******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--PDR3/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:32858-33224 1.0000 100 chrI:71750-73607 1.0000 100 chrI:81908-82267 1.0000 100 chrI:138962-139344 1.0000 100 chrI:142166-143490 1.0000 100 chrI:166179-166566 1.0000 100 chrII:9466-9869 1.0000 100 chrII:23742-24584 1.0000 100 chrII:36234-36557 1.0000 100 chrII:44948-45322 1.0000 100 chrII:59816-61178 1.0000 100 chrII:88939-90161 1.0000 100 chrII:165132-165422 1.0000 100 chrII:167923-168187 1.0000 100 chrII:181314-181609 1.0000 100 chrII:197292-197835 1.0000 100 chrII:215927-218251 1.0000 100 chrII:226973-227366 1.0000 100 chrII:255093-255681 1.0000 100 chrII:266214-266707 1.0000 100 chrII:326474-327162 1.0000 100 chrII:332139-332933 1.0000 100 chrII:347428-347950 1.0000 100 chrII:350588-351043 1.0000 100 chrII:405682-406336 1.0000 100 chrII:415529-416139 1.0000 100 chrII:477102-477767 1.0000 100 chrII:592918-593273 1.0000 100 chrII:604137-606065 1.0000 100 chrII:644957-645413 1.0000 100 chrIII:79-1257 1.0000 100 chrIII:90788-91110 1.0000 100 chrIII:123386-123794 1.0000 100 chrIII:127528-127881 1.0000 100 chrIII:133438-133997 1.0000 100 chrIII:137769-138978 1.0000 100 chrIII:142666-142973 1.0000 100 chrIII:149740-150170 1.0000 100 chrIII:151153-151567 1.0000 100 chrIII:163499-163848 1.0000 100 chrIII:168089-168556 1.0000 100 chrIII:177176-178160 1.0000 100 chrIII:178368-178785 1.0000 100 chrIII:227774-228224 1.0000 100 chrIII:295353-295885 1.0000 100 chrIII:308570-308950 1.0000 100 chrIV:45237-45911 1.0000 100 chrIV:83355-83792 1.0000 100 chrIV:117174-118228 1.0000 100 chrIV:125293-126275 1.0000 100 chrIV:129940-130949 1.0000 100 chrIV:217159-218067 1.0000 100 chrIV:221389-222336 1.0000 100 chrIV:229545-230501 1.0000 100 chrIV:308031-308619 1.0000 100 chrIV:321699-321945 1.0000 100 chrIV:340970-341736 1.0000 100 chrIV:355678-356872 1.0000 100 chrIV:358049-358495 1.0000 100 chrIV:359330-359764 1.0000 100 chrIV:410234-410447 1.0000 100 chrIV:411278-411621 1.0000 100 chrIV:416963-417485 1.0000 100 chrIV:434105-435058 1.0000 100 chrIV:437553-438068 1.0000 100 chrIV:464230-469155 1.0000 100 chrIV:488426-488985 1.0000 100 chrIV:490997-491285 1.0000 100 chrIV:519655-519898 1.0000 100 chrIV:520721-521162 1.0000 100 chrIV:539011-539430 1.0000 100 chrIV:541237-541901 1.0000 100 chrIV:555772-556459 1.0000 100 chrIV:568529-569611 1.0000 100 chrIV:578877-580792 1.0000 100 chrIV:591637-591971 1.0000 100 chrIV:601187-602276 1.0000 100 chrIV:619699-620219 1.0000 100 chrIV:667707-668572 1.0000 100 chrIV:802600-802838 1.0000 100 chrIV:808360-810178 1.0000 100 chrIV:884292-886532 1.0000 100 chrIV:945805-946628 1.0000 100 chrIV:992693-993398 1.0000 100 chrIV:1016960-1017516 1.0000 100 chrIV:1075326-1075753 1.0000 100 chrIV:1094992-1095680 1.0000 100 chrIV:1150445-1151162 1.0000 100 chrIV:1164841-1165187 1.0000 100 chrIV:1175601-1176040 1.0000 100 chrIV:1201544-1201965 1.0000 100 chrIV:1236491-1238010 1.0000 100 chrIV:1277730-1279926 1.0000 100 chrIV:1300805-1301314 1.0000 100 chrIV:1305405-1305786 1.0000 100 chrIV:1351918-1352211 1.0000 100 chrIV:1352386-1353049 1.0000 100 chrIV:1355740-1355992 1.0000 100 chrIV:1359434-1361013 1.0000 100 chrIV:1400909-1401113 1.0000 100 chrIV:1401289-1401930 1.0000 100 chrIV:1450634-1451614 1.0000 100 chrIV:1461369-1461848 1.0000 100 chrIV:1490127-1490403 1.0000 100 chrIX:68072-69551 1.0000 100 chrIX:99671-100015 1.0000 100 chrIX:174896-175203 1.0000 100 chrIX:183283-183676 1.0000 100 chrIX:197319-198150 1.0000 100 chrIX:210658-211338 1.0000 100 chrIX:248619-249463 1.0000 100 chrIX:254252-254537 1.0000 100 chrIX:257381-257980 1.0000 100 chrIX:300008-300492 1.0000 100 chrIX:316042-316563 1.0000 100 chrIX:324199-324548 1.0000 100 chrIX:325532-326074 1.0000 100 chrIX:336091-336685 1.0000 100 chrIX:370255-370571 1.0000 100 chrIX:390110-390884 1.0000 100 chrV:6212-6370 1.0000 100 chrV:51801-53189 1.0000 100 chrV:53543-54242 1.0000 100 chrV:61081-62120 1.0000 100 chrV:69113-69332 1.0000 100 chrV:78075-79441 1.0000 100 chrV:85153-86783 1.0000 100 chrV:99925-100276 1.0000 100 chrV:117593-118295 1.0000 100 chrV:130832-131364 1.0000 100 chrV:135227-136054 1.0000 100 chrV:138479-139972 1.0000 100 chrV:140148-140887 1.0000 100 chrV:141094-141320 1.0000 100 chrV:176803-177440 1.0000 100 chrV:249797-250703 1.0000 100 chrV:270409-270632 1.0000 100 chrV:288197-289057 1.0000 100 chrV:298865-301579 1.0000 100 chrV:305819-307433 1.0000 100 chrV:311740-312291 1.0000 100 chrV:354799-355335 1.0000 100 chrV:396050-396540 1.0000 100 chrV:423085-423485 1.0000 100 chrV:431035-432064 1.0000 100 chrV:434400-435114 1.0000 100 chrV:435333-435931 1.0000 100 chrV:438516-439003 1.0000 100 chrV:441809-442653 1.0000 100 chrV:443116-443340 1.0000 100 chrV:469108-470277 1.0000 100 chrV:486991-487665 1.0000 100 chrV:492245-492421 1.0000 100 chrV:551019-551574 1.0000 100 chrVI:4567-4766 1.0000 100 chrVI:64197-65353 1.0000 100 chrVI:95483-95827 1.0000 100 chrVI:101376-101756 1.0000 100 chrVI:137242-137772 1.0000 100 chrVI:157899-158223 1.0000 100 chrVI:162024-162373 1.0000 100 chrVI:167246-167691 1.0000 100 chrVI:180690-181262 1.0000 100 chrVI:191280-191756 1.0000 100 chrVI:210445-210869 1.0000 100 chrVI:221770-222054 1.0000 100 chrVI:223268-224139 1.0000 100 chrVI:226500-226965 1.0000 100 chrVII:95386-97386 1.0000 100 chrVII:110309-110782 1.0000 100 chrVII:115263-115736 1.0000 100 chrVII:121999-122855 1.0000 100 chrVII:148185-149481 1.0000 100 chrVII:185186-185890 1.0000 100 chrVII:205132-205791 1.0000 100 chrVII:254172-254744 1.0000 100 chrVII:277036-278364 1.0000 100 chrVII:278527-278696 1.0000 100 chrVII:287140-287706 1.0000 100 chrVII:310381-312597 1.0000 100 chrVII:319232-320124 1.0000 100 chrVII:328371-329902 1.0000 100 chrVII:364892-366646 1.0000 100 chrVII:371248-371486 1.0000 100 chrVII:401414-401612 1.0000 100 chrVII:405464-405853 1.0000 100 chrVII:411904-412592 1.0000 100 chrVII:422892-423341 1.0000 100 chrVII:437475-437919 1.0000 100 chrVII:438596-438859 1.0000 100 chrVII:439030-439893 1.0000 100 chrVII:440635-440926 1.0000 100 chrVII:479572-482727 1.0000 100 chrVII:483419-483756 1.0000 100 chrVII:531252-531770 1.0000 100 chrVII:533221-535193 1.0000 100 chrVII:541717-542163 1.0000 100 chrVII:544417-544846 1.0000 100 chrVII:554683-558397 1.0000 100 chrVII:561261-561717 1.0000 100 chrVII:647849-648492 1.0000 100 chrVII:648788-649337 1.0000 100 chrVII:661537-661934 1.0000 100 chrVII:700205-701152 1.0000 100 chrVII:706945-707197 1.0000 100 chrVII:726378-726731 1.0000 100 chrVII:730958-731369 1.0000 100 chrVII:736199-736519 1.0000 100 chrVII:738923-739478 1.0000 100 chrVII:774155-774695 1.0000 100 chrVII:779281-779699 1.0000 100 chrVII:788352-788704 1.0000 100 chrVII:794091-794506 1.0000 100 chrVII:806584-807783 1.0000 100 chrVII:823347-823689 1.0000 100 chrVII:828360-828985 1.0000 100 chrVII:845459-846183 1.0000 100 chrVII:857124-857590 1.0000 100 chrVII:876161-876535 1.0000 100 chrVII:876707-878008 1.0000 100 chrVII:878424-879073 1.0000 100 chrVII:882773-883884 1.0000 100 chrVII:930554-931154 1.0000 100 chrVII:1004042-1004403 1.0000 100 chrVIII:35279-36113 1.0000 100 chrVIII:62615-62917 1.0000 100 chrVIII:74983-75930 1.0000 100 chrVIII:103568-105489 1.0000 100 chrVIII:115709-116292 1.0000 100 chrVIII:125916-126277 1.0000 100 chrVIII:126497-127500 1.0000 100 chrVIII:132517-133339 1.0000 100 chrVIII:134081-134763 1.0000 100 chrVIII:144805-146755 1.0000 100 chrVIII:149012-149228 1.0000 100 chrVIII:175027-175398 1.0000 100 chrVIII:237754-238081 1.0000 100 chrVIII:296914-297201 1.0000 100 chrVIII:358333-358776 1.0000 100 chrVIII:381551-383334 1.0000 100 chrVIII:388728-389183 1.0000 100 chrVIII:451316-453075 1.0000 100 chrVIII:466905-467202 1.0000 100 chrVIII:467499-467708 1.0000 100 chrVIII:475501-475905 1.0000 100 chrVIII:505833-506197 1.0000 100 chrVIII:556951-557155 1.0000 100 chrX:59015-59414 1.0000 100 chrX:73390-75684 1.0000 100 chrX:75906-76488 1.0000 100 chrX:90017-90407 1.0000 100 chrX:115849-116204 1.0000 100 chrX:138822-140194 1.0000 100 chrX:157492-157841 1.0000 100 chrX:196765-197515 1.0000 100 chrX:204528-205048 1.0000 100 chrX:213953-215361 1.0000 100 chrX:227744-228565 1.0000 100 chrX:233715-234096 1.0000 100 chrX:354170-354522 1.0000 100 chrX:355212-355908 1.0000 100 chrX:374236-374821 1.0000 100 chrX:378138-378552 1.0000 100 chrX:390937-391303 1.0000 100 chrX:391841-392081 1.0000 100 chrX:396428-396937 1.0000 100 chrX:414779-415254 1.0000 100 chrX:415540-416509 1.0000 100 chrX:422668-423336 1.0000 100 chrX:424303-424723 1.0000 100 chrX:517694-518102 1.0000 100 chrX:523919-524454 1.0000 100 chrX:531025-532386 1.0000 100 chrX:538525-538736 1.0000 100 chrX:540690-541782 1.0000 100 chrX:542795-543260 1.0000 100 chrX:607242-608110 1.0000 100 chrX:608327-609032 1.0000 100 chrX:617688-618127 1.0000 100 chrX:651278-651586 1.0000 100 chrX:651898-653140 1.0000 100 chrX:703279-703655 1.0000 100 chrX:745099-745499 1.0000 100 chrXI:775-1099 1.0000 100 chrXI:46368-47001 1.0000 100 chrXI:67798-68058 1.0000 100 chrXI:74433-74786 1.0000 100 chrXI:84022-84421 1.0000 100 chrXI:107517-109045 1.0000 100 chrXI:140777-141478 1.0000 100 chrXI:141713-142787 1.0000 100 chrXI:158170-159318 1.0000 100 chrXI:162438-162680 1.0000 100 chrXI:163309-164451 1.0000 100 chrXI:202314-203067 1.0000 100 chrXI:219579-220116 1.0000 100 chrXI:282811-284315 1.0000 100 chrXI:302682-304071 1.0000 100 chrXI:304360-305136 1.0000 100 chrXI:307918-308455 1.0000 100 chrXI:312348-313599 1.0000 100 chrXI:326406-327469 1.0000 100 chrXI:334157-334908 1.0000 100 chrXI:379327-379894 1.0000 100 chrXI:428852-429109 1.0000 100 chrXI:430790-431631 1.0000 100 chrXI:457617-459311 1.0000 100 chrXI:490767-491204 1.0000 100 chrXI:513222-513514 1.0000 100 chrXI:517785-518063 1.0000 100 chrXI:518899-519191 1.0000 100 chrXI:578765-579612 1.0000 100 chrXI:615826-619286 1.0000 100 chrXI:666598-666796 1.0000 100 chrXII:55-217 1.0000 100 chrXII:47830-49188 1.0000 100 chrXII:84075-84388 1.0000 100 chrXII:92418-92725 1.0000 100 chrXII:95553-95884 1.0000 100 chrXII:167618-168254 1.0000 100 chrXII:201938-202690 1.0000 100 chrXII:214684-215065 1.0000 100 chrXII:232149-234126 1.0000 100 chrXII:241613-241983 1.0000 100 chrXII:242189-243422 1.0000 100 chrXII:282600-283861 1.0000 100 chrXII:340915-341267 1.0000 100 chrXII:366036-366548 1.0000 100 chrXII:368670-370227 1.0000 100 chrXII:370566-370891 1.0000 100 chrXII:374202-374657 1.0000 100 chrXII:424080-424446 1.0000 100 chrXII:426832-427468 1.0000 100 chrXII:448478-448988 1.0000 100 chrXII:459631-460171 1.0000 100 chrXII:460491-460674 1.0000 100 chrXII:498350-500166 1.0000 100 chrXII:522167-522407 1.0000 100 chrXII:522672-523702 1.0000 100 chrXII:592028-592203 1.0000 100 chrXII:592368-592712 1.0000 100 chrXII:605230-605637 1.0000 100 chrXII:627892-628885 1.0000 100 chrXII:636679-639931 1.0000 100 chrXII:656849-657198 1.0000 100 chrXII:673520-674943 1.0000 100 chrXII:713147-713598 1.0000 100 chrXII:732012-732313 1.0000 100 chrXII:734471-734929 1.0000 100 chrXII:780810-781866 1.0000 100 chrXII:783950-784519 1.0000 100 chrXII:793737-793993 1.0000 100 chrXII:796276-797994 1.0000 100 chrXII:805808-806796 1.0000 100 chrXII:818504-818723 1.0000 100 chrXII:818887-819130 1.0000 100 chrXII:822223-823203 1.0000 100 chrXII:837669-839277 1.0000 100 chrXII:855830-857322 1.0000 100 chrXII:857482-857671 1.0000 100 chrXII:875217-875579 1.0000 100 chrXII:897358-899068 1.0000 100 chrXII:922093-922884 1.0000 100 chrXII:932110-932508 1.0000 100 chrXII:962846-963237 1.0000 100 chrXII:975806-976097 1.0000 100 chrXII:1017502-1019418 1.0000 100 chrXII:1028220-1028526 1.0000 100 chrXII:1051993-1052209 1.0000 100 chrXIII:91423-92117 1.0000 100 chrXIII:131655-132073 1.0000 100 chrXIII:145867-146236 1.0000 100 chrXIII:146478-147214 1.0000 100 chrXIII:161783-164282 1.0000 100 chrXIII:168682-168984 1.0000 100 chrXIII:195952-196295 1.0000 100 chrXIII:220064-220938 1.0000 100 chrXIII:222988-223873 1.0000 100 chrXIII:225306-225704 1.0000 100 chrXIII:259034-259495 1.0000 100 chrXIII:290572-291073 1.0000 100 chrXIII:296749-298895 1.0000 100 chrXIII:300871-302434 1.0000 100 chrXIII:302869-303103 1.0000 100 chrXIII:320940-321601 1.0000 100 chrXIII:352083-352639 1.0000 100 chrXIII:362941-363284 1.0000 100 chrXIII:372232-372761 1.0000 100 chrXIII:379041-379621 1.0000 100 chrXIII:420359-420841 1.0000 100 chrXIII:463437-463831 1.0000 100 chrXIII:472848-473239 1.0000 100 chrXIII:480371-480932 1.0000 100 chrXIII:499030-500664 1.0000 100 chrXIII:504635-505159 1.0000 100 chrXIII:549635-550790 1.0000 100 chrXIII:550990-551202 1.0000 100 chrXIII:551407-551776 1.0000 100 chrXIII:551953-553127 1.0000 100 chrXIII:572440-573436 1.0000 100 chrXIII:586410-586890 1.0000 100 chrXIII:626186-626617 1.0000 100 chrXIII:632446-634305 1.0000 100 chrXIII:650543-652905 1.0000 100 chrXIII:653504-653812 1.0000 100 chrXIII:731496-733163 1.0000 100 chrXIII:747782-748752 1.0000 100 chrXIII:753201-754254 1.0000 100 chrXIII:754442-755301 1.0000 100 chrXIII:759052-759423 1.0000 100 chrXIII:768179-768442 1.0000 100 chrXIII:808130-808522 1.0000 100 chrXIII:809686-810699 1.0000 100 chrXIII:810876-811454 1.0000 100 chrXIII:837734-838209 1.0000 100 chrXIII:887023-888738 1.0000 100 chrXIV:61946-62950 1.0000 100 chrXIV:63141-63573 1.0000 100 chrXIV:88972-89682 1.0000 100 chrXIV:96000-96457 1.0000 100 chrXIV:102582-103056 1.0000 100 chrXIV:104593-105054 1.0000 100 chrXIV:217253-217707 1.0000 100 chrXIV:241411-241744 1.0000 100 chrXIV:265265-266336 1.0000 100 chrXIV:302645-303928 1.0000 100 chrXIV:330451-331085 1.0000 100 chrXIV:374650-375096 1.0000 100 chrXIV:442857-444335 1.0000 100 chrXIV:444493-444787 1.0000 100 chrXIV:495212-495587 1.0000 100 chrXIV:499650-500744 1.0000 100 chrXIV:518705-519125 1.0000 100 chrXIV:546550-547362 1.0000 100 chrXIV:560253-560788 1.0000 100 chrXIV:568056-568460 1.0000 100 chrXIV:569504-570045 1.0000 100 chrXIV:575092-576097 1.0000 100 chrXIV:602028-602532 1.0000 100 chrXIV:631528-632011 1.0000 100 chrXIV:632494-632876 1.0000 100 chrXIV:725714-726351 1.0000 100 chrXIV:783818-784320 1.0000 100 chrXV:29814-30853 1.0000 100 chrXV:79747-80117 1.0000 100 chrXV:80371-81155 1.0000 100 chrXV:92697-94766 1.0000 100 chrXV:110149-110658 1.0000 100 chrXV:110855-111189 1.0000 100 chrXV:113505-113883 1.0000 100 chrXV:159206-160135 1.0000 100 chrXV:161130-161400 1.0000 100 chrXV:167991-168847 1.0000 100 chrXV:216298-216671 1.0000 100 chrXV:226545-226863 1.0000 100 chrXV:228050-228519 1.0000 100 chrXV:274477-275005 1.0000 100 chrXV:282027-284083 1.0000 100 chrXV:287239-288402 1.0000 100 chrXV:300885-302094 1.0000 100 chrXV:340155-340752 1.0000 100 chrXV:353939-354298 1.0000 100 chrXV:424263-424723 1.0000 100 chrXV:438418-438995 1.0000 100 chrXV:444646-446226 1.0000 100 chrXV:464299-465185 1.0000 100 chrXV:487443-487766 1.0000 100 chrXV:505013-505470 1.0000 100 chrXV:571737-572136 1.0000 100 chrXV:594315-594620 1.0000 100 chrXV:619120-621289 1.0000 100 chrXV:663487-664070 1.0000 100 chrXV:670967-672029 1.0000 100 chrXV:678223-679134 1.0000 100 chrXV:710080-710676 1.0000 100 chrXV:779736-780974 1.0000 100 chrXV:797012-798347 1.0000 100 chrXV:854070-854738 1.0000 100 chrXV:866543-867959 1.0000 100 chrXV:968162-968391 1.0000 100 chrXV:976381-976615 1.0000 100 chrXV:978644-979109 1.0000 100 chrXV:979745-981167 1.0000 100 chrXV:987515-987947 1.0000 100 chrXV:988279-988488 1.0000 100 chrXV:1003945-1004978 1.0000 100 chrXV:1025705-1026265 1.0000 100 chrXV:1027767-1029651 1.0000 100 chrXV:1031465-1032265 1.0000 100 chrXVI:55841-56346 1.0000 100 chrXVI:75346-76768 1.0000 100 chrXVI:172875-174026 1.0000 100 chrXVI:188623-188924 1.0000 100 chrXVI:194108-194594 1.0000 100 chrXVI:210065-210574 1.0000 100 chrXVI:281594-281865 1.0000 100 chrXVI:297017-297317 1.0000 100 chrXVI:302123-302356 1.0000 100 chrXVI:302642-304039 1.0000 100 chrXVI:338623-339282 1.0000 100 chrXVI:378706-378984 1.0000 100 chrXVI:404600-406008 1.0000 100 chrXVI:406215-407807 1.0000 100 chrXVI:407982-408376 1.0000 100 chrXVI:424484-425522 1.0000 100 chrXVI:432561-434320 1.0000 100 chrXVI:435283-436174 1.0000 100 chrXVI:520097-520507 1.0000 100 chrXVI:559957-560451 1.0000 100 chrXVI:571652-572519 1.0000 100 chrXVI:581818-582488 1.0000 100 chrXVI:622350-622828 1.0000 100 chrXVI:645382-646133 1.0000 100 chrXVI:689348-689866 1.0000 100 chrXVI:699941-700688 1.0000 100 chrXVI:731612-732282 1.0000 100 chrXVI:744090-744632 1.0000 100 chrXVI:768709-769482 1.0000 100 chrXVI:775679-776014 1.0000 100 chrXVI:794477-794765 1.0000 100 chrXVI:810582-810842 1.0000 100 chrXVI:819354-820203 1.0000 100 chrXVI:860163-860653 1.0000 100 chrXVI:880221-880565 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--PDR3/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--PDR3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--PDR3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 524 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 52400 N= 524 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--PDR3/background): A 0.308 C 0.192 G 0.192 T 0.308 ******************************************************************************** ******************************************************************************** MOTIF DMBSGGRATCGAACCSVKGAYCTYCNSRTT MEME-1 width = 30 sites = 75 llr = 1541 E-value = 3.9e-329 ******************************************************************************** -------------------------------------------------------------------------------- Motif DMBSGGRATCGAACCSVKGAYCTYCNSRTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 43:13:65:::aa:::3:37:::133:5:1 pos.-specific C :5441::1:7:::a7542::6734533211 probability G 42457a42::a:::133571:111127312 matrix T 3:2::::2a3::::21:3:2427413::77 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * * **** * * Entropy 1.2 * ****** * * * (29.6 bits) 1.0 **** ******** * ** * 0.7 ****** ******** ****** * * 0.5 ******* ***************** **** 0.2 ************************* **** 0.0 ------------------------------ Multilevel GCGGGGAATCGAACCCCGGACCTCCAGATT consensus AACCA GG T TGGTATT CTACCG G sequence T T AC T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRATCGAACCSVKGAYCTYCNSRTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIV:1016960-1017516 + 26 5.15e-13 AAACTCCGAA GCGGGGAGTCGAACCCCGGTCTCCACGGTG AGAACGTGAT chrXII:1051993-1052209 + 27 8.57e-13 TAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrVII:738923-739478 - 9 8.57e-13 AAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCAC chrV:551019-551574 + 46 8.57e-13 AATTGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrV:443116-443340 + 31 8.57e-13 ATATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrIX:183283-183676 + 18 8.57e-13 AAGTGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrII:197292-197835 - 18 8.57e-13 AAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrXIII:290572-291073 - 64 1.19e-12 CTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrVII:401414-401612 + 71 1.19e-12 ATACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGTG chrV:486991-487665 + 60 1.19e-12 ATACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrV:176803-177440 - 63 1.19e-12 ACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrII:644957-645413 - 67 1.19e-12 CGAT ACGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrIII:123386-123794 + 44 3.53e-12 TGTGGGGCGA GCCGGGACTCGAACCCGGGACCTCCCGCAC CCTAAGCGAG chrXIII:480371-480932 + 27 8.37e-12 AGAAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrX:414779-415254 - 36 8.37e-12 ATTAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrVI:226500-226965 + 13 8.37e-12 ATAAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrIX:300008-300492 + 35 8.37e-12 GATAGCCCTG TAGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrXIII:131655-132073 + 18 1.10e-11 AAGCACTCAC GATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrX:374236-374821 + 35 1.10e-11 AAGCACTCAC GATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrVII:736199-736519 - 66 1.10e-11 CTCAC GATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrXII:214684-215065 + 66 1.65e-11 AAATGGACGC AACCGGAATCGAACCGATGACCTCTTCCTT GCAAG chrV:311740-312291 + 65 1.65e-11 CATTGGACGC AACCGGAATCGAACCGATGACCTCTTCCTT GCAAGG chrXVI:860163-860653 - 55 2.14e-11 ATCTGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrVI:180690-181262 + 55 2.14e-11 GACTGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrIV:83355-83792 - 59 2.14e-11 ACTTGCGCAA GCCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrXIII:586410-586890 + 43 4.00e-11 AAATGATTTC GCCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXIII:420359-420841 + 45 4.00e-11 AAATGATTTC GCCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXIII:372232-372761 + 6 4.00e-11 ATTTC GCCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXI:307918-308455 + 15 4.00e-11 AATTGATTTC GCCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrVII:823347-823689 - 51 4.00e-11 AAATGATTTC GCCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrV:438516-439003 - 28 4.00e-11 AATTGATTTC GCCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrIV:802600-802838 + 69 5.73e-11 AAGAGGTCCT ACCCGGATTCGAACCGGGGTTGTCCGGATC AA chrIII:168089-168556 + 36 5.73e-11 AAAAGGTCCT ACCCGGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrVIII:475501-475905 + 60 6.45e-11 AAATGTTCCA ACCGAGGATCGAACTCGGGACCTTTGCCGT GTGAAGGCAA chrII:326474-327162 + 31 8.14e-11 GTTTGATCCA ACCGAGGTTCGAACTCGGGATCTTCGCCGT GTAAAGGCGA chrV:130832-131364 + 41 1.02e-10 AATAGGTCTT ACCCGGATTCGAACCGGGGTTGTTCGGATC AAAACCGAAA chrXV:976381-976615 - 9 1.42e-10 TTTTGCTCCA GGGGAGGTTCGAACTCTCGACCTTCAGATT ATGAGACT chrXIII:572440-573436 + 2 1.42e-10 A GGGGAGGTTCGAACTCTCGACCTTCAGATT ATGAGACTGA chrX:422668-423336 - 21 1.42e-10 ATGTGCTCCA GGGGAGGTTCGAACTCTCGACCTTCAGATT ATGAGACTGA chrXIV:104593-105054 - 68 1.59e-10 TCC AATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrIX:325532-326074 - 31 1.59e-10 AATTGCTTCC AATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrIX:174896-175203 - 68 1.59e-10 TCC AATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrII:266214-266707 - 4 1.59e-10 AAATGCTTCC AATCGGATTTGAACCGATGATCTCCACATT ACT chrXIII:837734-838209 - 59 1.97e-10 ATATCTCCCG GGGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGGT chrXIII:168682-168984 - 64 1.97e-10 TCTCCCG GGGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrVI:210445-210869 + 19 1.97e-10 ATATCTCCCG GGGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGGT chrVI:167246-167691 - 71 1.97e-10 . GGGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrX:538525-538736 - 10 2.43e-10 CAACGTTCCG TACGGGACTCGAACCCGCAGTCTTCTCCTT AGGAGGGAG chrXIII:195952-196295 + 2 3.30e-10 A GCTGGGAATTGAACCCAGGGCCTCTCGCAT GCTTTGTCTT chrXII:374202-374657 - 12 4.91e-10 AATCTTCCCC GCCAGGACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrXI:490767-491204 - 69 4.91e-10 CC GCCAGGACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrIV:619699-620219 + 67 4.91e-10 AATCTTCCCC GCCAGGACTTGAACCTGGAATCTTCTGGTT CGTA chrXV:438418-438995 - 46 1.14e-09 GAACTCCTCA TAGGGGGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrXIV:96000-96457 + 70 1.36e-09 ATTTGAGCGG TACGAGAATCGAACCCGTGTCCCCACCTTG G chrXVI:622350-622828 + 8 1.62e-09 TGCGAAT TCTGTGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrXVI:559957-560451 + 51 1.62e-09 AAATGCGAAT TCTGTGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrXIII:463437-463831 - 5 1.62e-09 AATCTCCGCG ACGGGGAATTGAACCCCGATCTGGCACGCG ACAA chrXIII:352083-352639 - 23 1.62e-09 TAATGCGAAT TCTGTGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrXII:426832-427468 - 67 1.62e-09 CGCG ACGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrXI:513222-513514 + 21 1.62e-09 AATCTCCGCG ACGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrX:204528-205048 - 32 1.62e-09 AATCTCCGCG ACGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrVII:544417-544846 + 3 1.62e-09 CG ACGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrIX:336091-336685 + 18 1.62e-09 AATCTCCGCG ACGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrII:405682-406336 - 36 1.62e-09 AATCTCCGCG ACGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrXVI:810582-810842 - 51 1.92e-09 TTACGACCCC AGTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXIV:632494-632876 - 1 1.92e-09 AAACGACCCC AGTGAGGGTTGAACTCACGATCTTGCGATT chrVII:730958-731369 - 61 1.92e-09 AAACGACCCC AGTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrVI:137242-137772 + 36 1.92e-09 AAACGACCCC AGTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXIII:379041-379621 + 29 2.67e-09 AATTGAAACG GACAGGAATTGAACCTGCAACCCTTCGATT GCAATCTTAT chrVII:878424-879073 + 19 2.67e-09 AAATGAAACG GACAGGAATTGAACCTGCAACCCTTCGATT GCAATCTTAT chrVIII:466905-467202 - 22 6.76e-09 TAATGCCACC TGCCAGAATTGAACTAGCGACCTTTGCATT ACAAGTGCAA chrVII:774155-774695 - 10 1.19e-08 ATTTGGACGA GTCCGGAATCGAACCGGAGACCTCTCCCAT GCTAAGGGA chrXVI:744090-744632 - 8 1.89e-08 TTTTGCCACC TGTCAGAATTGAACTAACGACCTTTGCATT ACAAGTG chrIII:149740-150170 - 50 3.71e-08 TAATAGCGCC GCTCGGTTTCGATCCGAGGACATCAGGGTT ATGAGCCCTG chrXIII:362941-363284 - 37 3.10e-07 AAATGCCATC TCCTAGAATCGAACCAGGGTTTCATCGGCC ACAACGATGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRATCGAACCSVKGAYCTYCNSRTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1016960-1017516 5.2e-13 25_[+1]_45 chrXII:1051993-1052209 8.6e-13 26_[+1]_44 chrVII:738923-739478 8.6e-13 8_[-1]_62 chrV:551019-551574 8.6e-13 45_[+1]_25 chrV:443116-443340 8.6e-13 30_[+1]_40 chrIX:183283-183676 8.6e-13 17_[+1]_53 chrII:197292-197835 8.6e-13 17_[-1]_53 chrXIII:290572-291073 1.2e-12 63_[-1]_7 chrVII:401414-401612 1.2e-12 70_[+1] chrV:486991-487665 1.2e-12 59_[+1]_11 chrV:176803-177440 1.2e-12 62_[-1]_8 chrII:644957-645413 1.2e-12 66_[-1]_4 chrIII:123386-123794 3.5e-12 43_[+1]_27 chrXIII:480371-480932 8.4e-12 26_[+1]_44 chrX:414779-415254 8.4e-12 35_[-1]_35 chrVI:226500-226965 8.4e-12 12_[+1]_58 chrIX:300008-300492 8.4e-12 34_[+1]_36 chrXIII:131655-132073 1.1e-11 17_[+1]_53 chrX:374236-374821 1.1e-11 34_[+1]_36 chrVII:736199-736519 1.1e-11 65_[-1]_5 chrXII:214684-215065 1.6e-11 65_[+1]_5 chrV:311740-312291 1.6e-11 64_[+1]_6 chrXVI:860163-860653 2.1e-11 54_[-1]_16 chrVI:180690-181262 2.1e-11 54_[+1]_16 chrIV:83355-83792 2.1e-11 58_[-1]_12 chrXIII:586410-586890 4e-11 42_[+1]_28 chrXIII:420359-420841 4e-11 44_[+1]_26 chrXIII:372232-372761 4e-11 5_[+1]_65 chrXI:307918-308455 4e-11 14_[+1]_56 chrVII:823347-823689 4e-11 50_[-1]_20 chrV:438516-439003 4e-11 27_[-1]_43 chrIV:802600-802838 5.7e-11 68_[+1]_2 chrIII:168089-168556 5.7e-11 35_[+1]_35 chrVIII:475501-475905 6.5e-11 59_[+1]_11 chrII:326474-327162 8.1e-11 30_[+1]_40 chrV:130832-131364 1e-10 40_[+1]_30 chrXV:976381-976615 1.4e-10 8_[-1]_62 chrXIII:572440-573436 1.4e-10 1_[+1]_69 chrX:422668-423336 1.4e-10 20_[-1]_50 chrXIV:104593-105054 1.6e-10 67_[-1]_3 chrIX:325532-326074 1.6e-10 30_[-1]_40 chrIX:174896-175203 1.6e-10 67_[-1]_3 chrII:266214-266707 1.6e-10 3_[-1]_67 chrXIII:837734-838209 2e-10 58_[-1]_12 chrXIII:168682-168984 2e-10 63_[-1]_7 chrVI:210445-210869 2e-10 18_[+1]_52 chrVI:167246-167691 2e-10 70_[-1] chrX:538525-538736 2.4e-10 9_[-1]_61 chrXIII:195952-196295 3.3e-10 1_[+1]_69 chrXII:374202-374657 4.9e-10 11_[-1]_59 chrXI:490767-491204 4.9e-10 68_[-1]_2 chrIV:619699-620219 4.9e-10 66_[+1]_4 chrXV:438418-438995 1.1e-09 45_[-1]_25 chrXIV:96000-96457 1.4e-09 69_[+1]_1 chrXVI:622350-622828 1.6e-09 7_[+1]_63 chrXVI:559957-560451 1.6e-09 50_[+1]_20 chrXIII:463437-463831 1.6e-09 4_[-1]_66 chrXIII:352083-352639 1.6e-09 22_[-1]_48 chrXII:426832-427468 1.6e-09 66_[-1]_4 chrXI:513222-513514 1.6e-09 20_[+1]_50 chrX:204528-205048 1.6e-09 31_[-1]_39 chrVII:544417-544846 1.6e-09 2_[+1]_68 chrIX:336091-336685 1.6e-09 17_[+1]_53 chrII:405682-406336 1.6e-09 35_[-1]_35 chrXVI:810582-810842 1.9e-09 50_[-1]_20 chrXIV:632494-632876 1.9e-09 [-1]_70 chrVII:730958-731369 1.9e-09 60_[-1]_10 chrVI:137242-137772 1.9e-09 35_[+1]_35 chrXIII:379041-379621 2.7e-09 28_[+1]_42 chrVII:878424-879073 2.7e-09 18_[+1]_52 chrVIII:466905-467202 6.8e-09 21_[-1]_49 chrVII:774155-774695 1.2e-08 9_[-1]_61 chrXVI:744090-744632 1.9e-08 7_[-1]_63 chrIII:149740-150170 3.7e-08 49_[-1]_21 chrXIII:362941-363284 3.1e-07 36_[-1]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRATCGAACCSVKGAYCTYCNSRTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DMBSGGRATCGAACCSVKGAYCTYCNSRTT width=30 seqs=75 chrIV:1016960-1017516 ( 26) GCGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrXII:1051993-1052209 ( 27) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrVII:738923-739478 ( 9) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrV:551019-551574 ( 46) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrV:443116-443340 ( 31) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrIX:183283-183676 ( 18) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrII:197292-197835 ( 18) TAGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrXIII:290572-291073 ( 64) ACGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrVII:401414-401612 ( 71) ACGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrV:486991-487665 ( 60) ACGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrV:176803-177440 ( 63) ACGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrII:644957-645413 ( 67) ACGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrIII:123386-123794 ( 44) GCCGGGACTCGAACCCGGGACCTCCCGCAC 1 chrXIII:480371-480932 ( 27) TAGGGGGCTCGAACCCCTAACCTTATGATT 1 chrX:414779-415254 ( 36) TAGGGGGCTCGAACCCCTAACCTTATGATT 1 chrVI:226500-226965 ( 13) TAGGGGGCTCGAACCCCTAACCTTATGATT 1 chrIX:300008-300492 ( 35) TAGGGGGCTCGAACCCCTAACCTTATGATT 1 chrXIII:131655-132073 ( 18) GATGGGGGTCGAACCCATAATCTTCTGATT 1 chrX:374236-374821 ( 35) GATGGGGGTCGAACCCATAATCTTCTGATT 1 chrVII:736199-736519 ( 66) GATGGGGGTCGAACCCATAATCTTCTGATT 1 chrXII:214684-215065 ( 66) AACCGGAATCGAACCGATGACCTCTTCCTT 1 chrV:311740-312291 ( 65) AACCGGAATCGAACCGATGACCTCTTCCTT 1 chrXVI:860163-860653 ( 55) GCCCGGAATCGAACCGGGGGCCCAACGATG 1 chrVI:180690-181262 ( 55) GCCCGGAATCGAACCGGGGGCCCAACGATG 1 chrIV:83355-83792 ( 59) GCCCGGAATCGAACCGGGGGCCCAACGATG 1 chrXIII:586410-586890 ( 43) GCCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrXIII:420359-420841 ( 45) GCCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrXIII:372232-372761 ( 6) GCCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrXI:307918-308455 ( 15) GCCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrVII:823347-823689 ( 51) GCCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrV:438516-439003 ( 28) GCCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrIV:802600-802838 ( 69) ACCCGGATTCGAACCGGGGTTGTCCGGATC 1 chrIII:168089-168556 ( 36) ACCCGGATTCGAACCGGGGTTGTCCGGATC 1 chrVIII:475501-475905 ( 60) ACCGAGGATCGAACTCGGGACCTTTGCCGT 1 chrII:326474-327162 ( 31) ACCGAGGTTCGAACTCGGGATCTTCGCCGT 1 chrV:130832-131364 ( 41) ACCCGGATTCGAACCGGGGTTGTTCGGATC 1 chrXV:976381-976615 ( 9) GGGGAGGTTCGAACTCTCGACCTTCAGATT 1 chrXIII:572440-573436 ( 2) GGGGAGGTTCGAACTCTCGACCTTCAGATT 1 chrX:422668-423336 ( 21) GGGGAGGTTCGAACTCTCGACCTTCAGATT 1 chrXIV:104593-105054 ( 68) AATCGGATTTGAACCGATGATCTCCACATT 1 chrIX:325532-326074 ( 31) AATCGGATTTGAACCGATGATCTCCACATT 1 chrIX:174896-175203 ( 68) AATCGGATTTGAACCGATGATCTCCACATT 1 chrII:266214-266707 ( 4) AATCGGATTTGAACCGATGATCTCCACATT 1 chrXIII:837734-838209 ( 59) GGGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrXIII:168682-168984 ( 64) GGGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrVI:210445-210869 ( 19) GGGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrVI:167246-167691 ( 71) GGGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrX:538525-538736 ( 10) TACGGGACTCGAACCCGCAGTCTTCTCCTT 1 chrXIII:195952-196295 ( 2) GCTGGGAATTGAACCCAGGGCCTCTCGCAT 1 chrXII:374202-374657 ( 12) GCCAGGACTTGAACCTGGAATCTTCTGGTT 1 chrXI:490767-491204 ( 69) GCCAGGACTTGAACCTGGAATCTTCTGGTT 1 chrIV:619699-620219 ( 67) GCCAGGACTTGAACCTGGAATCTTCTGGTT 1 chrXV:438418-438995 ( 46) TAGGGGGCTCGAACCCCTGACATTTCGGTA 1 chrXIV:96000-96457 ( 70) TACGAGAATCGAACCCGTGTCCCCACCTTG 1 chrXVI:622350-622828 ( 8) TCTGTGGATCGAACACAGGACCTCCAGATA 1 chrXVI:559957-560451 ( 51) TCTGTGGATCGAACACAGGACCTCCAGATA 1 chrXIII:463437-463831 ( 5) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrXIII:352083-352639 ( 23) TCTGTGGATCGAACACAGGACCTCCAGATA 1 chrXII:426832-427468 ( 67) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrXI:513222-513514 ( 21) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrX:204528-205048 ( 32) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrVII:544417-544846 ( 3) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrIX:336091-336685 ( 18) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrII:405682-406336 ( 36) ACGGGGAATTGAACCCCGATCTGGCACGCG 1 chrXVI:810582-810842 ( 51) AGTGAGGGTTGAACTCACGATCTTGCGATT 1 chrXIV:632494-632876 ( 1) AGTGAGGGTTGAACTCACGATCTTGCGATT 1 chrVII:730958-731369 ( 61) AGTGAGGGTTGAACTCACGATCTTGCGATT 1 chrVI:137242-137772 ( 36) AGTGAGGGTTGAACTCACGATCTTGCGATT 1 chrXIII:379041-379621 ( 29) GACAGGAATTGAACCTGCAACCCTTCGATT 1 chrVII:878424-879073 ( 19) GACAGGAATTGAACCTGCAACCCTTCGATT 1 chrVIII:466905-467202 ( 22) TGCCAGAATTGAACTAGCGACCTTTGCATT 1 chrVII:774155-774695 ( 10) GTCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrXVI:744090-744632 ( 8) TGTCAGAATTGAACTAACGACCTTTGCATT 1 chrIII:149740-150170 ( 50) GCTCGGTTTCGATCCGAGGACATCAGGGTT 1 chrXIII:362941-363284 ( 37) TCCTAGAATCGAACCAGGGTTTCATCGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRATCGAACCSVKGAYCTYCNSRTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 37204 bayes= 10.7628 E= 3.9e-329 23 -1287 101 -28 6 136 -15 -453 -1287 91 111 -44 -221 96 151 -453 -28 -185 177 -294 -1287 -1287 238 -1287 86 -1287 115 -453 64 -53 24 -94 -1287 -1287 -1287 170 -1287 185 -1287 -1 -1287 -1287 238 -1287 170 -1287 -1287 -1287 168 -1287 -1287 -453 -1287 238 -1287 -1287 -294 182 -185 -44 -294 151 85 -221 -28 96 80 -294 -453 15 136 -14 -21 -1287 193 -1287 117 -1287 -153 -36 -1287 164 -1287 38 -353 179 -68 -72 -1287 40 -104 109 -253 115 -104 47 -28 151 -185 -107 -14 54 -4 -28 -1287 85 177 -1287 60 -4 80 -453 -294 -85 -85 128 -253 -153 24 109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRATCGAACCSVKGAYCTYCNSRTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 75 E= 3.9e-329 0.360000 0.000000 0.386667 0.253333 0.320000 0.493333 0.173333 0.013333 0.000000 0.360000 0.413333 0.226667 0.066667 0.373333 0.546667 0.013333 0.253333 0.053333 0.653333 0.040000 0.000000 0.000000 1.000000 0.000000 0.560000 0.000000 0.426667 0.013333 0.480000 0.133333 0.226667 0.160000 0.000000 0.000000 0.000000 1.000000 0.000000 0.693333 0.000000 0.306667 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.986667 0.000000 0.000000 0.013333 0.000000 1.000000 0.000000 0.000000 0.040000 0.680000 0.053333 0.226667 0.040000 0.546667 0.346667 0.066667 0.253333 0.373333 0.333333 0.040000 0.013333 0.213333 0.493333 0.280000 0.266667 0.000000 0.733333 0.000000 0.693333 0.000000 0.066667 0.240000 0.000000 0.600000 0.000000 0.400000 0.026667 0.666667 0.120000 0.186667 0.000000 0.253333 0.093333 0.653333 0.053333 0.426667 0.093333 0.426667 0.253333 0.546667 0.053333 0.146667 0.280000 0.280000 0.186667 0.253333 0.000000 0.346667 0.653333 0.000000 0.466667 0.186667 0.333333 0.013333 0.040000 0.106667 0.106667 0.746667 0.053333 0.066667 0.226667 0.653333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DMBSGGRATCGAACCSVKGAYCTYCNSRTT MEME-1 regular expression -------------------------------------------------------------------------------- [GAT][CA][GCT][GC][GA]G[AG][AG]T[CT]GAAC[CT][CG][CGA][GTC][GA][AT][CT]C[TC][CT][CA][ACT][GC][AG]T[TG] -------------------------------------------------------------------------------- Time 264.36 secs. ******************************************************************************** ******************************************************************************** MOTIF YGVVSSCTYWAMCMACTRRGCYAHVVVVSC MEME-2 width = 30 sites = 75 llr = 1226 E-value = 3.7e-196 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGVVSSCTYWAMCMACTRRGCYAHVVVVSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 113311111455:39::433::a4334411 pos.-specific C 522354624:15a5:8:12:a6:3332248 probability G 253344121:21:11::357::::333451 matrix T 2211::26462::::2a2:::4:311111: bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * * * Relative 1.4 * *** * * * Entropy 1.2 * *** **** * (23.6 bits) 1.0 * * *** **** * 0.7 *** ** *** ***** ** 0.5 * **** * ****** ***** ** 0.2 ****************************** 0.0 ------------------------------ Multilevel CGGACCCTTTACCCACTAGGCCAAAGAAGC consensus TCAGGGT CATA A T GAA T CCAGGC sequence TCC G C TGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGVVSSCTYWAMCMACTRRGCYAHVVVVSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXII:1051993-1052209 + 64 2.21e-12 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC ATGAAAA chrV:443116-443340 + 68 2.21e-12 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC AAA chrIX:183283-183676 + 55 2.21e-12 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC AGGAATTTGT chrXII:656849-657198 + 4 2.23e-11 AAG GGAGCGCGCTACCGACTACGCCACACGCCC AATTTTCTTG chrXII:875217-875579 - 28 1.87e-10 GCTTAAAAGC CGAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrVII:115263-115736 - 39 1.87e-10 GCTTAAAAGC CGAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrXV:353939-354298 + 16 2.17e-10 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC AGTAAACCGT chrXIV:104593-105054 - 32 2.17e-10 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC TCAGAACTTG chrIX:174896-175203 - 32 2.17e-10 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC TCGTACTTGT chrXII:962846-963237 + 35 3.38e-10 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC GTCGATAATA chrXI:84022-84421 - 37 3.38e-10 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC ATACAAATTT chrX:424303-424723 + 23 3.38e-10 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC ATCTTATTTA chrIV:519655-519898 - 17 3.38e-10 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC GTAAAATCAC chrX:617688-618127 - 62 4.50e-10 ACCTAAATC TGACGCCTTAAACCACTCGGCCAAACTCCC ATTGTTTGTT chrXII:605230-605637 + 20 5.95e-10 TGCTATAAGC ACGAAGCTCTAACCACTGAGCTACACGAGC ATTTTCGAAA chrXVI:689348-689866 - 8 1.02e-09 GATTTCAAGT CTGTCGCCTTAACCACTCGGCCATAGTGCC CAAAATA chrXIV:374650-375096 - 46 1.02e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAGTCCGC TTATTTTTCT chrXVI:622350-622828 + 63 1.33e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC ATATCAGA chrXIII:504635-505159 - 48 1.33e-09 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATCTGT chrXII:627892-628885 - 45 1.33e-09 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrVIII:358333-358776 + 36 1.33e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATTTG chrVIII:237754-238081 + 43 1.33e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATTTG chrVII:440635-440926 + 48 1.33e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC ATATATTTTA chrVII:422892-423341 - 26 1.33e-09 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATCTGT chrII:36234-36557 - 53 1.33e-09 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC TTACAACTAA chrXVI:810582-810842 - 14 2.82e-09 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC GCAAATAATG chrXI:74433-74786 - 65 2.82e-09 ACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC TAATTGCTAT chrVII:730958-731369 - 24 2.82e-09 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC TTTTTGACTA chrIII:127528-127881 - 62 2.82e-09 TTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC ATTTTATCTT chrXIII:572440-573436 + 38 3.59e-09 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC TGTCTGTTAT chrX:390937-391303 + 16 3.59e-09 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC ACTATTTCTT chrIV:1175601-1176040 - 59 3.59e-09 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC TTTGTTTTGT chrXIII:480371-480932 + 63 5.72e-09 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TACTTATT chrVI:226500-226965 + 49 5.72e-09 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC ATTTTAATCT chrIX:300008-300492 + 71 5.72e-09 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC chrIV:1201544-1201965 - 46 5.72e-09 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TATTTATTTG chrIII:151153-151567 + 17 5.72e-09 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TCTTTAATTA chrVII:700205-701152 - 47 1.24e-08 GACCTCGACC TGACGCCTTAGACCACTCGGCCAGAGTACC AATTCATCTG chrXIII:195952-196295 + 68 1.53e-08 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTG chrXII:92418-92725 - 27 1.53e-08 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTATTAACTT chrVIII:388728-389183 + 61 1.53e-08 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC ATGTATCTGT chrI:138962-139344 - 49 1.53e-08 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC GTACTAATTG chrIV:437553-438068 - 12 1.70e-08 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC TTACTAATGA chrXIII:372232-372761 + 43 2.30e-08 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC AGGTTTTATT chrXI:307918-308455 + 52 2.30e-08 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTTAATTGT chrX:378138-378552 - 65 2.30e-08 TTAAGC AGATGCCATAACCGACTAGACCACGAAACC TATTAATTTA chrVII:823347-823689 - 14 2.30e-08 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTCTTATTG chrXIII:808130-808522 + 12 2.81e-08 GGATCAGAAC CGAAAGTGATAACCACTACACTATAGGACC TTTTTCTTCT chrXII:448478-448988 + 9 2.81e-08 ATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC GGAACTTCTT chrIII:168089-168556 + 71 2.81e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC chrII:350588-351043 - 62 5.46e-08 GATCAAAAC CGAAAGTGATAACCACTACACTATAAAACC CTTTTATTGA chrXIII:837734-838209 - 7 5.98e-08 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TCAATT chrXIII:168682-168984 - 12 5.98e-08 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TGACTATTTT chrX:542795-543260 + 38 5.98e-08 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TATTTAATTG chrVI:210445-210869 + 71 5.98e-08 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG chrVI:167246-167691 - 19 5.98e-08 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TCGTTTTTGT chrII:326474-327162 + 68 6.54e-08 CGTGTAAAGG CGACGTCTTGAACCACTGGACCATTGGACC CGG chrXV:110855-111189 + 32 7.82e-08 CCTTGGAAGG GTGGGATGATAACCACTACACTAACCGCCC GGGTTAATTG chrVII:1004042-1004403 - 44 8.53e-08 GCATTACAAG TGCAACGCTCTACCACTAAGCTAAGGAGGC AAACCCTTGA chrVII:661537-661934 - 64 8.53e-08 TTACAAG TGCAACGCTCTACCACTAAGCTAAGGAGGC AAATTTTTAC chrXI:490767-491204 - 33 9.31e-08 GGTTCGTAGC CAGACGCCGTGACCATTGGGCCACGAGGAA CAAGAATTAT chrXVI:860163-860653 - 21 1.10e-07 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrIV:83355-83792 - 25 1.10e-07 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TAAGTGAACT chrXII:426832-427468 - 32 1.42e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA TAAGAAACAC chrXI:513222-513514 + 56 1.42e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA ACGTTATTTG chrVII:544417-544846 + 38 1.42e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA AGAAATATCT chrIX:336091-336685 + 53 1.42e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA TTTGTTTCTA chrIX:324199-324548 + 22 1.42e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA ATATTAGATG chrII:405682-406336 - 1 1.42e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA chrXIII:131655-132073 + 53 3.58e-07 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TAAATTTCTT chrXI:162438-162680 + 20 3.58e-07 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TAATATTTGT chrX:374236-374821 + 70 3.58e-07 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC T chrVII:736199-736519 - 31 3.58e-07 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TATTGAAATT chrXVI:775679-776014 + 11 1.33e-06 AGATTTGCAA TCTGCTGCGCTACCACTGCGCCATACGAGC TTTTGAATTA chrIV:1075326-1075753 + 26 3.65e-06 CCGTGTGAAG GCAACGTGATAGCCGCTACACTATTGGAAC AATATTACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGVVSSCTYWAMCMACTRRGCYAHVVVVSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:1051993-1052209 2.2e-12 63_[+2]_7 chrV:443116-443340 2.2e-12 67_[+2]_3 chrIX:183283-183676 2.2e-12 54_[+2]_16 chrXII:656849-657198 2.2e-11 3_[+2]_67 chrXII:875217-875579 1.9e-10 27_[-2]_43 chrVII:115263-115736 1.9e-10 38_[-2]_32 chrXV:353939-354298 2.2e-10 15_[+2]_55 chrXIV:104593-105054 2.2e-10 31_[-2]_39 chrIX:174896-175203 2.2e-10 31_[-2]_39 chrXII:962846-963237 3.4e-10 34_[+2]_36 chrXI:84022-84421 3.4e-10 36_[-2]_34 chrX:424303-424723 3.4e-10 22_[+2]_48 chrIV:519655-519898 3.4e-10 16_[-2]_54 chrX:617688-618127 4.5e-10 61_[-2]_9 chrXII:605230-605637 5.9e-10 19_[+2]_51 chrXVI:689348-689866 1e-09 7_[-2]_63 chrXIV:374650-375096 1e-09 45_[-2]_25 chrXVI:622350-622828 1.3e-09 62_[+2]_8 chrXIII:504635-505159 1.3e-09 47_[-2]_23 chrXII:627892-628885 1.3e-09 44_[-2]_26 chrVIII:358333-358776 1.3e-09 35_[+2]_35 chrVIII:237754-238081 1.3e-09 42_[+2]_28 chrVII:440635-440926 1.3e-09 47_[+2]_23 chrVII:422892-423341 1.3e-09 25_[-2]_45 chrII:36234-36557 1.3e-09 52_[-2]_18 chrXVI:810582-810842 2.8e-09 13_[-2]_57 chrXI:74433-74786 2.8e-09 64_[-2]_6 chrVII:730958-731369 2.8e-09 23_[-2]_47 chrIII:127528-127881 2.8e-09 61_[-2]_9 chrXIII:572440-573436 3.6e-09 37_[+2]_33 chrX:390937-391303 3.6e-09 15_[+2]_55 chrIV:1175601-1176040 3.6e-09 58_[-2]_12 chrXIII:480371-480932 5.7e-09 62_[+2]_8 chrVI:226500-226965 5.7e-09 48_[+2]_22 chrIX:300008-300492 5.7e-09 70_[+2] chrIV:1201544-1201965 5.7e-09 45_[-2]_25 chrIII:151153-151567 5.7e-09 16_[+2]_54 chrVII:700205-701152 1.2e-08 46_[-2]_24 chrXIII:195952-196295 1.5e-08 67_[+2]_3 chrXII:92418-92725 1.5e-08 26_[-2]_44 chrVIII:388728-389183 1.5e-08 60_[+2]_10 chrI:138962-139344 1.5e-08 48_[-2]_22 chrIV:437553-438068 1.7e-08 11_[-2]_59 chrXIII:372232-372761 2.3e-08 42_[+2]_28 chrXI:307918-308455 2.3e-08 51_[+2]_19 chrX:378138-378552 2.3e-08 64_[-2]_6 chrVII:823347-823689 2.3e-08 13_[-2]_57 chrXIII:808130-808522 2.8e-08 11_[+2]_59 chrXII:448478-448988 2.8e-08 8_[+2]_62 chrIII:168089-168556 2.8e-08 70_[+2] chrII:350588-351043 5.5e-08 61_[-2]_9 chrXIII:837734-838209 6e-08 6_[-2]_64 chrXIII:168682-168984 6e-08 11_[-2]_59 chrX:542795-543260 6e-08 37_[+2]_33 chrVI:210445-210869 6e-08 70_[+2] chrVI:167246-167691 6e-08 18_[-2]_52 chrII:326474-327162 6.5e-08 67_[+2]_3 chrXV:110855-111189 7.8e-08 31_[+2]_39 chrVII:1004042-1004403 8.5e-08 43_[-2]_27 chrVII:661537-661934 8.5e-08 63_[-2]_7 chrXI:490767-491204 9.3e-08 32_[-2]_38 chrXVI:860163-860653 1.1e-07 20_[-2]_50 chrIV:83355-83792 1.1e-07 24_[-2]_46 chrXII:426832-427468 1.4e-07 31_[-2]_39 chrXI:513222-513514 1.4e-07 55_[+2]_15 chrVII:544417-544846 1.4e-07 37_[+2]_33 chrIX:336091-336685 1.4e-07 52_[+2]_18 chrIX:324199-324548 1.4e-07 21_[+2]_49 chrII:405682-406336 1.4e-07 [-2]_70 chrXIII:131655-132073 3.6e-07 52_[+2]_18 chrXI:162438-162680 3.6e-07 19_[+2]_51 chrX:374236-374821 3.6e-07 69_[+2]_1 chrVII:736199-736519 3.6e-07 30_[-2]_40 chrXVI:775679-776014 1.3e-06 10_[+2]_60 chrIV:1075326-1075753 3.6e-06 25_[+2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGVVSSCTYWAMCMACTRRGCYAHVVVVSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGVVSSCTYWAMCMACTRRGCYAHVVVVSC width=30 seqs=75 chrXII:1051993-1052209 ( 64) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrV:443116-443340 ( 68) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrIX:183283-183676 ( 55) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXII:656849-657198 ( 4) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrXII:875217-875579 ( 28) CGAACGCTCTACCAACTGAGCTAACAAGGA 1 chrVII:115263-115736 ( 39) CGAACGCTCTACCAACTGAGCTAACAAGGA 1 chrXV:353939-354298 ( 16) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrXIV:104593-105054 ( 32) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrIX:174896-175203 ( 32) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrXII:962846-963237 ( 35) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXI:84022-84421 ( 37) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrX:424303-424723 ( 23) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrIV:519655-519898 ( 17) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrX:617688-618127 ( 62) TGACGCCTTAAACCACTCGGCCAAACTCCC 1 chrXII:605230-605637 ( 20) ACGAAGCTCTAACCACTGAGCTACACGAGC 1 chrXVI:689348-689866 ( 8) CTGTCGCCTTAACCACTCGGCCATAGTGCC 1 chrXIV:374650-375096 ( 46) CTGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrXVI:622350-622828 ( 63) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrXIII:504635-505159 ( 48) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXII:627892-628885 ( 45) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrVIII:358333-358776 ( 36) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVIII:237754-238081 ( 43) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVII:440635-440926 ( 48) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrVII:422892-423341 ( 26) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrII:36234-36557 ( 53) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrXVI:810582-810842 ( 14) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXI:74433-74786 ( 65) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrVII:730958-731369 ( 24) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrIII:127528-127881 ( 62) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXIII:572440-573436 ( 38) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrX:390937-391303 ( 16) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrIV:1175601-1176040 ( 59) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrXIII:480371-480932 ( 63) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrVI:226500-226965 ( 49) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIX:300008-300492 ( 71) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIV:1201544-1201965 ( 46) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIII:151153-151567 ( 17) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrVII:700205-701152 ( 47) TGACGCCTTAGACCACTCGGCCAGAGTACC 1 chrXIII:195952-196295 ( 68) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXII:92418-92725 ( 27) GCGAGAATCATACCACTAGACCACACGCCC 1 chrVIII:388728-389183 ( 61) GCGAGAATCATACCACTAGACCACACGCCC 1 chrI:138962-139344 ( 49) GCGAGAATCATACCACTAGACCACACGCCC 1 chrIV:437553-438068 ( 12) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXIII:372232-372761 ( 43) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXI:307918-308455 ( 52) AGATGCCATAACCGACTAGACCACGAAACC 1 chrX:378138-378552 ( 65) AGATGCCATAACCGACTAGACCACGAAACC 1 chrVII:823347-823689 ( 14) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXIII:808130-808522 ( 12) CGAAAGTGATAACCACTACACTATAGGACC 1 chrXII:448478-448988 ( 9) CGAAAGTGATAACCACTACACTATAGGACC 1 chrIII:168089-168556 ( 71) CGAAAGTGATAACCACTACACTATAGGACC 1 chrII:350588-351043 ( 62) CGAAAGTGATAACCACTACACTATAAAACC 1 chrXIII:837734-838209 ( 7) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrXIII:168682-168984 ( 12) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrX:542795-543260 ( 38) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:210445-210869 ( 71) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:167246-167691 ( 19) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrII:326474-327162 ( 68) CGACGTCTTGAACCACTGGACCATTGGACC 1 chrXV:110855-111189 ( 32) GTGGGATGATAACCACTACACTAACCGCCC 1 chrVII:1004042-1004403 ( 44) TGCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrVII:661537-661934 ( 64) TGCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrXI:490767-491204 ( 33) CAGACGCCGTGACCATTGGGCCACGAGGAA 1 chrXVI:860163-860653 ( 21) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrIV:83355-83792 ( 25) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXII:426832-427468 ( 32) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrXI:513222-513514 ( 56) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrVII:544417-544846 ( 38) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrIX:336091-336685 ( 53) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrIX:324199-324548 ( 22) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrII:405682-406336 ( 1) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrXIII:131655-132073 ( 53) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrXI:162438-162680 ( 20) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrX:374236-374821 ( 70) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrVII:736199-736519 ( 31) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrXVI:775679-776014 ( 11) TCTGCTGCGCTACCACTGCGCCATACGAGC 1 chrIV:1075326-1075753 ( 26) GCAACGTGATAGCCGCTACACTATTGGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGVVSSCTYWAMCMACTRRGCYAHVVVVSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 37204 bayes= 8.30332 E= 3.7e-196 -153 128 -4 -36 -194 6 144 -62 -1 24 85 -136 -1 47 54 -107 -107 132 96 -1287 -107 111 111 -353 -194 164 -104 -44 -253 -15 -26 99 -107 96 -126 38 33 -226 -385 86 72 -126 6 -53 56 132 -153 -1287 -1287 238 -1287 -1287 -1 144 -53 -294 162 -1287 -185 -1287 -1287 203 -1287 -53 -1287 -1287 -1287 170 33 -39 67 -94 -7 24 132 -1287 -1 -1287 185 -1287 -1287 238 -1287 -1287 -1287 161 -1287 42 170 -1287 -1287 -1287 28 80 -385 -14 11 67 47 -172 -7 47 74 -136 47 15 67 -253 33 6 91 -253 -172 101 128 -253 -136 208 -153 -1287 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGVVSSCTYWAMCMACTRRGCYAHVVVVSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 75 E= 3.7e-196 0.106667 0.466667 0.186667 0.240000 0.080000 0.200000 0.520000 0.200000 0.306667 0.226667 0.346667 0.120000 0.306667 0.266667 0.280000 0.146667 0.146667 0.480000 0.373333 0.000000 0.146667 0.413333 0.413333 0.026667 0.080000 0.600000 0.093333 0.226667 0.053333 0.173333 0.160000 0.613333 0.146667 0.373333 0.080000 0.400000 0.386667 0.040000 0.013333 0.560000 0.506667 0.080000 0.200000 0.213333 0.453333 0.480000 0.066667 0.000000 0.000000 1.000000 0.000000 0.000000 0.306667 0.520000 0.133333 0.040000 0.946667 0.000000 0.053333 0.000000 0.000000 0.786667 0.000000 0.213333 0.000000 0.000000 0.000000 1.000000 0.386667 0.146667 0.306667 0.160000 0.293333 0.226667 0.480000 0.000000 0.306667 0.000000 0.693333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.586667 0.000000 0.413333 1.000000 0.000000 0.000000 0.000000 0.373333 0.333333 0.013333 0.280000 0.333333 0.306667 0.266667 0.093333 0.293333 0.266667 0.320000 0.120000 0.426667 0.213333 0.306667 0.053333 0.386667 0.200000 0.360000 0.053333 0.093333 0.386667 0.466667 0.053333 0.120000 0.813333 0.066667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGVVSSCTYWAMCMACTRRGCYAHVVVVSC MEME-2 regular expression -------------------------------------------------------------------------------- [CT][GCT][GAC][AGC][CG][CG][CT]T[TC][TA][ATG][CA]C[CA]A[CT]T[AG][GAC][GA]C[CT]A[ACT][ACG][GAC][AGC][AGC][GC]C -------------------------------------------------------------------------------- Time 506.61 secs. ******************************************************************************** ******************************************************************************** MOTIF YGACASMTRCRRGATTCGAACYYGCGCRG MEME-3 width = 29 sites = 14 llr = 388 E-value = 2.7e-054 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGACASMTRCRRGATTCGAACYYGCGCRG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::7262414354:8::::aa::1::::4: pos.-specific C 5::5:36::7::::2:9:::a65:7:a:: probability G :a1125:16:56a2:::a:::::7:a:67 matrix T 5:111::7::::::8a1::::4433:::3 bits 2.4 * * * * ** 2.1 * * * * ** 1.9 * * * * ** 1.7 * * ****** ** Relative 1.4 * * * ****** **** * Entropy 1.2 * * ** *********** ****** (40.0 bits) 1.0 ** * ************** ****** 0.7 *** ************************ 0.5 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel CGACAGCTGCAGGATTCGAACCCGCGCGG consensus T AGCA AAGA GC TTTT AT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGACASMTRCRRGATTCGAACYYGCGCRG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXII:167618-168254 + 58 4.70e-16 GAAAAAATAA CGACAACTGCAGGACTCGAACCTGCGCGG GCAAAGCCCA chrIV:437553-438068 - 65 4.70e-16 AAAATGA CGACAACTGCAGGACTCGAACCTGCGCGG GCAAAGCCCA chrII:226973-227366 - 9 4.70e-16 CAAAAAATAA CGACAACTGCAGGACTCGAACCTGCGCGG GCAAAGCC chrIV:519655-519898 - 72 5.18e-14 . TGAAGGATGCGAGGTTCGAACTCGCGCGG ACAACCGTCC chrII:347428-347950 - 19 5.18e-14 AAAATATTAC TGAAGGATGCGAGGTTCGAACTCGCGCGG ACAACCGTCC chrII:9466-9869 - 21 5.18e-14 AAAAAAATAC TGAAGGATGCGAGGTTCGAACTCGCGCGG ACAACCGTCC chrXVI:689348-689866 - 61 5.76e-14 AAAAATAATA CGACACCAGCAGGATTTGAACCAGCGCGG GCAGAGCCCA chrIII:227774-228224 - 65 5.76e-14 AATTAAA CGACACCAGCAGGATTTGAACCAGCGCGG GCAGAGCCCA chrXV:274477-275005 - 54 1.33e-13 AAAAGAAATG CGTCACAGACAGGATTCGAACCTGCGCAG GTAAAACCCA chrVI:191280-191756 + 45 1.33e-13 AAAAGAAATG CGTCACAGACAGGATTCGAACCTGCGCAG GTAAAACCCA chrXII:732012-732313 - 50 5.52e-13 CAAAAAATAA TGAGAGCTAAGGGATTCGAACCCTTGCAT CCGAAGATAT chrXII:592368-592712 + 29 5.52e-13 CAAAAAATAA TGAGAGCTAAGGGATTCGAACCCTTGCAT CCGAAGATAT chrVII:857124-857590 + 71 1.29e-11 AAAAAATTAT TGGTTGCTAAGAGATTCGAACTCTTGCAT C chrIII:90788-91110 - 45 1.29e-11 AAAAAAATAA TGGTTGCTAAGAGATTCGAACTCTTGCAT CTTACGATAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGACASMTRCRRGATTCGAACYYGCGCRG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:167618-168254 4.7e-16 57_[+3]_14 chrIV:437553-438068 4.7e-16 64_[-3]_7 chrII:226973-227366 4.7e-16 8_[-3]_63 chrIV:519655-519898 5.2e-14 71_[-3] chrII:347428-347950 5.2e-14 18_[-3]_53 chrII:9466-9869 5.2e-14 20_[-3]_51 chrXVI:689348-689866 5.8e-14 60_[-3]_11 chrIII:227774-228224 5.8e-14 64_[-3]_7 chrXV:274477-275005 1.3e-13 53_[-3]_18 chrVI:191280-191756 1.3e-13 44_[+3]_27 chrXII:732012-732313 5.5e-13 49_[-3]_22 chrXII:592368-592712 5.5e-13 28_[+3]_43 chrVII:857124-857590 1.3e-11 70_[+3]_1 chrIII:90788-91110 1.3e-11 44_[-3]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGACASMTRCRRGATTCGAACYYGCGCRG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGACASMTRCRRGATTCGAACYYGCGCRG width=29 seqs=14 chrXII:167618-168254 ( 58) CGACAACTGCAGGACTCGAACCTGCGCGG 1 chrIV:437553-438068 ( 65) CGACAACTGCAGGACTCGAACCTGCGCGG 1 chrII:226973-227366 ( 9) CGACAACTGCAGGACTCGAACCTGCGCGG 1 chrIV:519655-519898 ( 72) TGAAGGATGCGAGGTTCGAACTCGCGCGG 1 chrII:347428-347950 ( 19) TGAAGGATGCGAGGTTCGAACTCGCGCGG 1 chrII:9466-9869 ( 21) TGAAGGATGCGAGGTTCGAACTCGCGCGG 1 chrXVI:689348-689866 ( 61) CGACACCAGCAGGATTTGAACCAGCGCGG 1 chrIII:227774-228224 ( 65) CGACACCAGCAGGATTTGAACCAGCGCGG 1 chrXV:274477-275005 ( 54) CGTCACAGACAGGATTCGAACCTGCGCAG 1 chrVI:191280-191756 ( 45) CGTCACAGACAGGATTCGAACCTGCGCAG 1 chrXII:732012-732313 ( 50) TGAGAGCTAAGGGATTCGAACCCTTGCAT 1 chrXII:592368-592712 ( 29) TGAGAGCTAAGGGATTCGAACCCTTGCAT 1 chrVII:857124-857590 ( 71) TGGTTGCTAAGAGATTCGAACTCTTGCAT 1 chrIII:90788-91110 ( 45) TGGTTGCTAAGAGATTCGAACTCTTGCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGACASMTRCRRGATTCGAACYYGCGCRG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 37728 bayes= 10.3744 E= 2.7e-054 -1045 138 -1045 70 -1045 -1045 238 -1045 121 -1045 -43 -111 -52 138 -43 -111 106 -1045 16 -111 -52 57 138 -1045 21 174 -1045 -1045 -111 -1045 -43 121 48 -1045 157 -1045 -11 189 -1045 -1045 70 -1045 138 -1045 21 -1045 174 -1045 -1045 -1045 238 -1045 135 -1045 16 -1045 -1045 16 -1045 135 -1045 -1045 -1045 170 -1045 216 -1045 -111 -1045 -1045 238 -1045 170 -1045 -1045 -1045 170 -1045 -1045 -1045 -1045 238 -1045 -1045 -1045 174 -1045 21 -111 138 -1045 21 -1045 -1045 189 -11 -1045 189 -1045 -11 -1045 -1045 238 -1045 -1045 238 -1045 -1045 48 -1045 157 -1045 -1045 -1045 189 -11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGACASMTRCRRGATTCGAACYYGCGCRG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 14 E= 2.7e-054 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.714286 0.000000 0.142857 0.142857 0.214286 0.500000 0.142857 0.142857 0.642857 0.000000 0.214286 0.142857 0.214286 0.285714 0.500000 0.000000 0.357143 0.642857 0.000000 0.000000 0.142857 0.000000 0.142857 0.714286 0.428571 0.000000 0.571429 0.000000 0.285714 0.714286 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.357143 0.000000 0.642857 0.000000 0.000000 0.000000 1.000000 0.000000 0.785714 0.000000 0.214286 0.000000 0.000000 0.214286 0.000000 0.785714 0.000000 0.000000 0.000000 1.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.642857 0.000000 0.357143 0.142857 0.500000 0.000000 0.357143 0.000000 0.000000 0.714286 0.285714 0.000000 0.714286 0.000000 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.000000 0.000000 0.714286 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGACASMTRCRRGATTCGAACYYGCGCRG MEME-3 regular expression -------------------------------------------------------------------------------- [CT]GA[CA][AG][GCA][CA]T[GA][CA][AG][GA]G[AG][TC]TCGAAC[CT][CT][GT][CT]GC[GA][GT] -------------------------------------------------------------------------------- Time 739.09 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:32858-33224 2.62e-01 100 chrI:71750-73607 1.77e-01 100 chrI:81908-82267 1.32e-01 100 chrI:138962-139344 4.27e-06 48_[-2(1.53e-08)]_22 chrI:142166-143490 2.36e-01 100 chrI:166179-166566 6.77e-01 100 chrII:9466-9869 3.49e-11 20_[-3(5.18e-14)]_51 chrII:23742-24584 3.11e-01 100 chrII:36234-36557 1.62e-05 52_[-2(1.33e-09)]_18 chrII:44948-45322 3.35e-01 100 chrII:59816-61178 9.00e-02 38_[-2(7.49e-05)]_32 chrII:88939-90161 9.71e-02 100 chrII:165132-165422 2.39e-01 100 chrII:167923-168187 5.71e-01 100 chrII:181314-181609 9.64e-01 100 chrII:197292-197835 1.15e-09 17_[-1(8.57e-13)]_53 chrII:215927-218251 4.32e-01 100 chrII:226973-227366 1.42e-12 8_[-3(4.70e-16)]_63 chrII:255093-255681 1.06e-01 100 chrII:266214-266707 4.69e-07 3_[-1(1.59e-10)]_67 chrII:326474-327162 3.26e-13 30_[+1(8.14e-11)]_7_[+2(6.54e-08)]_\ 3 chrII:332139-332933 4.87e-01 100 chrII:347428-347950 3.49e-11 18_[-3(5.18e-14)]_53 chrII:350588-351043 2.67e-04 61_[-2(5.46e-08)]_9 chrII:405682-406336 6.21e-10 [-2(1.42e-07)]_5_[-1(1.62e-09)]_35 chrII:415529-416139 8.65e-01 100 chrII:477102-477767 6.16e-03 48_[-2(2.70e-05)]_22 chrII:592918-593273 8.56e-01 100 chrII:604137-606065 4.30e-01 100 chrII:644957-645413 1.73e-11 66_[-1(1.19e-12)]_4 chrIII:79-1257 4.47e-01 100 chrIII:90788-91110 3.15e-08 44_[-3(1.29e-11)]_27 chrIII:123386-123794 1.77e-09 43_[+1(3.53e-12)]_27 chrIII:127528-127881 2.85e-05 61_[-2(2.82e-09)]_9 chrIII:133438-133997 4.80e-01 100 chrIII:137769-138978 1.97e-01 100 chrIII:142666-142973 3.53e-01 100 chrIII:149740-150170 9.91e-07 49_[-1(3.71e-08)]_21 chrIII:151153-151567 6.07e-06 16_[+2(5.72e-09)]_54 chrIII:163499-163848 3.03e-01 100 chrIII:168089-168556 5.62e-13 35_[+1(5.73e-11)]_5_[+2(2.81e-08)] chrIII:177176-178160 4.86e-01 100 chrIII:178368-178785 7.72e-01 100 chrIII:227774-228224 4.46e-11 64_[-3(5.76e-14)]_7 chrIII:295353-295885 2.86e-01 100 chrIII:308570-308950 5.58e-02 100 chrIV:45237-45911 7.27e-01 100 chrIV:83355-83792 8.16e-12 24_[-2(1.10e-07)]_4_[-1(2.14e-11)]_\ 12 chrIV:117174-118228 7.38e-01 100 chrIV:125293-126275 6.74e-01 100 chrIV:129940-130949 6.17e-01 100 chrIV:217159-218067 7.74e-01 100 chrIV:221389-222336 5.86e-01 100 chrIV:229545-230501 4.00e-01 100 chrIV:308031-308619 7.65e-02 100 chrIV:321699-321945 9.63e-01 100 chrIV:340970-341736 5.66e-01 100 chrIV:355678-356872 7.38e-01 100 chrIV:358049-358495 9.78e-01 100 chrIV:359330-359764 1.42e-01 100 chrIV:410234-410447 9.14e-01 100 chrIV:411278-411621 1.02e-01 100 chrIV:416963-417485 8.91e-01 100 chrIV:434105-435058 3.22e-01 100 chrIV:437553-438068 1.27e-17 11_[-2(1.70e-08)]_23_[-3(4.70e-16)]_\ 7 chrIV:464230-469155 1.69e-01 100 chrIV:488426-488985 8.33e-01 100 chrIV:490997-491285 9.53e-01 100 chrIV:519655-519898 5.58e-18 16_[-2(3.38e-10)]_25_[-3(5.18e-14)] chrIV:520721-521162 7.45e-02 100 chrIV:539011-539430 1.69e-01 100 chrIV:541237-541901 9.03e-01 100 chrIV:555772-556459 5.87e-01 100 chrIV:568529-569611 9.99e-01 100 chrIV:578877-580792 4.25e-01 100 chrIV:591637-591971 1.19e-01 100 chrIV:601187-602276 1.59e-01 100 chrIV:619699-620219 3.35e-07 66_[+1(4.91e-10)]_4 chrIV:667707-668572 9.96e-01 100 chrIV:802600-802838 4.24e-08 68_[+1(5.73e-11)]_2 chrIV:808360-810178 3.12e-01 100 chrIV:884292-886532 9.35e-01 100 chrIV:945805-946628 7.05e-01 100 chrIV:992693-993398 5.05e-01 100 chrIV:1016960-1017516 4.89e-12 25_[+1(5.15e-13)]_45 chrIV:1075326-1075753 7.93e-03 25_[+2(3.65e-06)]_45 chrIV:1094992-1095680 4.27e-01 100 chrIV:1150445-1151162 2.48e-01 100 chrIV:1164841-1165187 5.57e-01 100 chrIV:1175601-1176040 1.80e-05 58_[-2(3.59e-09)]_12 chrIV:1201544-1201965 2.94e-05 45_[-2(5.72e-09)]_25 chrIV:1236491-1238010 1.18e-01 100 chrIV:1277730-1279926 1.56e-01 100 chrIV:1300805-1301314 5.80e-01 100 chrIV:1305405-1305786 6.30e-01 100 chrIV:1351918-1352211 4.83e-01 100 chrIV:1352386-1353049 9.96e-01 100 chrIV:1355740-1355992 8.28e-01 100 chrIV:1359434-1361013 9.13e-01 100 chrIV:1400909-1401113 4.61e-01 100 chrIV:1401289-1401930 3.85e-01 100 chrIV:1450634-1451614 5.01e-01 100 chrIV:1461369-1461848 9.63e-01 100 chrIV:1490127-1490403 6.03e-01 100 chrIX:68072-69551 8.18e-01 100 chrIX:99671-100015 3.94e-01 100 chrIX:174896-175203 1.29e-14 31_[-2(2.17e-10)]_6_[-1(1.59e-10)]_\ 3 chrIX:183283-183676 4.80e-18 17_[+1(8.57e-13)]_7_[+2(2.21e-12)]_\ 16 chrIX:197319-198150 5.58e-01 100 chrIX:210658-211338 1.58e-02 100 chrIX:248619-249463 4.92e-01 100 chrIX:254252-254537 7.86e-01 100 chrIX:257381-257980 8.40e-01 100 chrIX:300008-300492 2.22e-13 34_[+1(8.37e-12)]_6_[+2(5.72e-09)] chrIX:316042-316563 9.10e-01 100 chrIX:324199-324548 2.64e-04 21_[+2(1.42e-07)]_49 chrIX:325532-326074 6.76e-07 30_[-1(1.59e-10)]_40 chrIX:336091-336685 6.21e-10 17_[+1(1.62e-09)]_5_[+2(1.42e-07)]_\ 18 chrIX:370255-370571 2.03e-01 100 chrIX:390110-390884 7.38e-03 100 chrV:6212-6370 8.00e-01 100 chrV:51801-53189 8.64e-01 100 chrV:53543-54242 8.39e-01 100 chrV:61081-62120 3.33e-01 100 chrV:69113-69332 1.24e-01 100 chrV:78075-79441 1.64e-02 5_[-2(3.17e-05)]_65 chrV:85153-86783 6.91e-01 100 chrV:99925-100276 2.99e-01 100 chrV:117593-118295 6.90e-01 100 chrV:130832-131364 7.84e-08 40_[+1(1.02e-10)]_30 chrV:135227-136054 2.13e-01 100 chrV:138479-139972 5.50e-01 100 chrV:140148-140887 7.67e-01 100 chrV:141094-141320 8.63e-01 100 chrV:176803-177440 1.73e-11 62_[-1(1.19e-12)]_8 chrV:249797-250703 9.95e-01 100 chrV:270409-270632 1.00e+00 100 chrV:288197-289057 8.42e-01 100 chrV:298865-301579 4.73e-01 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100 chrXVI:810582-810842 1.50e-12 13_[-2(2.82e-09)]_7_[-1(1.92e-09)]_\ 20 chrXVI:819354-820203 8.58e-01 100 chrXVI:860163-860653 8.16e-12 20_[-2(1.10e-07)]_4_[-1(2.14e-11)]_\ 16 chrXVI:880221-880565 4.71e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************