******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--RPD3/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:301074-301621 1.0000 100 chrVIII:372693-374111 1.0000 100 chrXV:159231-160747 1.0000 100 chrVII:254225-254770 1.0000 100 chrXI:426209-427146 1.0000 100 chrI:76852-77217 1.0000 100 chrIV:1278407-1279075 1.0000 100 chrXVI:821616-822231 1.0000 100 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chrXIII:754533-756247 1.0000 100 chrV:363607-364490 1.0000 100 chrIV:995341-995797 1.0000 100 chrVII:640724-642055 1.0000 100 chrVII:531415-531769 1.0000 100 chrVIII:410999-411781 1.0000 100 chrVIII:34377-36174 1.0000 100 chrXII:242174-243528 1.0000 100 chrXV:722838-725645 1.0000 100 chrXIII:892909-895468 1.0000 100 chrXV:619159-621369 1.0000 100 chrXI:430532-431320 1.0000 100 chrIV:1162502-1164712 1.0000 100 chrXV:622088-622369 1.0000 100 chrXII:201608-202699 1.0000 100 chrXIV:65253-66790 1.0000 100 chrXV:877732-878073 1.0000 100 chrIV:206388-209686 1.0000 100 chrII:591331-591838 1.0000 100 chrXI:356181-356514 1.0000 100 chrVII:609345-610067 1.0000 100 chrVII:363597-364443 1.0000 100 chrII:606226-607420 1.0000 100 chrXIV:417561-418525 1.0000 100 chrVII:545113-546073 1.0000 100 chrX:233385-233485 1.0000 100 chrXIII:837740-838149 1.0000 100 chrIII:90804-91094 1.0000 100 chrXV:867049-868879 1.0000 100 chrXIV:302614-303837 1.0000 100 chrXIII:24028-25984 1.0000 100 chrII:168364-169650 1.0000 100 chrIII:262566-263120 1.0000 100 chrIX:126958-130198 1.0000 100 chrXV:968799-969028 1.0000 100 chrX:531481-531581 1.0000 100 chrV:435321-435931 1.0000 100 chrXII:447936-448978 1.0000 100 chrXIV:412803-416188 1.0000 100 chrX:355217-355317 1.0000 100 chrX:396545-396645 1.0000 100 chrIII:177057-178799 1.0000 100 chrXI:337713-338749 1.0000 100 chrVII:765898-766762 1.0000 100 chrXII:1012113-1012561 1.0000 100 chrXVI:860129-860687 1.0000 100 chrII:59553-60789 1.0000 100 chrXI:67810-69105 1.0000 100 chrXVI:627249-627604 1.0000 100 chrV:268916-270202 1.0000 100 chrXII:374218-374679 1.0000 100 chrXIV:253180-254148 1.0000 100 chrXVI:775660-776051 1.0000 100 chrXIII:296908-298892 1.0000 100 chrXIII:352073-352629 1.0000 100 chrXIV:575044-576189 1.0000 100 chrVII:122091-122820 1.0000 100 chrXV:778211-779468 1.0000 100 chrII:555832-558179 1.0000 100 chrVII:695586-697084 1.0000 100 chrXIV:721142-723233 1.0000 100 chrIV:525432-526029 1.0000 100 chrX:374182-374282 1.0000 100 chrXIII:431902-432383 1.0000 100 chrVII:328409-329257 1.0000 100 chrXII:498767-500273 1.0000 100 chrVI:224293-225797 1.0000 100 chrIV:1494486-1495908 1.0000 100 chrVIII:491973-493681 1.0000 100 chrIV:43993-44557 1.0000 100 chrIV:359397-359767 1.0000 100 chrXVI:66977-67521 1.0000 100 chrIX:388730-390968 1.0000 100 chrVII:824438-827326 1.0000 100 chrXII:198240-199725 1.0000 100 chrXII:514847-515146 1.0000 100 chrVII:845307-845965 1.0000 100 chrVIII:175051-175768 1.0000 100 chrVII:592124-592752 1.0000 100 chrXVI:246421-246690 1.0000 100 chrXII:166705-167459 1.0000 100 chrXIII:300804-302517 1.0000 100 chrXIII:225864-226975 1.0000 100 chrIX:395856-397117 1.0000 100 chrXV:505694-507135 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--RPD3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--RPD3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--RPD3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.304 C 0.196 G 0.196 T 0.304 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--RPD3/background): A 0.310 C 0.190 G 0.190 T 0.310 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAWAYGCCCMNDSBGGGRDTCGAACC MEME-1 width = 30 sites = 38 llr = 791 E-value = 9.3e-130 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAWAYGCCCMNDSBGGGRDTCGAACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 98988865112:23342:22:64:::aa:1 pos.-specific C :::1::115165653:5421::2:7:::a7 probability G :11111:2:71221243467a42::a:::1 matrix T 111111424222:122:2:1::2a3::::2 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * * ****** Entropy 1.2 * * ****** (30.0 bits) 1.0 *** ** * * ** ******* 0.7 ****** ***** ****** ******* 0.5 ******* ****** ******* ******* 0.2 ************** ******* ******* 0.0 ------------------------------ Multilevel AAAAAAAACGCCCCAGCCGGGAATCGAACC consensus TTTT GAACAGGCA GT T sequence T GTAT G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWAYGCCCMNDSBGGGRDTCGAACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrX:396545-396645 + 31 4.61e-13 AGAAATATAA AAAAGAAATGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrXIII:463460-463844 - 2 4.61e-13 CTGGTCTGAT AAAAAAATCTCCGCGACGGGGAATTGAACC C chrX:204487-204587 - 71 4.61e-13 . AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrIX:336116-336651 + 8 4.61e-13 TTATGGT AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrXII:426922-427462 - 40 7.10e-13 TAGAAGCTTA AAAAAATTCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrX:531481-531581 - 68 3.14e-12 AGA AAAGAAACTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrXII:374218-374679 - 8 4.59e-12 TTGTCGGAGC AAAAAAATCTTCCCCGCCAGGACTTGAACC TGGAATC chrXIII:290597-291164 - 21 4.59e-12 ATTTCTTCAA AAAGAAAACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrXVI:860129-860687 - 70 5.89e-12 A ATAAAATCTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrXI:490755-491345 - 19 6.66e-12 TATAAAAGTA AAAAAATTCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrXIII:572562-573171 + 59 6.66e-12 AAGTTTTGAA AAAAAATGTGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrVI:180640-181263 + 65 2.16e-11 TATCCTTAAA AAAAGGACTGCGCAAGCCCGGAATCGAACC GGGGGC chrXVI:581841-582443 - 21 3.02e-11 CCATGCAATA AAAAAGAAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrXIV:632516-632831 - 28 4.19e-11 CTGAAATAAG AAAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrVII:541741-542146 - 7 4.19e-11 GAGGTAAGAA AAAGAACACTCCGATACGGGGAGTCGAACC CCGGTC chrXV:274487-275011 - 53 8.73e-11 ATTCACAAAA AAGAAATGCGTCACAGACAGGATTCGAACC TGCGCAGGTA chrVI:191319-191729 + 31 8.73e-11 AAATTTAAAA AAGAAATGCGTCACAGACAGGATTCGAACC TGCGCAGGTA chrX:422745-422845 - 1 8.73e-11 TCACAAAAAA AGAAAATGTGCTCCAGGGGAGGTTCGAACT chrX:390842-390942 + 8 1.07e-10 ATACGTA TAAAAATATGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrX:374182-374282 + 11 1.93e-10 ATCACGGAAG AAACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrXIII:131632-132053 + 25 1.93e-10 AAAAAAGAAG AAACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrXII:167719-168228 + 13 1.93e-10 AAGAAAAAGA AAAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrXVI:689346-689866 - 69 2.33e-10 AA AAATAATACGACACCAGCAGGATTTGAACC AGCGCGGGCA chrXIV:96049-96429 + 44 2.56e-10 CAATGCCATC AAAAAATTTGAGCGGTACGAGAATCGAACC CGTGTCCCCA chrIV:802592-802821 + 67 2.56e-10 TAGAGTAAAA ATAAAAAGAGGTCCTACCCGGATTCGAACC GGGG chrVI:210421-210879 + 11 3.39e-10 AAATTTCAGA AAAAAATATCTCCCGGGGGCGAGTCGAACG CCCGATCTCA chrVI:167271-167728 - 55 3.39e-10 GCAAGATTTA AAAAAATATCTCCCGGGGGCGAGTCGAACG CCCGATCTCA chrIV:83342-83834 - 59 3.39e-10 AAGAAAAAAA ATTAAACTTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrVI:226449-226946 + 33 4.06e-10 TAGAGAAAAA AAGAGATAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrV:130798-131376 + 37 4.44e-10 TGAGCGGGGG AAAAAAATAGGTCTTACCCGGATTCGAACC GGGGTTGTTC chrXVI:810603-810833 - 60 5.80e-10 CTAATTTAGT AAAAATTACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrXV:438455-439029 - 25 7.52e-10 ACTGACAAAA ATAAAGAACTCCTCATAGGGGGCTCGAACC CCTGACATTT chrVIII:358261-358764 + 8 1.14e-09 ATCGTTA AAAAAATATGCGAATTCTGTGGATCGAACA CAGGACCTCC chrIII:227742-228296 - 52 1.46e-09 TATTTAAAAA AAATTAAACGACACCAGCAGGATTTGAACC AGCGCGGGCA chrXVI:435660-436181 + 15 1.58e-09 TTCTTTGGAA AAAAAGAAAGCTCGCACTCAGGATCGAACT AAGGACCAAC chrXVI:622306-622827 + 16 5.66e-09 GCAGGTCGAA AAAATAAATGCGAATTCTGTGGATCGAACA CAGGACCTCC chrXIII:352073-352629 - 48 2.61e-08 AAAGTAAAAA AAAATTAATGCGAATTCTGTGGATCGAACA CAGGACCTCC chrVIII:475507-475877 + 56 5.04e-08 AAAAAATCGA TGTTAAAATGTTCCAACCGAGGATCGAACT CGGGACCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWAYGCCCMNDSBGGGRDTCGAACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:396545-396645 4.6e-13 30_[+1]_40 chrXIII:463460-463844 4.6e-13 1_[-1]_69 chrX:204487-204587 4.6e-13 70_[-1] chrIX:336116-336651 4.6e-13 7_[+1]_63 chrXII:426922-427462 7.1e-13 39_[-1]_31 chrX:531481-531581 3.1e-12 67_[-1]_3 chrXII:374218-374679 4.6e-12 7_[-1]_63 chrXIII:290597-291164 4.6e-12 20_[-1]_50 chrXVI:860129-860687 5.9e-12 69_[-1]_1 chrXI:490755-491345 6.7e-12 18_[-1]_52 chrXIII:572562-573171 6.7e-12 58_[+1]_12 chrVI:180640-181263 2.2e-11 64_[+1]_6 chrXVI:581841-582443 3e-11 20_[-1]_50 chrXIV:632516-632831 4.2e-11 27_[-1]_43 chrVII:541741-542146 4.2e-11 6_[-1]_64 chrXV:274487-275011 8.7e-11 52_[-1]_18 chrVI:191319-191729 8.7e-11 30_[+1]_40 chrX:422745-422845 8.7e-11 [-1]_70 chrX:390842-390942 1.1e-10 7_[+1]_63 chrX:374182-374282 1.9e-10 10_[+1]_60 chrXIII:131632-132053 1.9e-10 24_[+1]_46 chrXII:167719-168228 1.9e-10 12_[+1]_58 chrXVI:689346-689866 2.3e-10 68_[-1]_2 chrXIV:96049-96429 2.6e-10 43_[+1]_27 chrIV:802592-802821 2.6e-10 66_[+1]_4 chrVI:210421-210879 3.4e-10 10_[+1]_60 chrVI:167271-167728 3.4e-10 54_[-1]_16 chrIV:83342-83834 3.4e-10 58_[-1]_12 chrVI:226449-226946 4.1e-10 32_[+1]_38 chrV:130798-131376 4.4e-10 36_[+1]_34 chrXVI:810603-810833 5.8e-10 59_[-1]_11 chrXV:438455-439029 7.5e-10 24_[-1]_46 chrVIII:358261-358764 1.1e-09 7_[+1]_63 chrIII:227742-228296 1.5e-09 51_[-1]_19 chrXVI:435660-436181 1.6e-09 14_[+1]_56 chrXVI:622306-622827 5.7e-09 15_[+1]_55 chrXIII:352073-352629 2.6e-08 47_[-1]_23 chrVIII:475507-475877 5e-08 55_[+1]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWAYGCCCMNDSBGGGRDTCGAACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAWAYGCCCMNDSBGGGRDTCGAACC width=30 seqs=38 chrX:396545-396645 ( 31) AAAAGAAATGCGCAAGCCCGGAATCGAACC 1 chrXIII:463460-463844 ( 2) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrX:204487-204587 ( 71) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrIX:336116-336651 ( 8) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrXII:426922-427462 ( 40) AAAAAATTCTCCGCGACGGGGAATTGAACC 1 chrX:531481-531581 ( 68) AAAGAAACTGCGCAAGCCCGGAATCGAACC 1 chrXII:374218-374679 ( 8) AAAAAAATCTTCCCCGCCAGGACTTGAACC 1 chrXIII:290597-291164 ( 21) AAAGAAAACTCCGATACGGGGAGTCGAACC 1 chrXVI:860129-860687 ( 70) ATAAAATCTGCGCAAGCCCGGAATCGAACC 1 chrXI:490755-491345 ( 19) AAAAAATTCTTCCCCGCCAGGACTTGAACC 1 chrXIII:572562-573171 ( 59) AAAAAATGTGCTCCAGGGGAGGTTCGAACT 1 chrVI:180640-181263 ( 65) AAAAGGACTGCGCAAGCCCGGAATCGAACC 1 chrXVI:581841-582443 ( 21) AAAAAGAAAGCCCTGTAGGGGGCTCGAACC 1 chrXIV:632516-632831 ( 28) AAAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrVII:541741-542146 ( 7) AAAGAACACTCCGATACGGGGAGTCGAACC 1 chrXV:274487-275011 ( 53) AAGAAATGCGTCACAGACAGGATTCGAACC 1 chrVI:191319-191729 ( 31) AAGAAATGCGTCACAGACAGGATTCGAACC 1 chrX:422745-422845 ( 1) AGAAAATGTGCTCCAGGGGAGGTTCGAACT 1 chrX:390842-390942 ( 8) TAAAAATATGCTCCAGGGGAGGTTCGAACT 1 chrX:374182-374282 ( 11) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrXIII:131632-132053 ( 25) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrXII:167719-168228 ( 13) AAAAATAACGACAACTGCAGGACTCGAACC 1 chrXVI:689346-689866 ( 69) AAATAATACGACACCAGCAGGATTTGAACC 1 chrXIV:96049-96429 ( 44) AAAAAATTTGAGCGGTACGAGAATCGAACC 1 chrIV:802592-802821 ( 67) ATAAAAAGAGGTCCTACCCGGATTCGAACC 1 chrVI:210421-210879 ( 11) AAAAAATATCTCCCGGGGGCGAGTCGAACG 1 chrVI:167271-167728 ( 55) AAAAAATATCTCCCGGGGGCGAGTCGAACG 1 chrIV:83342-83834 ( 59) ATTAAACTTGCGCAAGCCCGGAATCGAACC 1 chrVI:226449-226946 ( 33) AAGAGATAAGCCCTGTAGGGGGCTCGAACC 1 chrV:130798-131376 ( 37) AAAAAAATAGGTCTTACCCGGATTCGAACC 1 chrXVI:810603-810833 ( 60) AAAAATTACGACCCCAGTGAGGGTTGAACT 1 chrXV:438455-439029 ( 25) ATAAAGAACTCCTCATAGGGGGCTCGAACC 1 chrVIII:358261-358764 ( 8) AAAAAATATGCGAATTCTGTGGATCGAACA 1 chrIII:227742-228296 ( 52) AAATTAAACGACACCAGCAGGATTTGAACC 1 chrXVI:435660-436181 ( 15) AAAAAGAAAGCTCGCACTCAGGATCGAACT 1 chrXVI:622306-622827 ( 16) AAAATAAATGCGAATTCTGTGGATCGAACA 1 chrXIII:352073-352629 ( 48) AAAATTAATGCGAATTCTGTGGATCGAACA 1 chrVIII:475507-475877 ( 56) TGTTAAAATGTTCCAACCGAGGATCGAACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWAYGCCCMNDSBGGGRDTCGAACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.3243 E= 9.3e-130 161 -1189 -1189 -256 144 -1189 -185 -156 149 -1189 -127 -256 135 -185 -127 -197 144 -1189 -127 -197 140 -1189 -85 -197 83 -185 -1189 35 69 -127 -5 -39 -123 132 -1189 35 -256 -185 179 -39 -97 167 -185 -75 -1189 147 32 -39 -56 167 -27 -355 14 147 -185 -197 3 47 32 -75 25 -1189 115 -56 -56 147 47 -1189 -1189 115 95 -56 -75 15 167 -1189 -56 -185 179 -197 -1189 -1189 239 -1189 97 -1189 105 -1189 35 -27 15 -39 -1189 -1189 -1189 169 -1189 195 -1189 -24 -1189 -1189 239 -1189 169 -1189 -1189 -1189 169 -1189 -1189 -1189 -1189 239 -1189 -1189 -197 185 -185 -75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWAYGCCCMNDSBGGGRDTCGAACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 38 E= 9.3e-130 0.947368 0.000000 0.000000 0.052632 0.842105 0.000000 0.052632 0.105263 0.868421 0.000000 0.078947 0.052632 0.789474 0.052632 0.078947 0.078947 0.842105 0.000000 0.078947 0.078947 0.815789 0.000000 0.105263 0.078947 0.552632 0.052632 0.000000 0.394737 0.500000 0.078947 0.184211 0.236842 0.131579 0.473684 0.000000 0.394737 0.052632 0.052632 0.657895 0.236842 0.157895 0.605263 0.052632 0.184211 0.000000 0.526316 0.236842 0.236842 0.210526 0.605263 0.157895 0.026316 0.342105 0.526316 0.052632 0.078947 0.315789 0.263158 0.236842 0.184211 0.368421 0.000000 0.421053 0.210526 0.210526 0.526316 0.263158 0.000000 0.000000 0.421053 0.368421 0.210526 0.184211 0.210526 0.605263 0.000000 0.210526 0.052632 0.657895 0.078947 0.000000 0.000000 1.000000 0.000000 0.605263 0.000000 0.394737 0.000000 0.394737 0.157895 0.210526 0.236842 0.000000 0.000000 0.000000 1.000000 0.000000 0.736842 0.000000 0.263158 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.078947 0.684211 0.052632 0.184211 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAWAYGCCCMNDSBGGGRDTCGAACC MEME-1 regular expression -------------------------------------------------------------------------------- AAAAAA[AT][AT][CT][GT]C[CGT][CA][CA][ACG][GAT][CGA][CGT][GC][GA]G[AG][ATG]T[CT]GAACC -------------------------------------------------------------------------------- Time 355.46 secs. ******************************************************************************** ******************************************************************************** MOTIF STTGGCCBAGTBGKTWAAGSS MEME-2 width = 21 sites = 27 llr = 510 E-value = 1.2e-069 ******************************************************************************** -------------------------------------------------------------------------------- Motif STTGGCCBAGTBGKTWAAGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:2:::1a1:::::4761:: pos.-specific C 6::::983:::3::1::1:45 probability G 33:8a:13:9:3a7::22965 matrix T 16a::112::a4:39611::: bits 2.4 * * 2.2 * * 1.9 * * * * 1.7 **** ** * * Relative 1.4 ***** *** * *** Entropy 1.2 ***** *** ** *** (27.2 bits) 1.0 * ***** *** *** *** 0.7 * ***** *** ***** *** 0.5 ******* ********* *** 0.2 ********************* 0.0 --------------------- Multilevel CTTGGCCCAGTTGGTTAAGGC consensus GG G G T AG CG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTGGCCBAGTBGKTWAAGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrV:550914-551826 - 13 4.04e-13 TTACAGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:734652-734921 + 71 4.04e-13 AGTTTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTA chrVII:738760-739519 + 38 4.04e-13 AAATAGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrII:197227-197818 + 27 4.04e-13 ATCAAGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrX:523745-523845 - 28 7.39e-11 TTAAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXIII:259021-259428 - 40 7.39e-11 AGTATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:437552-438025 + 39 7.39e-11 AGTAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:167719-168228 - 77 7.39e-11 CAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrX:617704-617804 + 63 1.24e-10 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXI:74434-74801 + 62 1.81e-10 AATTAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXVI:810603-810833 + 13 1.81e-10 TTTGCGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrX:424330-424430 - 16 2.03e-10 AAGATGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXI:84025-84410 + 46 2.03e-10 TGTATGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXIII:586384-587069 - 8 1.66e-09 ACTATGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCT chrXI:379474-379919 + 39 1.66e-09 TAATAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:307905-308509 - 35 1.66e-09 TAAGTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378127-378227 + 75 1.66e-09 TAATAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTG chrXVI:689346-689866 + 14 3.62e-09 TTTTGGGCAC TATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrIV:359397-359767 + 50 5.78e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrVII:115273-115737 + 38 5.78e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXIII:504677-505202 + 11 8.97e-09 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:774173-774558 + 39 1.54e-08 TAATTGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrIII:151137-151591 - 17 1.85e-08 AAAGAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIX:299998-300586 - 33 1.85e-08 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXIV:374742-375098 + 4 2.22e-08 GGA CTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIII:837740-838149 + 39 4.56e-08 ATTGACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrX:542785-542885 - 53 4.56e-08 AAATACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTGGCCBAGTBGKTWAAGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:550914-551826 4e-13 12_[-2]_67 chrXII:734652-734921 4e-13 70_[+2]_9 chrVII:738760-739519 4e-13 37_[+2]_42 chrII:197227-197818 4e-13 26_[+2]_53 chrX:523745-523845 7.4e-11 27_[-2]_52 chrXIII:259021-259428 7.4e-11 39_[-2]_40 chrIV:437552-438025 7.4e-11 38_[+2]_41 chrXII:167719-168228 7.4e-11 76_[-2]_3 chrX:617704-617804 1.2e-10 62_[+2]_17 chrXI:74434-74801 1.8e-10 61_[+2]_18 chrXVI:810603-810833 1.8e-10 12_[+2]_67 chrX:424330-424430 2e-10 15_[-2]_64 chrXI:84025-84410 2e-10 45_[+2]_34 chrXIII:586384-587069 1.7e-09 7_[-2]_72 chrXI:379474-379919 1.7e-09 38_[+2]_41 chrXI:307905-308509 1.7e-09 34_[-2]_45 chrX:378127-378227 1.7e-09 74_[+2]_5 chrXVI:689346-689866 3.6e-09 13_[+2]_66 chrIV:359397-359767 5.8e-09 49_[+2]_30 chrVII:115273-115737 5.8e-09 37_[+2]_42 chrXIII:504677-505202 9e-09 10_[+2]_69 chrVII:774173-774558 1.5e-08 38_[+2]_41 chrIII:151137-151591 1.9e-08 16_[-2]_63 chrIX:299998-300586 1.9e-08 32_[-2]_47 chrXIV:374742-375098 2.2e-08 3_[+2]_76 chrXIII:837740-838149 4.6e-08 38_[+2]_41 chrX:542785-542885 4.6e-08 52_[-2]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTGGCCBAGTBGKTWAAGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STTGGCCBAGTBGKTWAAGSS width=21 seqs=27 chrV:550914-551826 ( 13) CTTGGCCCAGTTGGTTAAGGC 1 chrXII:734652-734921 ( 71) CTTGGCCCAGTTGGTTAAGGC 1 chrVII:738760-739519 ( 38) CTTGGCCCAGTTGGTTAAGGC 1 chrII:197227-197818 ( 27) CTTGGCCCAGTTGGTTAAGGC 1 chrX:523745-523845 ( 28) CTTGGCCGAGTGGTTAAGGCG 1 chrXIII:259021-259428 ( 40) CTTGGCCGAGTGGTTAAGGCG 1 chrIV:437552-438025 ( 39) CTTGGCCGAGTGGTTAAGGCG 1 chrXII:167719-168228 ( 77) CTTGGCCGAGTGGTTAAGGCG 1 chrX:617704-617804 ( 63) TTTGGCCGAGTGGTTTAAGGC 1 chrXI:74434-74801 ( 62) CATGGCCAAGTTGGTTAAGGC 1 chrXVI:810603-810833 ( 13) CATGGCCAAGTTGGTTAAGGC 1 chrX:424330-424430 ( 16) GTTGGCCGAGTGGTCTAAGGC 1 chrXI:84025-84410 ( 46) GTTGGCCGAGTGGTCTAAGGC 1 chrXIII:586384-587069 ( 8) CGTGGTCTAGTCGGTTATGGC 1 chrXI:379474-379919 ( 39) CGTGGTCTAGTCGGTTATGGC 1 chrXI:307905-308509 ( 35) CGTGGTCTAGTCGGTTATGGC 1 chrX:378127-378227 ( 75) CGTGGTCTAGTCGGTTATGGC 1 chrXVI:689346-689866 ( 14) TATGGCCGAGTGGTTAAGGCG 1 chrIV:359397-359767 ( 50) GTTAGCTCAGTTGGTAGAGCG 1 chrVII:115273-115737 ( 38) GTTAGCTCAGTTGGTAGAGCG 1 chrXIII:504677-505202 ( 11) TTTGGCCGAGCGGTCTAAGGC 1 chrVII:774173-774558 ( 39) TGTGGCGTAGTCGGTAGCGCG 1 chrIII:151137-151591 ( 17) GTTGGCGCAATCGGTAGCGCG 1 chrIX:299998-300586 ( 33) GTTGGCGCAATCGGTAGCGCG 1 chrXIV:374742-375098 ( 4) CTTAGCTCAGTTGGGAGAGCG 1 chrXIII:837740-838149 ( 39) GGTAGCCAAGTTGGTTTAAGG 1 chrX:542785-542885 ( 53) GGTAGCCAAGTTGGTTTAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTGGCCBAGTBGKTWAAGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.5956 E= 1.2e-069 -1140 155 64 -106 -148 -1140 45 102 -1140 -1140 -1140 169 -74 -1140 210 -1140 -1140 -1140 239 -1140 -1140 216 -1140 -106 -1140 203 -78 -148 -106 81 81 -74 169 -1140 -1140 -1140 -206 -1140 228 -1140 -1140 -236 -1140 164 -1140 45 81 40 -1140 -1140 239 -1140 -1140 -1140 181 11 -1140 -78 -236 146 40 -1140 -1140 94 118 -1140 22 -206 84 -78 -4 -106 -206 -1140 228 -1140 -1140 110 164 -1140 -1140 145 134 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTGGCCBAGTBGKTWAAGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 27 E= 1.2e-069 0.000000 0.555556 0.296296 0.148148 0.111111 0.000000 0.259259 0.629630 0.000000 0.000000 0.000000 1.000000 0.185185 0.000000 0.814815 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.851852 0.000000 0.148148 0.000000 0.777778 0.111111 0.111111 0.148148 0.333333 0.333333 0.185185 1.000000 0.000000 0.000000 0.000000 0.074074 0.000000 0.925926 0.000000 0.000000 0.037037 0.000000 0.962963 0.000000 0.259259 0.333333 0.407407 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.111111 0.037037 0.851852 0.407407 0.000000 0.000000 0.592593 0.703704 0.000000 0.222222 0.074074 0.555556 0.111111 0.185185 0.148148 0.074074 0.000000 0.925926 0.000000 0.000000 0.407407 0.592593 0.000000 0.000000 0.518519 0.481481 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTGGCCBAGTBGKTWAAGSS MEME-2 regular expression -------------------------------------------------------------------------------- [CG][TG]TGGCC[CG]AGT[TGC]G[GT]T[TA][AG]AG[GC][CG] -------------------------------------------------------------------------------- Time 685.76 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCCATTCTGACCATTAAACTATCACGG MEME-3 width = 30 sites = 7 llr = 297 E-value = 6.6e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCCATTCTGACCATTAAACTATCACGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::a:::::a::a::aaa::a::a::: pos.-specific C :a:aaa:::a:::aa::::::a:::a:a:: probability G a:a::::::::a::::::::::::::::aa matrix T :::::::aa:a:::::aa::::a:a::::: bits 2.4 ****** * * ** * * *** 2.2 ****** * * ** * * *** 1.9 ****** * * ** * * *** 1.7 ****************************** Relative 1.4 ****************************** Entropy 1.2 ****************************** (61.3 bits) 1.0 ****************************** 0.7 ****************************** 0.5 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel GCGCCCATTCTGACCATTAAACTATCACGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCATTCTGACCATTAAACTATCACGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrX:355217-355317 - 30 3.56e-19 CACGCGACAA GCGCCCATTCTGACCATTAAACTATCACGG AAGAAACAAA chrVII:531415-531769 - 69 3.56e-19 AA GCGCCCATTCTGACCATTAAACTATCACGG AAGTAACTCG chrIX:324209-324534 + 23 3.56e-19 CACGCGACAA GCGCCCATTCTGACCATTAAACTATCACGG AATATTAGAT chrVII:544401-544923 + 6 3.56e-19 GACAA GCGCCCATTCTGACCATTAAACTATCACGG AAGAAATATC chrXI:513291-513491 + 32 3.56e-19 CACGCGACAA GCGCCCATTCTGACCATTAAACTATCACGG AACGTTATTT chrX:204487-204587 - 22 3.56e-19 CACGCGACAA GCGCCCATTCTGACCATTAAACTATCACGG ATTTTTATGT chrIX:336116-336651 + 57 3.56e-19 CACGCGACAA GCGCCCATTCTGACCATTAAACTATCACGG ATTTGTTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCATTCTGACCATTAAACTATCACGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:355217-355317 3.6e-19 29_[-3]_41 chrVII:531415-531769 3.6e-19 68_[-3]_2 chrIX:324209-324534 3.6e-19 22_[+3]_48 chrVII:544401-544923 3.6e-19 5_[+3]_65 chrXI:513291-513491 3.6e-19 31_[+3]_39 chrX:204487-204587 3.6e-19 21_[-3]_49 chrIX:336116-336651 3.6e-19 56_[+3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCATTCTGACCATTAAACTATCACGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCCATTCTGACCATTAAACTATCACGG width=30 seqs=7 chrX:355217-355317 ( 30) GCGCCCATTCTGACCATTAAACTATCACGG 1 chrVII:531415-531769 ( 69) GCGCCCATTCTGACCATTAAACTATCACGG 1 chrIX:324209-324534 ( 23) GCGCCCATTCTGACCATTAAACTATCACGG 1 chrVII:544401-544923 ( 6) GCGCCCATTCTGACCATTAAACTATCACGG 1 chrXI:513291-513491 ( 32) GCGCCCATTCTGACCATTAAACTATCACGG 1 chrX:204487-204587 ( 22) GCGCCCATTCTGACCATTAAACTATCACGG 1 chrIX:336116-336651 ( 57) GCGCCCATTCTGACCATTAAACTATCACGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCATTCTGACCATTAAACTATCACGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 12.4148 E= 6.6e-046 -945 -945 239 -945 -945 239 -945 -945 -945 -945 239 -945 -945 239 -945 -945 -945 239 -945 -945 -945 239 -945 -945 169 -945 -945 -945 -945 -945 -945 169 -945 -945 -945 169 -945 239 -945 -945 -945 -945 -945 169 -945 -945 239 -945 169 -945 -945 -945 -945 239 -945 -945 -945 239 -945 -945 169 -945 -945 -945 -945 -945 -945 169 -945 -945 -945 169 169 -945 -945 -945 169 -945 -945 -945 169 -945 -945 -945 -945 239 -945 -945 -945 -945 -945 169 169 -945 -945 -945 -945 -945 -945 169 -945 239 -945 -945 169 -945 -945 -945 -945 239 -945 -945 -945 -945 239 -945 -945 -945 239 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCATTCTGACCATTAAACTATCACGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 7 E= 6.6e-046 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCATTCTGACCATTAAACTATCACGG MEME-3 regular expression -------------------------------------------------------------------------------- GCGCCCATTCTGACCATTAAACTATCACGG -------------------------------------------------------------------------------- Time 1011.89 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:301074-301621 8.04e-01 100 chrVIII:372693-374111 8.96e-01 100 chrXV:159231-160747 3.11e-01 100 chrVII:254225-254770 5.41e-01 100 chrXI:426209-427146 6.45e-01 100 chrI:76852-77217 9.86e-01 100 chrIV:1278407-1279075 7.22e-01 100 chrXVI:821616-822231 9.28e-01 100 chrXIII:752605-754289 3.96e-01 100 chrVII:559270-560086 2.63e-01 100 chrVII:437080-438440 8.46e-01 100 chrXI:558351-559452 5.34e-01 100 chrIV:578941-580839 3.88e-02 100 chrIII:57346-58900 4.20e-01 100 chrXVI:377825-378460 8.19e-01 100 chrIV:992703-993233 6.78e-01 100 chrXII:107821-108979 1.18e-01 100 chrIX:257501-258148 2.83e-01 100 chrXIV:585479-586623 6.14e-01 100 chrIV:884302-886426 2.06e-01 100 chrXII:605175-605630 3.97e-03 54_[-2(1.30e-06)]_25 chrIX:248697-249433 5.94e-01 100 chrII:193277-193885 8.35e-01 100 chrXI:645411-645872 3.97e-01 100 chrXVI:208127-210965 4.14e-01 100 chrI:151311-151915 3.53e-01 100 chrXV:854064-854830 2.46e-01 100 chrXII:260952-264378 2.62e-01 100 chrVII:876129-878011 9.38e-01 100 chrXV:925255-925429 4.19e-01 100 chrXIII:290597-291164 7.62e-08 20_[-1(4.59e-12)]_50 chrV:77561-79959 1.08e-02 8_[+2(4.34e-06)]_71 chrXVI:577114-581168 9.32e-01 100 chrII:347444-347931 3.84e-03 27_[-1(6.21e-06)]_43 chrI:203259-203498 4.86e-01 100 chrXV:805048-806716 6.48e-01 100 chrIV:667758-668554 2.12e-01 100 chrXIII:861122-861542 2.73e-01 100 chrVII:95697-97292 4.41e-01 100 chrXII:867216-868895 3.73e-01 100 chrVIII:281658-282694 4.64e-01 100 chrX:617704-617804 5.33e-07 62_[+2(1.24e-10)]_17 chrVII:319167-320136 2.46e-01 100 chrVIII:400951-401414 7.38e-01 100 chrXII:1017519-1019007 2.94e-01 100 chrXIII:408122-409083 1.53e-01 100 chrXIV:301495-302288 4.62e-01 100 chrXIV:739322-739650 7.48e-01 100 chrVII:405493-405811 7.16e-01 100 chrXVI:769697-769871 1.83e-01 100 chrXIII:221938-223902 9.97e-01 100 chrIV:1344835-1345756 8.59e-01 100 chrXV:742733-744555 1.64e-01 100 chrXIII:372190-372634 1.13e-01 26_[+3(6.71e-05)]_44 chrVII:881902-884118 3.05e-01 100 chrXII:97181-97890 8.91e-01 100 chrX:422745-422845 1.05e-06 [-1(8.73e-11)]_70 chrVI:191319-191729 6.05e-07 30_[+1(8.73e-11)]_40 chrXVI:297010-298723 4.90e-03 50_[+2(3.05e-05)]_29 chrVI:63872-65322 7.34e-02 100 chrXI:431855-433055 1.00e-01 75_[+2(9.68e-05)]_4 chrXII:951041-954753 5.21e-01 100 chrXII:228896-229690 2.21e-01 100 chrXI:112738-114615 9.24e-01 100 chrV:117134-118258 5.07e-01 100 chrIV:720554-721618 6.61e-01 100 chrVII:149202-149449 9.91e-01 100 chrXIII:510925-512053 2.02e-01 100 chrXIV:107908-109161 8.79e-01 100 chrXIII:220091-221108 3.18e-01 100 chrXII:673475-675090 9.19e-01 100 chrVII:1004069-1004402 2.46e-01 100 chrXI:231043-231620 1.45e-01 100 chrXII:80459-81136 4.82e-01 100 chrXIII:115518-118988 5.76e-01 100 chrII:579213-581419 5.46e-01 100 chrV:138500-140817 5.52e-01 100 chrXII:546107-547572 6.94e-01 100 chrIV:893744-894685 1.37e-01 100 chrXII:264750-265290 6.05e-01 100 chrVII:147930-149029 7.39e-01 100 chrXVI:451555-453351 9.33e-01 100 chrV:486991-487605 7.15e-01 100 chrXIV:717793-718320 5.22e-01 100 chrVII:779379-779681 7.21e-01 100 chrXII:510263-510565 2.71e-02 78_[-2(7.96e-05)]_1 chrXVI:376800-377375 7.08e-01 100 chrXII:1028800-1030552 8.50e-01 100 chrXV:1003438-1006727 9.93e-01 100 chrVII:1055447-1056451 7.60e-01 100 chrVI:183215-183897 6.56e-01 100 chrXI:84025-84410 1.46e-06 45_[+2(2.03e-10)]_34 chrXVI:74749-76306 8.85e-01 100 chrVII:772733-772899 1.52e-01 100 chrXV:251311-253657 5.75e-01 100 chrVII:661509-661881 7.75e-01 100 chrXVI:282045-283385 9.49e-01 100 chrXII:665129-665501 7.24e-01 100 chrXVI:810603-810833 6.49e-13 12_[+2(1.81e-10)]_26_[-1(5.80e-10)]_\ 11 chrI:24972-25467 9.69e-01 100 chrV:354807-355381 7.32e-02 63_[-1(4.99e-05)]_7 chrXII:167719-168228 1.54e-13 12_[+1(1.93e-10)]_34_[-2(7.39e-11)]_\ 3 chrXVI:622306-622827 1.47e-06 15_[+1(5.66e-09)]_5_[-2(8.57e-05)]_\ 29 chrXIII:146445-147896 3.54e-01 100 chrXII:426922-427462 1.78e-08 39_[-1(7.10e-13)]_31 chrII:444717-445098 3.06e-01 100 chrVII:1048191-1050070 1.60e-01 100 chrXVI:878859-880544 6.04e-01 100 chrXIII:159201-160207 2.92e-01 100 chrXV:200415-201840 9.37e-02 100 chrXIII:251876-252993 6.95e-01 100 chrIV:1245670-1246178 8.16e-01 100 chrV:311746-312276 2.42e-01 100 chrVI:52913-55691 3.94e-01 100 chrIX:138581-139160 9.70e-01 100 chrXVI:901237-902252 9.54e-02 100 chrXV:622545-623359 1.63e-01 100 chrIII:179066-179325 6.61e-01 100 chrIV:1233434-1234300 8.58e-01 100 chrXV:472825-473672 6.42e-02 100 chrVII:648020-648501 7.50e-01 100 chrXIII:671262-674760 2.77e-01 100 chrVIII:115484-116283 8.07e-01 100 chrIV:281670-282538 1.51e-01 100 chrV:101825-102752 3.07e-01 100 chrII:413769-415298 7.37e-01 100 chrXVI:25089-25884 2.01e-01 100 chrXIII:768180-768403 5.47e-01 100 chrII:227018-227358 8.95e-01 100 chrX:453304-453404 5.65e-01 100 chrVII:541741-542146 3.09e-07 6_[-1(4.19e-11)]_64 chrX:378127-378227 7.05e-06 74_[+2(1.66e-09)]_5 chrXII:695648-696714 9.77e-01 100 chrII:100903-101561 6.83e-01 100 chrIV:229804-231040 7.76e-01 100 chrXIII:696274-697974 4.71e-01 100 chrXIV:442881-444320 5.30e-01 100 chrII:680359-682330 1.43e-01 100 chrIV:519681-520190 9.39e-01 100 chrXI:457412-459422 8.53e-01 100 chrXI:307905-308509 1.38e-05 34_[-2(1.66e-09)]_45 chrIX:336116-336651 5.09e-26 7_[+1(4.61e-13)]_19_[+3(3.56e-19)]_\ 14 chrXI:551574-552711 6.46e-01 100 chrXV:779765-781009 2.04e-01 100 chrX:354196-354296 9.90e-01 100 chrXIII:669272-670098 7.50e-01 100 chrII:332477-334200 8.88e-01 100 chrIV:541215-542405 4.47e-01 100 chrXI:21257-21741 6.30e-01 100 chrVII:865606-867288 7.77e-01 100 chrXIV:54051-55929 9.37e-01 100 chrVII:805176-807803 7.09e-02 100 chrXIII:551459-551705 8.92e-01 100 chrXIII:90895-92115 9.43e-01 100 chrVIII:74901-76289 1.86e-02 100 chrIX:316145-316481 6.34e-01 100 chrIV:655683-657480 9.87e-01 100 chrII:254628-255798 9.75e-02 100 chrXVI:370970-373251 2.47e-01 100 chrXII:459657-460259 7.49e-01 100 chrII:197227-197818 1.07e-09 26_[+2(4.04e-13)]_53 chrXIII:306167-307201 8.14e-02 100 chrV:282136-284289 9.86e-01 100 chrII:563227-564579 7.63e-01 100 chrXIII:37282-37968 8.21e-02 100 chrXII:367997-372454 7.75e-01 100 chrIV:437552-438025 1.31e-06 38_[+2(7.39e-11)]_41 chrVII:938971-939677 9.93e-01 100 chrX:390842-390942 4.13e-08 7_[+1(1.07e-10)]_63 chrXV:128526-128831 6.46e-01 100 chrX:58650-58750 8.37e-01 100 chrXV:226477-226868 1.34e-01 100 chrXI:302676-303280 1.01e-01 100 chrXIV:102605-103217 3.33e-01 100 chrVII:914587-915302 9.56e-01 100 chrXIV:546515-547469 5.99e-01 100 chrX:204487-204587 5.09e-26 21_[-3(3.56e-19)]_19_[-1(4.61e-13)] chrXIV:416429-417305 4.11e-01 100 chrX:157580-157680 8.99e-01 100 chrV:235058-237186 1.20e-01 100 chrXII:903481-903681 5.32e-01 100 chrXVI:829030-829342 2.44e-02 29_[-1(1.03e-05)]_41 chrIX:427353-427794 7.69e-01 100 chrVII:919783-920036 9.14e-01 100 chrIV:83342-83834 1.64e-08 5_[+2(2.88e-05)]_32_[-1(3.39e-10)]_\ 12 chrII:477167-477791 6.25e-02 100 chrX:646829-646929 8.72e-02 100 chrXV:109711-111269 5.50e-01 100 chrX:136014-136114 6.47e-02 57_[+3(4.84e-05)]_13 chrXII:568078-570858 1.68e-01 100 chrXII:439551-441872 2.25e-01 100 chrVII:649594-650726 9.06e-01 100 chrXII:784127-784509 1.59e-01 100 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chrXIV:721142-723233 7.32e-01 100 chrIV:525432-526029 6.62e-01 100 chrX:374182-374282 1.71e-06 10_[+1(1.93e-10)]_60 chrXIII:431902-432383 9.24e-01 100 chrVII:328409-329257 6.67e-01 100 chrXII:498767-500273 9.47e-01 100 chrVI:224293-225797 1.46e-01 100 chrIV:1494486-1495908 3.70e-01 100 chrVIII:491973-493681 6.36e-01 100 chrIV:43993-44557 2.47e-01 100 chrIV:359397-359767 1.59e-06 49_[+2(5.78e-09)]_30 chrXVI:66977-67521 1.37e-01 100 chrIX:388730-390968 2.78e-01 100 chrVII:824438-827326 4.75e-01 100 chrXII:198240-199725 8.29e-01 100 chrXII:514847-515146 3.79e-01 100 chrVII:845307-845965 1.44e-01 100 chrVIII:175051-175768 7.18e-01 100 chrVII:592124-592752 5.88e-01 100 chrXVI:246421-246690 8.62e-01 100 chrXII:166705-167459 9.80e-01 100 chrXIII:300804-302517 4.66e-01 100 chrXIII:225864-226975 9.47e-01 100 chrIX:395856-397117 1.18e-01 100 chrXV:505694-507135 3.83e-03 12_[-1(6.01e-06)]_58 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************