.26e-08 8_[-2(2.11e-08)]_4_[-1(4.29e-07)]_\ 39 chrIII:151129-151586 4.67e-09 12_[+2(5.53e-11)]_61 chrIII:163429-163912 2.30e-01 100 chrIII:168113-168534 1.05e-11 37_[+1(1.24e-09)]_10_[-3(4.62e-09)]_\ 1 chrIII:177254-178709 9.90e-01 100 chrIII:227723-228215 8.74e-11 32_[-2(3.55e-11)]_41 chrIII:293694-294709 3.85e-01 100 chrIII:295337-295935 6.02e-01 100 chrIII:308621-308984 1.22e-02 100 chrIII:316228-316597 1.41e-04 51_[+3(3.62e-08)]_19 chrIV:83349-83897 4.70e-06 13_[-1(7.54e-10)]_65 chrIV:117147-118179 8.31e-01 100 chrIV:118444-118845 9.69e-01 100 chrIV:129764-131020 8.23e-01 100 chrIV:216580-217715 8.50e-01 100 chrIV:221629-222358 6.35e-01 100 chrIV:229442-230499 6.49e-01 100 chrIV:307983-309345 4.20e-01 100 chrIV:321677-321970 1.68e-01 100 chrIV:340991-341957 5.46e-01 100 chrIV:358044-358490 3.70e-01 100 chrIV:359324-359814 5.11e-10 67_[-2(5.53e-11)]_6 chrIV:410216-410833 2.87e-01 100 chrIV:411212-411674 1.80e-01 100 chrIV:412081-413045 4.57e-01 100 chrIV:434051-435121 2.44e-01 100 chrIV:437550-438010 2.01e-09 51_[-2(1.00e-09)]_22 chrIV:488473-488989 9.21e-01 100 chrIV:489659-491303 4.76e-02 100 chrIV:519654-519946 1.47e-06 3_[-2(2.98e-06)]_14_[-1(8.13e-07)]_\ 34 chrIV:520642-521180 7.09e-01 100 chrIV:538840-539355 2.44e-01 100 chrIV:568528-569320 1.95e-12 16_[-2(2.32e-09)]_4_[-1(8.56e-10)]_\ 31 chrIV:578943-580657 6.59e-02 65_[+2(4.64e-05)]_8 chrIV:601197-602358 2.96e-01 100 chrIV:619760-620240 2.98e-09 28_[+1(8.13e-07)]_4_[+2(4.16e-09)]_\ 19 chrIV:667722-668596 5.11e-01 100 chrIV:757469-758384 7.68e-01 100 chrIV:802586-802839 3.79e-06 78_[+1(1.24e-09)] chrIV:835854-836313 5.33e-01 100 chrIV:884284-884625 4.10e-06 57_[-1(1.62e-08)]_21 chrIV:945641-946618 1.99e-01 100 chrIV:992676-993220 5.13e-01 100 chrIV:1013673-1013990 2.29e-01 100 chrIV:1016983-1017524 1.43e-06 13_[+1(1.45e-10)]_65 chrIV:1075306-1075745 6.59e-09 6_[+1(3.90e-10)]_11_[-3(6.78e-06)]_\ 31 chrIV:1095167-1095686 2.21e-16 3_[+1(9.71e-10)]_23_[+2(3.05e-11)]_\ 25 chrIV:1150707-1151155 3.43e-06 30_[-3(9.20e-09)]_40 chrIV:1166231-1166742 4.64e-01 100 chrIV:1175592-1176073 2.01e-07 56_[-2(8.57e-09)]_17 chrIV:1200938-1201972 8.22e-01 100 chrIV:1236523-1237933 7.43e-01 100 chrIV:1300731-1301400 7.71e-02 100 chrIV:1305375-1307143 6.49e-01 100 chrIV:1307300-1307515 6.80e-01 100 chrIV:1352304-1353110 9.82e-01 100 chrIV:1354414-1356104 4.17e-01 100 chrIV:1359349-1360817 3.54e-01 100 chrIV:1401036-1401885 9.49e-01 100 chrIV:1450633-1451915 9.94e-01 100 chrIV:1461201-1461850 7.68e-01 100 chrIV:1489124-1489840 9.99e-01 100 chrIX:68160-68954 2.51e-01 100 chrIX:83672-84838 4.41e-01 100 chrIX:99597-100142 6.00e-01 100 chrIX:174659-175683 1.00e+00 100 chrIX:183294-183698 4.41e-20 3_[+1(4.82e-11)]_12_[-3(1.85e-13)]_\ 33 chrIX:197305-197854 8.52e-01 100 chrIX:210658-210938 4.90e-01 100 chrIX:248514-249014 9.31e-01 100 chrIX:254192-254560 7.40e-02 100 chrIX:257361-257918 7.76e-01 100 chrIX:299997-300672 6.79e-01 100 chrIX:315977-318258 9.97e-01 100 chrIX:323387-324590 3.62e-01 100 chrIX:325548-326018 3.71e-16 24_[-2(5.90e-12)]_4_[-1(3.15e-09)]_\ 23 chrIX:335963-336646 6.23e-01 100 chrIX:370255-370602 3.49e-07 78_[-1(1.45e-10)] chrIX:380075-380926 7.77e-01 100 chrIX:426685-427135 8.56e-01 100 chrIX:427339-427884 4.25e-01 100 chrV:6195-6767 8.15e-01 100 chrV:53460-53971 6.66e-01 100 chrV:61172-62135 6.98e-01 100 chrV:69102-69309 4.21e-03 8_[+3(2.13e-05)]_62 chrV:77541-79421 1.18e-01 100 chrV:85104-86252 4.24e-01 100 chrV:86420-86781 1.26e-09 63_[-2(1.00e-09)]_10 chrV:99705-100284 9.79e-01 100 chrV:117578-118311 2.48e-01 100 chrV:130978-131369 6.15e-05 [-3(6.57e-09)]_70 chrV:135217-136081 8.54e-01 100 chrV:138469-140920 4.83e-01 100 chrV:176835-177405 3.89e-07 68_[-1(1.45e-10)]_10 chrV:207360-207523 5.10e-02 5_[-1(2.48e-05)]_73 chrV:249788-250531 3.42e-03 50_[+1(4.58e-05)]_28 chrV:270370-270670 9.93e-01 100 chrV:288189-288752 2.36e-10 32_[+1(8.38e-06)]_13_[+2(5.90e-12)]_\ 6 chrV:305427-307410 9.61e-01 100 chrV:311740-312293 2.92e-06 66_[+1(1.45e-10)]_12 chrV:354790-355288 3.59e-01 100 chrV:362129-362540 3.79e-01 100 chrV:362737-363287 9.65e-01 100 chrV:396134-397939 4.44e-01 100 chrV:423081-423610 8.17e-01 100 chrV:431037-431922 9.62e-01 100 chrV:434401-435128 7.65e-01 100 chrV:435341-435946 5.17e-01 100 chrV:438512-438960 2.11e-15 13_[+3(7.36e-13)]_12_[-1(1.24e-09)]_\ 23 chrV:441869-442689 4.42e-01 100 chrV:443058-443340 1.62e-07 62_[+1(4.82e-11)]_16 chrV:469258-469899 9.83e-01 100 chrV:470115-470370 7.94e-01 100 chrV:486693-487664 9.59e-01 100 chrV:492244-492425 2.14e-03 77_[+1(8.13e-07)]_1 chrV:550938-551572 4.13e-01 100 chrVI:4526-4770 8.41e-01 100 chrVI:64154-65636 5.89e-01 100 chrVI:82480-84740 3.90e-01 100 chrVI:95409-95925 3.28e-01 100 chrVI:97677-98100 5.04e-01 100 chrVI:101368-101863 2.79e-01 100 chrVI:137206-137810 4.81e-09 37_[+1(8.18e-08)]_4_[+2(1.54e-08)]_\ 10 chrVI:157903-158263 7.71e-01 100 chrVI:162013-162401 7.70e-07 70_[+3(6.30e-11)] chrVI:167275-167696 8.84e-08 13_[-2(1.93e-05)]_18_[-1(4.66e-08)]_\ 20 chrVI:180684-181712 7.70e-01 100 chrVI:191255-191749 5.61e-02 70_[+1(7.54e-05)]_8 chrVI:210454-211155 5.02e-01 100 chrVI:220476-222158 9.92e-01 100 chrVI:223263-224156 6.71e-01 100 chrVI:226508-226947 1.80e-15 20_[+1(6.63e-10)]_4_[+2(5.53e-11)]_\ 27 chrVII:792-2084 9.52e-01 100 chrVII:110265-110788 6.70e-01 100 chrVII:115266-115730 8.18e-10 49_[-2(5.53e-11)]_24 chrVII:122062-122518 1.80e-15 38_[-2(5.53e-11)]_4_[-1(6.63e-10)]_\ 9 chrVII:148193-149549 9.99e-01 100 chrVII:185535-185937 1.80e-15 37_[+1(6.63e-10)]_4_[+2(5.53e-11)]_\ 10 chrVII:205073-205770 2.79e-01 100 chrVII:254131-254701 9.27e-01 100 chrVII:255193-255644 7.68e-01 100 chrVII:276987-278346 3.42e-01 100 chrVII:287165-287733 9.34e-05 20_[+2(8.18e-08)]_53 chrVII:310398-312098 9.98e-01 100 chrVII:319256-320072 7.84e-02 37_[+1(4.58e-05)]_41 chrVII:328388-329261 9.79e-01 100 chrVII:364887-366621 7.71e-01 100 chrVII:371194-371517 2.58e-01 100 chrVII:401430-401620 5.72e-07 61_[+1(1.45e-10)]_17 chrVII:405461-405808 9.19e-01 100 chrVII:411691-412593 8.33e-01 100 chrVII:422877-423352 2.43e-09 27_[+3(1.00e-11)]_43 chrVII:437325-437927 6.44e-01 100 chrVII:438540-439814 4.52e-01 100 chrVII:440554-441013 5.44e-10 37_[+2(3.05e-11)]_36 chrVII:479221-482754 1.59e-01 100 chrVII:531402-531803 4.85e-03 34_[+1(7.79e-05)]_1_[+3(9.72e-05)]_\ 13 chrVII:533850-535198 8.29e-01 100 chrVII:541710-542150 1.63e-06 9_[-1(1.45e-10)]_69 chrVII:544413-544924 1.88e-01 [-3(9.72e-05)]_70 chrVII:555162-556687 9.65e-01 100 chrVII:561451-561708 9.68e-01 100 chrVII:648766-649358 1.44e-01 100 chrVII:661491-661989 4.50e-07 67_[-2(1.81e-08)]_6 chrVII:700369-701158 1.53e-05 11_[-1(5.07e-08)]_67 chrVII:706940-707195 9.96e-01 100 chrVII:726388-728071 5.75e-01 100 chrVII:730956-731395 6.65e-12 22_[-2(1.54e-08)]_4_[-1(8.18e-08)]_\ 25 chrVII:736190-736919 9.98e-01 100 chrVII:738639-739477 4.34e-01 100 chrVII:774137-774652 1.99e-17 4_[+3(1.42e-11)]_11_[-1(8.56e-10)]_\ 33 chrVII:779358-779761 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chrVIII:174620-176349 9.82e-01 100 chrVIII:237674-238090 9.00e-14 25_[+1(9.71e-10)]_23_[+2(3.05e-11)]_\ 3 chrVIII:296819-297274 3.89e-01 100 chrVIII:310448-311251 4.20e-01 100 chrVIII:358316-358822 2.68e-10 13_[+2(3.05e-11)]_60 chrVIII:382247-383361 8.50e-01 100 chrVIII:388702-389209 2.41e-07 60_[-3(5.15e-11)]_10 chrVIII:451341-452964 4.25e-01 100 chrVIII:466971-467169 6.55e-04 9_[-1(2.25e-07)]_69 chrVIII:475514-475901 4.03e-06 58_[+1(3.90e-10)]_20 chrVIII:505800-506223 9.62e-01 100 chrVIII:555718-556541 9.53e-01 100 chrX:59010-59388 8.95e-01 100 chrX:73107-76489 7.30e-01 100 chrX:89568-90461 5.57e-01 100 chrX:115804-116248 4.70e-01 100 chrX:123553-124507 7.31e-01 100 chrX:157407-157923 7.16e-01 100 chrX:160044-160252 7.67e-01 100 chrX:197166-197521 1.99e-17 29_[+1(8.56e-10)]_11_[-3(1.42e-11)]_\ 8 chrX:204521-205002 1.64e-05 23_[+3(9.72e-05)]_10_[-1(1.83e-07)]_\ 15 chrX:233690-234184 1.75e-06 61_[-2(4.16e-09)]_12 chrX:354159-354586 8.14e-01 100 chrX:355204-355758 1.64e-05 24_[+3(9.72e-05)]_10_[-1(1.83e-07)]_\ 14 chrX:374236-374850 1.95e-12 22_[+1(8.56e-10)]_4_[+2(2.32e-09)]_\ 25 chrX:378137-378597 7.32e-10 42_[+3(7.36e-13)]_28 chrX:390853-391612 9.97e-01 100 chrX:391822-392130 1.11e-01 100 chrX:396516-397025 8.44e-14 15_[+1(7.54e-10)]_9_[-3(6.30e-11)]_\ 24 chrX:414497-415239 9.70e-01 100 chrX:415706-416294 3.90e-05 50_[+2(8.18e-08)]_23 chrX:422689-423361 1.61e-04 2_[-1(3.32e-08)]_24_[+1(3.86e-05)]_\ 30 chrX:424287-424721 5.45e-10 31_[-3(1.63e-10)]_39 chrX:517680-518108 3.30e-05 4_[+2(2.11e-08)]_69 chrX:523790-524410 1.63e-09 6_[+2(1.00e-09)]_67 chrX:531563-532226 5.26e-06 22_[-1(7.54e-10)]_56 chrX:538523-538818 9.99e-01 100 chrX:540948-541965 1.00e+00 100 chrX:542783-543652 7.73e-01 100 chrX:545401-545744 1.05e-01 100 chrX:607530-608155 7.65e-01 100 chrX:608327-609065 8.37e-01 100 chrX:617695-618151 8.43e-11 45_[+3(6.21e-12)]_25 chrX:651264-651616 7.72e-02 13_[-3(2.80e-05)]_57 chrX:652023-652597 7.10e-01 100 chrX:690548-690869 2.19e-01 100 chrX:702972-703678 5.45e-01 100 chrX:745079-745750 2.16e-01 100 chrXI:773-1087 7.98e-01 100 chrXI:46713-46998 9.24e-01 100 chrXI:67794-68048 4.73e-01 100 chrXI:74427-74826 1.31e-07 58_[-2(1.54e-08)]_15 chrXI:84017-84430 5.45e-10 34_[+3(1.63e-10)]_36 chrXI:99748-99982 2.99e-01 100 chrXI:108401-110140 2.67e-01 100 chrXI:140774-141314 3.04e-07 33_[+1(1.45e-10)]_45 chrXI:141685-143399 2.09e-01 100 chrXI:158169-159348 8.48e-01 100 chrXI:162429-162679 1.07e-06 18_[+2(2.32e-09)]_55 chrXI:163466-164348 4.77e-01 100 chrXI:202286-203259 4.76e-01 100 chrXI:219553-220102 9.88e-01 100 chrXI:258458-258941 2.73e-01 100 chrXI:259136-259843 4.50e-01 100 chrXI:260435-260853 9.40e-02 100 chrXI:302673-303230 9.34e-05 25_[-2(8.18e-08)]_48 chrXI:307980-308425 2.11e-15 1_[+1(1.24e-09)]_12_[-3(7.36e-13)]_\ 35 chrXI:313235-313975 5.37e-01 100 chrXI:326451-327512 2.07e-01 100 chrXI:333632-334842 1.00e+00 100 chrXI:379452-379917 7.32e-10 45_[+3(7.36e-13)]_25 chrXI:382186-382463 1.64e-01 100 chrXI:430920-431669 5.51e-01 100 chrXI:457574-459003 9.48e-01 100 chrXI:490731-491213 1.75e-06 55_[-2(4.16e-09)]_18 chrXI:512631-513515 7.75e-01 100 chrXI:517380-518173 9.97e-01 100 chrXI:518905-520667 3.35e-01 100 chrXI:578687-579296 4.98e-10 33_[-2(5.53e-11)]_40 chrXI:618744-619386 9.01e-01 100 chrXI:644914-645858 4.15e-01 100 chrXI:666596-666794 6.35e-02 21_[+3(8.02e-05)]_49 chrXII:5560-5805 2.92e-01 100 chrXII:48695-49177 5.71e-01 100 chrXII:92345-92841 1.27e-13 4_[+3(5.15e-11)]_41_[-1(5.11e-10)]_\ 3 chrXII:167736-168281 1.58e-09 30_[+2(1.00e-09)]_43 chrXII:201715-202627 5.11e-02 100 chrXII:214713-215069 1.08e-06 51_[+1(1.45e-10)]_27 chrXII:231961-234131 8.60e-02 100 chrXII:241614-243426 9.13e-01 100 chrXII:260962-263960 5.67e-01 100 chrXII:281928-282306 8.80e-01 100 chrXII:350977-351584 5.13e-01 100 chrXII:366035-366582 7.97e-02 23_[+1(8.05e-05)]_55 chrXII:368748-370229 9.55e-01 100 chrXII:370518-371098 1.69e-01 100 chrXII:374196-374667 1.85e-03 14_[-1(8.13e-07)]_64 chrXII:424183-424498 1.82e-02 69_[-2(5.58e-05)]_4 chrXII:426917-427464 1.75e-04 31_[-1(1.83e-07)]_47 chrXII:448505-448990 9.73e-01 100 chrXII:459576-460759 1.72e-01 100 chrXII:498487-499735 9.60e-02 100 chrXII:521495-522459 3.62e-01 100 chrXII:592177-592723 5.54e-01 100 chrXII:605159-605639 2.30e-10 53_[-3(4.62e-09)]_17 chrXII:627719-627887 7.96e-01 100 chrXII:628145-629115 9.85e-01 100 chrXII:636702-639938 3.84e-02 33_[-1(5.99e-05)]_45 chrXII:656840-657212 3.23e-08 [-3(1.42e-11)]_70 chrXII:673512-675003 7.56e-01 100 chrXII:687669-687852 5.85e-01 100 chrXII:713138-713620 1.15e-01 100 chrXII:728295-728564 9.82e-02 100 chrXII:732010-732307 1.84e-02 50_[-1(1.95e-05)]_28 chrXII:734598-735603 4.77e-01 100 chrXII:780804-781894 3.13e-01 100 chrXII:783904-784513 8.35e-01 100 chrXII:793732-795294 6.50e-01 100 chrXII:796358-797795 9.60e-01 100 chrXII:805985-806831 4.72e-01 100 chrXII:809756-815341 3.76e-01 100 chrXII:818502-820271 3.50e-01 100 chrXII:837724-839373 1.60e-01 100 chrXII:874894-876375 9.77e-01 100 chrXII:897662-899067 6.35e-01 100 chrXII:902899-904769 1.45e-01 100 chrXII:921725-922611 2.12e-01 100 chrXII:932047-932521 4.96e-01 100 chrXII:962816-963277 5.45e-10 29_[-3(1.63e-10)]_41 chrXII:975798-976103 9.77e-01 100 chrXII:1017534-1017819 5.44e-01 100 chrXII:1018120-1019580 3.53e-01 100 chrXII:1028189-1028625 9.93e-01 100 chrXII:1051944-1052220 6.58e-08 48_[+1(4.82e-11)]_30 chrXII:1064006-1064169 5.98e-01 100 chrXIII:91423-92111 1.05e-02 100 chrXIII:131592-132117 1.95e-12 30_[+1(8.56e-10)]_4_[+2(2.32e-09)]_\ 17 chrXIII:145873-146318 3.70e-01 100 chrXIII:168245-169007 9.83e-01 100 chrXIII:195929-196308 1.14e-06 9_[+1(5.11e-10)]_69 chrXIII:224064-224389 4.00e-01 100 chrXIII:225158-226628 6.65e-01 100 chrXIII:259034-259460 1.69e-09 5_[+2(1.00e-09)]_68 chrXIII:290565-291060 2.16e-07 78_[-1(1.45e-10)] chrXIII:296796-298878 6.03e-01 100 chrXIII:302883-303108 6.17e-03 100 chrXIII:320985-321586 2.90e-02 69_[-2(1.80e-05)]_4 chrXIII:352093-352531 2.28e-16 27_[-2(3.05e-11)]_22_[-1(9.71e-10)]_\ 2 chrXIII:362944-363958 1.59e-01 100 chrXIII:372245-372746 2.11e-15 9_[+1(1.24e-09)]_12_[-3(7.36e-13)]_\ 27 chrXIII:378892-379630 6.18e-01 100 chrXIII:420355-420857 3.52e-06 41_[+1(1.24e-09)]_37 chrXIII:463426-463849 1.09e-03 6_[-1(1.83e-07)]_72 chrXIII:480386-480925 1.80e-15 25_[+1(6.63e-10)]_4_[+2(5.53e-11)]_\ 22 chrXIII:499202-500698 6.71e-01 100 chrXIII:504645-505222 2.98e-09 11_[+3(1.00e-11)]_59 chrXIII:551032-551846 5.85e-01 100 chrXIII:572612-573248 4.91e-12 12_[+1(3.32e-08)]_4_[+2(8.57e-09)]_\ 35 chrXIII:586428-587220 2.81e-01 100 chrXIII:650802-651120 9.87e-01 100 chrXIII:731554-733583 9.08e-01 100 chrXIII:747748-748142 1.46e-12 6_[+1(8.56e-10)]_4_[+2(2.32e-09)]_\ 41 chrXIII:748299-749082 3.75e-01 100 chrXIII:753011-754973 9.61e-01 100 chrXIII:768194-768448 8.96e-01 100 chrXIII:808114-808511 2.42e-06 25_[-3(4.62e-09)]_45 chrXIII:837709-838208 8.84e-08 31_[-2(1.93e-05)]_18_[-1(4.66e-08)]_\ 2 chrXIII:859518-860283 1.26e-02 35_[-3(5.82e-05)]_35 chrXIV:61957-64272 4.78e-01 100 chrXIV:96020-96467 3.13e-06 57_[+1(3.41e-10)]_21 chrXIV:102583-103046 2.37e-01 100 chrXIV:104581-105135 2.55e-13 6_[-2(5.90e-12)]_4_[-1(3.15e-09)]_\ 41 chrXIV:173317-174609 9.28e-01 100 chrXIV:240891-242017 6.34e-01 100 chrXIV:253193-253917 4.12e-01 100 chrXIV:302623-303797 6.45e-01 100 chrXIV:330440-332520 5.48e-01 100 chrXIV:374664-375083 5.84e-10 55_[-2(3.05e-11)]_18 chrXIV:442862-445590 4.86e-01 100 chrXIV:493912-495618 5.58e-01 100 chrXIV:499300-499487 5.22e-01 100 chrXIV:499696-500695 2.20e-01 100 chrXIV:518112-519134 2.82e-01 100 chrXIV:546539-547437 5.83e-01 100 chrXIV:560322-560790 9.32e-01 100 chrXIV:568053-568427 2.10e-01 100 chrXIV:569655-570051 1.04e-06 73_[+1(4.82e-11)]_5 chrXIV:576700-577520 1.00e+00 100 chrXIV:585516-586254 1.24e-01 100 chrXIV:602063-602546 5.96e-13 57_[+3(1.85e-13)]_13 chrXIV:631639-632015 1.65e-08 78_[+1(4.20e-13)] chrXIV:632496-632833 2.44e-05 26_[-1(8.18e-08)]_52 chrXIV:725621-726358 9.91e-01 100 chrXIV:783704-784331 2.33e-01 100 chrXV:79720-80171 7.10e-01 100 chrXV:92817-94811 1.58e-01 100 chrXV:109542-110650 2.40e-01 100 chrXV:110857-111710 8.73e-01 100 chrXV:113501-113881 3.42e-01 100 chrXV:161099-161748 9.74e-01 100 chrXV:167967-168456 1.57e-01 100 chrXV:216272-216746 1.03e-01 100 chrXV:226447-226884 8.44e-14 5_[+1(7.54e-10)]_9_[-3(6.30e-11)]_\ 34 chrXV:228056-228630 1.31e-07 48_[-2(1.54e-08)]_25 chrXV:253797-254118 6.21e-01 100 chrXV:274466-274986 1.18e-06 6_[-2(6.01e-09)]_32_[-1(7.54e-05)]_\ 13 chrXV:281757-282918 9.97e-01 100 chrXV:287156-288399 4.68e-01 100 chrXV:300862-301701 9.55e-01 100 chrXV:340142-340716 9.76e-01 100 chrXV:353912-354320 2.47e-10 10_[+2(5.90e-12)]_63 chrXV:438415-439463 2.09e-01 100 chrXV:444652-446321 3.00e-01 100 chrXV:464282-465088 7.11e-01 100 chrXV:487432-487724 6.73e-01 100 chrXV:504933-505550 5.34e-02 100 chrXV:571609-572227 6.75e-01 100 chrXV:594307-594628 9.98e-01 100 chrXV:639205-639783 5.85e-01 100 chrXV:663503-664071 4.22e-01 100 chrXV:678242-679181 7.95e-01 100 chrXV:710073-710489 9.89e-04 9_[-1(4.29e-07)]_69 chrXV:779635-780956 7.96e-01 100 chrXV:797110-798418 4.73e-01 100 chrXV:854031-854788 9.23e-02 100 chrXV:866507-867911 4.85e-01 100 chrXV:881249-882378 1.99e-01 100 chrXV:901409-901627 5.55e-01 100 chrXV:968113-968475 1.59e-01 100 chrXV:976380-976697 5.97e-01 100 chrXV:978789-979182 3.47e-01 100 chrXV:979726-981284 9.96e-01 100 chrXV:986731-987560 9.75e-01 100 chrXV:1004077-1004915 9.76e-01 100 chrXV:1025711-1026507 6.94e-01 100 chrXV:1027928-1029659 9.83e-01 100 chrXVI:55904-56350 1.61e-01 100 chrXVI:75488-77039 5.98e-01 100 chrXVI:188599-188971 1.11e-01 100 chrXVI:210024-210462 3.89e-07 8_[+1(1.45e-10)]_70 chrXVI:279986-280210 3.01e-01 100 chrXVI:281621-282164 2.75e-01 100 chrXVI:302467-304506 3.38e-01 100 chrXVI:338752-339306 8.36e-01 100 chrXVI:378649-379014 6.16e-01 100 chrXVI:404568-405992 6.40e-01 100 chrXVI:406181-408271 1.77e-01 100 chrXVI:432585-434345 7.53e-01 100 chrXVI:435690-436196 8.65e-09 9_[+1(1.59e-07)]_4_[+2(2.29e-07)]_\ 38 chrXVI:520010-520550 9.61e-01 100 chrXVI:559998-560459 3.81e-06 29_[+1(9.71e-10)]_49 chrXVI:571997-572515 2.74e-07 62_[+3(6.30e-11)]_8 chrXVI:581853-582284 4.67e-09 53_[-2(5.53e-11)]_20 chrXVI:622365-622864 3.21e-10 30_[+2(3.05e-11)]_43 chrXVI:689333-689847 2.84e-14 34_[-2(5.90e-12)]_13_[-1(8.38e-06)]_\ 4 chrXVI:699622-700687 1.89e-01 100 chrXVI:731875-733130 7.98e-02 17_[-3(9.72e-05)]_53 chrXVI:744078-744558 2.56e-10 24_[-2(1.81e-08)]_4_[-1(3.13e-07)]_\ 23 chrXVI:768981-769488 2.83e-06 32_[+1(6.67e-09)]_46 chrXVI:775643-776124 9.56e-01 100 chrXVI:785502-787252 5.73e-01 100 chrXVI:794458-795048 7.04e-01 100 chrXVI:810576-811010 8.91e-01 100 chrXVI:819318-819782 4.41e-20 28_[+3(1.85e-13)]_12_[-1(4.82e-11)]_\ 8 chrXVI:856814-857105 1.09e-09 2_[-2(4.57e-07)]_4_[-1(8.56e-10)]_\ 45 chrXVI:860149-860640 8.44e-14 34_[+3(6.30e-11)]_9_[-1(7.54e-10)]_\ 5 chrXVI:879425-880537 3.23e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************