******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--NOT3/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:81907-82297 1.0000 100 chrI:138853-139356 1.0000 100 chrI:166174-166821 1.0000 100 chrII:6817-7086 1.0000 100 chrII:9460-9981 1.0000 100 chrII:36223-37235 1.0000 100 chrII:44948-45365 1.0000 100 chrII:59515-61243 1.0000 100 chrII:89636-90014 1.0000 100 chrII:165108-165387 1.0000 100 chrII:167879-168194 1.0000 100 chrII:181292-181695 1.0000 100 chrII:197119-197842 1.0000 100 chrII:198528-199939 1.0000 100 chrII:226974-227341 1.0000 100 chrII:266170-266781 1.0000 100 chrII:326506-327233 1.0000 100 chrII:331786-333086 1.0000 100 chrII:347393-347979 1.0000 100 chrII:350390-351044 1.0000 100 chrII:405656-406213 1.0000 100 chrII:415503-415933 1.0000 100 chrII:477027-477761 1.0000 100 chrII:592834-593293 1.0000 100 chrII:604106-606966 1.0000 100 chrII:644957-645439 1.0000 100 chrIII:145-1524 1.0000 100 chrIII:13956-15686 1.0000 100 chrIII:90784-91104 1.0000 100 chrIII:123414-123802 1.0000 100 chrIII:127502-127880 1.0000 100 chrIII:142301-143347 1.0000 100 chrIII:149720-150256 1.0000 100 chrIII:150643-151607 1.0000 100 chrIII:162536-163900 1.0000 100 chrIII:168115-168554 1.0000 100 chrIII:177192-178765 1.0000 100 chrIII:227713-228206 1.0000 100 chrIII:295362-296335 1.0000 100 chrIII:308641-308973 1.0000 100 chrIV:83325-83806 1.0000 100 chrIV:117144-118225 1.0000 100 chrIV:129186-131254 1.0000 100 chrIV:217050-218083 1.0000 100 chrIV:221648-222524 1.0000 100 chrIV:229287-230399 1.0000 100 chrIV:261914-262448 1.0000 100 chrIV:308011-309483 1.0000 100 chrIV:321626-321947 1.0000 100 chrIV:340532-341684 1.0000 100 chrIV:358015-358420 1.0000 100 chrIV:359106-359808 1.0000 100 chrIV:410200-410451 1.0000 100 chrIV:411236-411683 1.0000 100 chrIV:434042-435116 1.0000 100 chrIV:437529-438292 1.0000 100 chrIV:488488-488989 1.0000 100 chrIV:489660-491261 1.0000 100 chrIV:519654-520504 1.0000 100 chrIV:520695-521111 1.0000 100 chrIV:538880-539248 1.0000 100 chrIV:568384-569530 1.0000 100 chrIV:578964-580889 1.0000 100 chrIV:619553-620279 1.0000 100 chrIV:667794-668614 1.0000 100 chrIV:757473-758440 1.0000 100 chrIV:802589-802835 1.0000 100 chrIV:835901-836272 1.0000 100 chrIV:884250-884635 1.0000 100 chrIV:945620-946634 1.0000 100 chrIV:992686-993206 1.0000 100 chrIV:1013423-1013965 1.0000 100 chrIV:1016955-1017656 1.0000 100 chrIV:1075319-1075771 1.0000 100 chrIV:1094890-1095729 1.0000 100 chrIV:1150690-1151222 1.0000 100 chrIV:1175574-1176907 1.0000 100 chrIV:1200766-1201971 1.0000 100 chrIV:1236462-1237993 1.0000 100 chrIV:1300705-1301344 1.0000 100 chrIV:1304966-1305849 1.0000 100 chrIV:1352016-1353293 1.0000 100 chrIV:1353719-1356044 1.0000 100 chrIV:1359259-1360813 1.0000 100 chrIV:1400896-1401908 1.0000 100 chrIV:1450604-1451264 1.0000 100 chrIV:1461129-1461834 1.0000 100 chrIX:67705-69542 1.0000 100 chrIX:99629-100052 1.0000 100 chrIX:109803-110354 1.0000 100 chrIX:110552-111577 1.0000 100 chrIX:174716-175391 1.0000 100 chrIX:182722-184290 1.0000 100 chrIX:197250-198070 1.0000 100 chrIX:210681-210931 1.0000 100 chrIX:248564-249002 1.0000 100 chrIX:254192-254562 1.0000 100 chrIX:257364-258056 1.0000 100 chrIX:299969-300514 1.0000 100 chrIX:315621-317629 1.0000 100 chrIX:324113-324723 1.0000 100 chrIX:325438-326074 1.0000 100 chrIX:336139-336685 1.0000 100 chrIX:370250-370586 1.0000 100 chrV:6212-6753 1.0000 100 chrV:53497-54964 1.0000 100 chrV:61093-62139 1.0000 100 chrV:78096-79291 1.0000 100 chrV:85113-87286 1.0000 100 chrV:99809-100279 1.0000 100 chrV:117171-118294 1.0000 100 chrV:130877-131387 1.0000 100 chrV:135161-136145 1.0000 100 chrV:138486-140923 1.0000 100 chrV:176310-177451 1.0000 100 chrV:249779-250748 1.0000 100 chrV:270374-270659 1.0000 100 chrV:288014-288809 1.0000 100 chrV:305809-306905 1.0000 100 chrV:311778-312295 1.0000 100 chrV:354793-355290 1.0000 100 chrV:361807-362484 1.0000 100 chrV:396119-397821 1.0000 100 chrV:423052-423607 1.0000 100 chrV:431039-432036 1.0000 100 chrV:434414-435141 1.0000 100 chrV:435395-435947 1.0000 100 chrV:438383-438925 1.0000 100 chrV:441801-442673 1.0000 100 chrV:443055-443341 1.0000 100 chrV:469041-469732 1.0000 100 chrV:480382-482291 1.0000 100 chrV:485564-487642 1.0000 100 chrV:551006-551901 1.0000 100 chrVI:4530-4758 1.0000 100 chrVI:64170-65415 1.0000 100 chrVI:95460-95904 1.0000 100 chrVI:101384-101816 1.0000 100 chrVI:136630-137813 1.0000 100 chrVI:157901-158585 1.0000 100 chrVI:162001-162395 1.0000 100 chrVI:166785-167718 1.0000 100 chrVI:180621-181261 1.0000 100 chrVI:191127-191754 1.0000 100 chrVI:210423-210929 1.0000 100 chrVI:221340-222125 1.0000 100 chrVI:223383-224438 1.0000 100 chrVI:226528-227156 1.0000 100 chrVII:784-2155 1.0000 100 chrVII:110330-110788 1.0000 100 chrVII:115183-115747 1.0000 100 chrVII:121983-122694 1.0000 100 chrVII:148285-149609 1.0000 100 chrVII:185188-185917 1.0000 100 chrVII:205066-206115 1.0000 100 chrVII:254132-254670 1.0000 100 chrVII:277006-278228 1.0000 100 chrVII:287166-287896 1.0000 100 chrVII:310310-312871 1.0000 100 chrVII:319208-320095 1.0000 100 chrVII:328344-329234 1.0000 100 chrVII:364891-366669 1.0000 100 chrVII:371249-371479 1.0000 100 chrVII:405474-406197 1.0000 100 chrVII:412132-412595 1.0000 100 chrVII:422865-423560 1.0000 100 chrVII:437038-437904 1.0000 100 chrVII:438547-439794 1.0000 100 chrVII:440174-441350 1.0000 100 chrVII:480156-480668 1.0000 100 chrVII:531269-531806 1.0000 100 chrVII:533362-535199 1.0000 100 chrVII:541713-542162 1.0000 100 chrVII:544406-544883 1.0000 100 chrVII:555179-556695 1.0000 100 chrVII:648762-649359 1.0000 100 chrVII:661189-661950 1.0000 100 chrVII:700210-701154 1.0000 100 chrVII:706951-707187 1.0000 100 chrVII:726250-728250 1.0000 100 chrVII:730916-731408 1.0000 100 chrVII:736181-737744 1.0000 100 chrVII:738503-739310 1.0000 100 chrVII:773109-774595 1.0000 100 chrVII:779360-779744 1.0000 100 chrVII:788211-788736 1.0000 100 chrVII:794085-794558 1.0000 100 chrVII:823352-823690 1.0000 100 chrVII:828167-829013 1.0000 100 chrVII:845356-846043 1.0000 100 chrVII:856747-857019 1.0000 100 chrVII:857200-857674 1.0000 100 chrVII:876065-876967 1.0000 100 chrVII:878612-879014 1.0000 100 chrVII:930238-930441 1.0000 100 chrVII:930613-931162 1.0000 100 chrVII:1000385-1000587 1.0000 100 chrVII:1003988-1004406 1.0000 100 chrVIII:62610-63048 1.0000 100 chrVIII:74870-75889 1.0000 100 chrVIII:103449-104306 1.0000 100 chrVIII:115973-116298 1.0000 100 chrVIII:125882-127822 1.0000 100 chrVIII:132803-133364 1.0000 100 chrVIII:133601-134675 1.0000 100 chrVIII:145752-146776 1.0000 100 chrVIII:148989-149504 1.0000 100 chrVIII:175026-175736 1.0000 100 chrVIII:212110-212391 1.0000 100 chrVIII:237712-238084 1.0000 100 chrVIII:296736-297260 1.0000 100 chrVIII:307761-308366 1.0000 100 chrVIII:358309-358796 1.0000 100 chrVIII:358984-359228 1.0000 100 chrVIII:381531-383487 1.0000 100 chrVIII:388680-389229 1.0000 100 chrVIII:466972-467756 1.0000 100 chrVIII:475510-475908 1.0000 100 chrVIII:505823-506234 1.0000 100 chrVIII:555715-556367 1.0000 100 chrVIII:556952-557160 1.0000 100 chrX:58963-59433 1.0000 100 chrX:73348-76497 1.0000 100 chrX:90002-90452 1.0000 100 chrX:115405-116222 1.0000 100 chrX:157446-157917 1.0000 100 chrX:196509-197519 1.0000 100 chrX:204454-205032 1.0000 100 chrX:215636-217251 1.0000 100 chrX:233021-234625 1.0000 100 chrX:349094-349418 1.0000 100 chrX:354158-354843 1.0000 100 chrX:355196-355741 1.0000 100 chrX:374200-374892 1.0000 100 chrX:378080-378587 1.0000 100 chrX:390593-391384 1.0000 100 chrX:391833-392095 1.0000 100 chrX:396053-397186 1.0000 100 chrX:414731-416623 1.0000 100 chrX:422394-423256 1.0000 100 chrX:424285-424726 1.0000 100 chrX:517662-518150 1.0000 100 chrX:523756-524423 1.0000 100 chrX:531031-532305 1.0000 100 chrX:538524-538793 1.0000 100 chrX:540716-542234 1.0000 100 chrX:542749-543832 1.0000 100 chrX:607758-608345 1.0000 100 chrX:608579-609022 1.0000 100 chrX:617690-618180 1.0000 100 chrX:651204-651616 1.0000 100 chrX:702937-703660 1.0000 100 chrX:745020-745536 1.0000 100 chrXI:777-1099 1.0000 100 chrXI:46370-47075 1.0000 100 chrXI:67797-68033 1.0000 100 chrXI:74415-75037 1.0000 100 chrXI:84008-84429 1.0000 100 chrXI:108505-110145 1.0000 100 chrXI:140766-141388 1.0000 100 chrXI:141739-141934 1.0000 100 chrXI:142207-142588 1.0000 100 chrXI:158179-159595 1.0000 100 chrXI:162433-162759 1.0000 100 chrXI:202116-203174 1.0000 100 chrXI:219598-220118 1.0000 100 chrXI:301008-302080 1.0000 100 chrXI:302674-303239 1.0000 100 chrXI:307979-308534 1.0000 100 chrXI:312023-314014 1.0000 100 chrXI:379465-379927 1.0000 100 chrXI:382206-382457 1.0000 100 chrXI:430890-431646 1.0000 100 chrXI:457416-459010 1.0000 100 chrXI:490726-491214 1.0000 100 chrXI:513193-513512 1.0000 100 chrXI:517788-518070 1.0000 100 chrXI:578715-579335 1.0000 100 chrXI:617619-619400 1.0000 100 chrXII:5562-5808 1.0000 100 chrXII:48697-49227 1.0000 100 chrXII:64299-65314 1.0000 100 chrXII:92415-92714 1.0000 100 chrXII:167641-168288 1.0000 100 chrXII:214696-215063 1.0000 100 chrXII:241604-243452 1.0000 100 chrXII:261233-263969 1.0000 100 chrXII:275731-276434 1.0000 100 chrXII:282590-283821 1.0000 100 chrXII:366001-366556 1.0000 100 chrXII:367005-367174 1.0000 100 chrXII:370667-370878 1.0000 100 chrXII:374187-374768 1.0000 100 chrXII:424200-424444 1.0000 100 chrXII:426807-427667 1.0000 100 chrXII:448532-449365 1.0000 100 chrXII:459587-460173 1.0000 100 chrXII:460435-460732 1.0000 100 chrXII:498173-500164 1.0000 100 chrXII:521135-522405 1.0000 100 chrXII:592358-592716 1.0000 100 chrXII:605151-605650 1.0000 100 chrXII:628133-628646 1.0000 100 chrXII:636726-639915 1.0000 100 chrXII:656840-657213 1.0000 100 chrXII:673501-675121 1.0000 100 chrXII:712304-712736 1.0000 100 chrXII:713135-713693 1.0000 100 chrXII:732007-732286 1.0000 100 chrXII:734395-735593 1.0000 100 chrXII:780805-781905 1.0000 100 chrXII:784032-784786 1.0000 100 chrXII:793728-795287 1.0000 100 chrXII:795566-797392 1.0000 100 chrXII:811815-814930 1.0000 100 chrXII:818510-820281 1.0000 100 chrXII:875213-875770 1.0000 100 chrXII:897656-898807 1.0000 100 chrXII:921764-922583 1.0000 100 chrXII:932051-932509 1.0000 100 chrXII:962593-963339 1.0000 100 chrXII:975816-976104 1.0000 100 chrXII:1017564-1019509 1.0000 100 chrXII:1028183-1028567 1.0000 100 chrXII:1051629-1052219 1.0000 100 chrXIII:91503-92088 1.0000 100 chrXIII:131400-132126 1.0000 100 chrXIII:145726-146285 1.0000 100 chrXIII:168259-169020 1.0000 100 chrXIII:195930-196301 1.0000 100 chrXIII:224072-224706 1.0000 100 chrXIII:225247-225750 1.0000 100 chrXIII:259018-259527 1.0000 100 chrXIII:288080-291049 1.0000 100 chrXIII:296226-298908 1.0000 100 chrXIII:320937-321631 1.0000 100 chrXIII:352013-352497 1.0000 100 chrXIII:362942-363827 1.0000 100 chrXIII:372174-372769 1.0000 100 chrXIII:378869-379637 1.0000 100 chrXIII:420333-420852 1.0000 100 chrXIII:463432-463880 1.0000 100 chrXIII:480408-480906 1.0000 100 chrXIII:504607-505231 1.0000 100 chrXIII:513659-513951 1.0000 100 chrXIII:550990-551813 1.0000 100 chrXIII:572424-573233 1.0000 100 chrXIII:586321-587421 1.0000 100 chrXIII:650806-651850 1.0000 100 chrXIII:652091-652863 1.0000 100 chrXIII:731568-733470 1.0000 100 chrXIII:747671-748563 1.0000 100 chrXIII:753050-755160 1.0000 100 chrXIII:761761-763092 1.0000 100 chrXIII:768140-768422 1.0000 100 chrXIII:808110-808524 1.0000 100 chrXIII:837208-838462 1.0000 100 chrXIV:61928-64534 1.0000 100 chrXIV:96015-96455 1.0000 100 chrXIV:102583-103732 1.0000 100 chrXIV:104599-105229 1.0000 100 chrXIV:241383-241813 1.0000 100 chrXIV:330447-331092 1.0000 100 chrXIV:374638-375080 1.0000 100 chrXIV:375416-376025 1.0000 100 chrXIV:415136-416087 1.0000 100 chrXIV:442873-444236 1.0000 100 chrXIV:493898-495816 1.0000 100 chrXIV:498969-500668 1.0000 100 chrXIV:546541-547464 1.0000 100 chrXIV:560195-560788 1.0000 100 chrXIV:568055-568489 1.0000 100 chrXIV:569588-570046 1.0000 100 chrXIV:585520-586509 1.0000 100 chrXIV:602056-602528 1.0000 100 chrXIV:631514-632011 1.0000 100 chrXIV:632498-632909 1.0000 100 chrXIV:715819-716621 1.0000 100 chrXIV:725031-726358 1.0000 100 chrXIV:783761-784313 1.0000 100 chrXV:79726-80150 1.0000 100 chrXV:80350-81146 1.0000 100 chrXV:92718-94807 1.0000 100 chrXV:109577-110020 1.0000 100 chrXV:110871-111268 1.0000 100 chrXV:113215-113881 1.0000 100 chrXV:161123-161571 1.0000 100 chrXV:167951-168519 1.0000 100 chrXV:216221-216709 1.0000 100 chrXV:226452-226883 1.0000 100 chrXV:227830-228576 1.0000 100 chrXV:253831-254079 1.0000 100 chrXV:274474-275020 1.0000 100 chrXV:281697-282762 1.0000 100 chrXV:287139-287470 1.0000 100 chrXV:287666-288386 1.0000 100 chrXV:300872-301634 1.0000 100 chrXV:340105-340771 1.0000 100 chrXV:353843-354807 1.0000 100 chrXV:438406-440226 1.0000 100 chrXV:464274-465135 1.0000 100 chrXV:487452-487732 1.0000 100 chrXV:504844-505522 1.0000 100 chrXV:571384-572313 1.0000 100 chrXV:594011-594645 1.0000 100 chrXV:663506-664810 1.0000 100 chrXV:678230-679162 1.0000 100 chrXV:710070-710862 1.0000 100 chrXV:779700-780732 1.0000 100 chrXV:854002-854796 1.0000 100 chrXV:866533-867007 1.0000 100 chrXV:968131-968417 1.0000 100 chrXV:976382-976714 1.0000 100 chrXV:978816-979167 1.0000 100 chrXV:979714-981338 1.0000 100 chrXV:1003957-1006717 1.0000 100 chrXV:1025270-1026089 1.0000 100 chrXV:1027836-1029566 1.0000 100 chrXVI:55806-56345 1.0000 100 chrXVI:76208-76768 1.0000 100 chrXVI:172875-174073 1.0000 100 chrXVI:188161-189225 1.0000 100 chrXVI:208583-211450 1.0000 100 chrXVI:281467-282782 1.0000 100 chrXVI:302472-304976 1.0000 100 chrXVI:338418-339313 1.0000 100 chrXVI:378658-379035 1.0000 100 chrXVI:406161-408259 1.0000 100 chrXVI:434701-436225 1.0000 100 chrXVI:520068-520559 1.0000 100 chrXVI:532181-533340 1.0000 100 chrXVI:559953-560472 1.0000 100 chrXVI:570597-572514 1.0000 100 chrXVI:581835-582479 1.0000 100 chrXVI:622194-622856 1.0000 100 chrXVI:654120-654824 1.0000 100 chrXVI:688737-689862 1.0000 100 chrXVI:699820-700677 1.0000 100 chrXVI:731645-732370 1.0000 100 chrXVI:744079-744596 1.0000 100 chrXVI:768970-769482 1.0000 100 chrXVI:775636-776111 1.0000 100 chrXVI:794420-796259 1.0000 100 chrXVI:810582-811109 1.0000 100 chrXVI:819200-819932 1.0000 100 chrXVI:860132-860679 1.0000 100 chrXVI:878939-880563 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--NOT3/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--NOT3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--NOT3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 447 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 44700 N= 447 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.310 C 0.190 G 0.190 T 0.310 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/YJM789--NOT3/background): A 0.317 C 0.183 G 0.183 T 0.317 ******************************************************************************** ******************************************************************************** MOTIF KMBSGGRATCGAACCSVKGACCTYMB MEME-1 width = 26 sites = 42 llr = 871 E-value = 1.6e-163 ******************************************************************************** -------------------------------------------------------------------------------- Motif KMBSGGRATCGAACCSVKGACCTYMB MEME-1 Description -------------------------------------------------------------------------------- Simplified A 24::1:45:::aa:1:4:17:1:131 pos.-specific C :645:::1:9:::a853:::773554 probability G 5:358a51::a::::54681:2:::2 matrix T 3:3:1::2a1::::1::4:13:7423 bits 2.5 * * 2.2 * * * 2.0 * * * 1.7 * **** * Relative 1.5 * * ****** * * Entropy 1.2 *** ******** * * (29.9 bits) 1.0 *** ******** * *** 0.7 ****** ******** ******* 0.5 ******* ***************** 0.2 ************************** 0.0 -------------------------- Multilevel GCCCGGGATCGAACCCAGGACCTCCC consensus TATG AT GGT T CTAT sequence G C TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KMBSGGRATCGAACCSVKGACCTYMB MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chrIII:123414-123802 + 26 1.44e-15 TGTGGGGCGA GCCGGGACTCGAACCCGGGACCTCCC GCACCCTAAG chrXVI:860132-860679 - 62 1.34e-12 ATCTGCGCAA GCCCGGAATCGAACCGGGGGCCCAAC GATGGCAACG chrXV:281697-282762 - 23 1.34e-12 AAATGCGCAA GCCCGGAATCGAACCGGGGGCCCAAC GATGGCAACG chrXV:226452-226883 + 1 1.34e-12 . GCCCGGAATCGAACCGGGGGCCCAAC GATGGCAACG chrVII:845356-846043 - 38 1.34e-12 CATTGCGCAA GCCCGGAATCGAACCGGGGGCCCAAC GATGGCAACG chrIV:83325-83806 - 71 1.34e-12 GCAA GCCCGGAATCGAACCGGGGGCCCAAC GATGGCAACG chrXVI:819200-819932 - 54 4.10e-12 AAATGGTCTC TAGCGGGATCGAACCGCTGATCCCCG CGTTATTAGC chrV:443055-443341 + 61 4.10e-12 ATATGGTCTC TAGCGGGATCGAACCGCTGATCCCCG CGTTATTAGC chrXII:214696-215063 + 61 1.64e-11 AAATGGACGC AACCGGAATCGAACCGATGACCTCTT CCTTGCAAGG chrV:311778-312295 + 44 1.64e-11 CATTGGACGC AACCGGAATCGAACCGATGACCTCTT CCTTGCAAGG chrXIII:195930-196301 + 10 2.08e-11 AAGGGGCGA GCTGGGAATTGAACCCAGGGCCTCTC GCATGCTTTG chrXIII:420333-420852 + 53 3.29e-11 AAATGATTTC GCCCAGGATCGAACTGGGGACGTTCT GCGTGTTAAG chrXIII:372174-372769 + 31 3.29e-11 AAATGATTTC GCCCAGGATCGAACTGGGGACGTTCT GCGTGTTAAG chrXI:379465-379927 - 75 3.29e-11 . GCCCAGGATCGAACTGGGGACGTTCT GCGTGTTAAG chrVII:823352-823690 - 52 3.29e-11 AAATGATTTC GCCCAGGATCGAACTGGGGACGTTCT GCGTGTTAAG chrIII:168115-168554 + 24 8.72e-11 AAAAGGTCCT ACCCGGATTCGAACCGGGGTTGTCCG GATCAAAACC chrIX:197250-198070 - 21 1.19e-10 TAACTCCGAA GCGGGGAGTCGAACCCCGGTCTCCAC GGTGAGAACG chrVIII:475510-475908 + 54 1.31e-10 AAATGTTCCA ACCGAGGATCGAACTCGGGACCTTTG CCGTGTGAAG chrXVI:768970-769482 + 38 1.60e-10 GAACTCCTCA TAGGGGGCTCGAACCCCTGACATTTC GGTATCCTTG chrXVI:622194-622856 + 72 1.60e-10 AAATGCGAAT TCTGTGGATCGAACACAGGACCTCCA GAT chrXVI:559953-560472 + 43 1.60e-10 AAATGCGAAT TCTGTGGATCGAACACAGGACCTCCA GATAACTTGA chrXI:578715-579335 - 53 1.60e-10 GAACTCCTCA TAGGGGGCTCGAACCCCTGACATTTC GGTATCCTTG chrVIII:237712-238084 + 7 1.60e-10 GCGAAT TCTGTGGATCGAACACAGGACCTCCA GATAACTTGA chrVII:440174-441350 + 11 1.60e-10 TTATGCGAAT TCTGTGGATCGAACACAGGACCTCCA GATAACTTGA chrXIV:96015-96455 + 63 1.77e-10 ATTTGAGCGG TACGAGAATCGAACCCGTGTCCCCAC CTTGGAAGGG chrV:130877-131387 + 7 1.77e-10 GGTCTT ACCCGGATTCGAACCGGGGTTGTTCG GATCAAAACC chrXIII:480408-480906 + 21 1.95e-10 AGAAGCCCTG TAGGGGGCTCGAACCCCTAACCTTAT GATTAAGAGT chrVII:121983-122694 - 21 1.95e-10 AATAGCCCTG TAGGGGGCTCGAACCCCTAACCTTAT GATTAAGAGT chrIX:299969-300514 + 44 1.95e-10 GATAGCCCTG TAGGGGGCTCGAACCCCTAACCTTAT GATTAAGAGT chrX:374200-374892 + 17 2.37e-10 AAGCACTCAC GATGGGGGTCGAACCCATAATCTTCT GATTAGAAGT chrIV:568384-569530 - 14 2.37e-10 AAGCACTCAC GATGGGGGTCGAACCCATAATCTTCT GATTAGAAGT chrII:405656-406213 - 33 2.37e-10 AAGCACTCAC GATGGGGGTCGAACCCATAATCTTCT GATTAGAAGT chrVIII:145752-146776 + 35 2.60e-10 GATTGGACGA GTCCGGAATCGAACCGGAGACCTCTC CCATGCTAAG chrII:644957-645439 - 58 4.96e-10 TAACTCCGAT ACGGGGAGTCGAACCCCGGTCTCCAC GGTGAAAGCG chrVIII:115973-116298 + 29 2.06e-09 AAATGCTTCC AATCGGATTTGAACCGATGATCTCCA CATTACTAGT chrIX:174716-175391 - 68 2.06e-09 TGCTTCC AATCGGATTTGAACCGATGATCTCCA CATTACTAGT chrXVI:338418-339313 + 40 2.23e-09 ATTTAGCGCC GCTCGGTTTCGATCCGAGGACATCAG GGTTATGAGC chrIII:149720-150256 - 21 2.23e-09 TAATAGCGCC GCTCGGTTTCGATCCGAGGACATCAG GGTTATGAGC chrXI:46370-47075 + 70 3.51e-09 AAATGCCCTC TGTGGGAATTGAACCCACGATCCCCG CATTA chrXII:962593-963339 - 57 1.39e-08 ACGGTTGTCC GCGCGAGTTCGAACCTCGCATCCTTC AGTATTTTTT chrII:347393-347979 + 24 1.39e-08 ACGGTTGTCC GCGCGAGTTCGAACCTCGCATCCTTC AGTAATATTT chrIV:884250-884635 - 69 1.58e-08 GCTCGA GGTGGGGTTTGAACCCACGACGGTCG CGTTGCTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KMBSGGRATCGAACCSVKGACCTYMB MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123414-123802 1.4e-15 25_[+1]_49 chrXVI:860132-860679 1.3e-12 61_[-1]_13 chrXV:281697-282762 1.3e-12 22_[-1]_52 chrXV:226452-226883 1.3e-12 [+1]_74 chrVII:845356-846043 1.3e-12 37_[-1]_37 chrIV:83325-83806 1.3e-12 70_[-1]_4 chrXVI:819200-819932 4.1e-12 53_[-1]_21 chrV:443055-443341 4.1e-12 60_[+1]_14 chrXII:214696-215063 1.6e-11 60_[+1]_14 chrV:311778-312295 1.6e-11 43_[+1]_31 chrXIII:195930-196301 2.1e-11 9_[+1]_65 chrXIII:420333-420852 3.3e-11 52_[+1]_22 chrXIII:372174-372769 3.3e-11 30_[+1]_44 chrXI:379465-379927 3.3e-11 74_[-1] chrVII:823352-823690 3.3e-11 51_[-1]_23 chrIII:168115-168554 8.7e-11 23_[+1]_51 chrIX:197250-198070 1.2e-10 20_[-1]_54 chrVIII:475510-475908 1.3e-10 53_[+1]_21 chrXVI:768970-769482 1.6e-10 37_[+1]_37 chrXVI:622194-622856 1.6e-10 71_[+1]_3 chrXVI:559953-560472 1.6e-10 42_[+1]_32 chrXI:578715-579335 1.6e-10 52_[-1]_22 chrVIII:237712-238084 1.6e-10 6_[+1]_68 chrVII:440174-441350 1.6e-10 10_[+1]_64 chrXIV:96015-96455 1.8e-10 62_[+1]_12 chrV:130877-131387 1.8e-10 6_[+1]_68 chrXIII:480408-480906 2e-10 20_[+1]_54 chrVII:121983-122694 2e-10 20_[-1]_54 chrIX:299969-300514 2e-10 43_[+1]_31 chrX:374200-374892 2.4e-10 16_[+1]_58 chrIV:568384-569530 2.4e-10 13_[-1]_61 chrII:405656-406213 2.4e-10 32_[-1]_42 chrVIII:145752-146776 2.6e-10 34_[+1]_40 chrII:644957-645439 5e-10 57_[-1]_17 chrVIII:115973-116298 2.1e-09 28_[+1]_46 chrIX:174716-175391 2.1e-09 67_[-1]_7 chrXVI:338418-339313 2.2e-09 39_[+1]_35 chrIII:149720-150256 2.2e-09 20_[-1]_54 chrXI:46370-47075 3.5e-09 69_[+1]_5 chrXII:962593-963339 1.4e-08 56_[-1]_18 chrII:347393-347979 1.4e-08 23_[+1]_51 chrIV:884250-884635 1.6e-08 68_[-1]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KMBSGGRATCGAACCSVKGACCTYMB MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KMBSGGRATCGAACCSVKGACCTYMB width=26 seqs=42 chrIII:123414-123802 ( 26) GCCGGGACTCGAACCCGGGACCTCCC 1 chrXVI:860132-860679 ( 62) GCCCGGAATCGAACCGGGGGCCCAAC 1 chrXV:281697-282762 ( 23) GCCCGGAATCGAACCGGGGGCCCAAC 1 chrXV:226452-226883 ( 1) GCCCGGAATCGAACCGGGGGCCCAAC 1 chrVII:845356-846043 ( 38) GCCCGGAATCGAACCGGGGGCCCAAC 1 chrIV:83325-83806 ( 71) GCCCGGAATCGAACCGGGGGCCCAAC 1 chrXVI:819200-819932 ( 54) TAGCGGGATCGAACCGCTGATCCCCG 1 chrV:443055-443341 ( 61) TAGCGGGATCGAACCGCTGATCCCCG 1 chrXII:214696-215063 ( 61) AACCGGAATCGAACCGATGACCTCTT 1 chrV:311778-312295 ( 44) AACCGGAATCGAACCGATGACCTCTT 1 chrXIII:195930-196301 ( 10) GCTGGGAATTGAACCCAGGGCCTCTC 1 chrXIII:420333-420852 ( 53) GCCCAGGATCGAACTGGGGACGTTCT 1 chrXIII:372174-372769 ( 31) GCCCAGGATCGAACTGGGGACGTTCT 1 chrXI:379465-379927 ( 75) GCCCAGGATCGAACTGGGGACGTTCT 1 chrVII:823352-823690 ( 52) GCCCAGGATCGAACTGGGGACGTTCT 1 chrIII:168115-168554 ( 24) ACCCGGATTCGAACCGGGGTTGTCCG 1 chrIX:197250-198070 ( 21) GCGGGGAGTCGAACCCCGGTCTCCAC 1 chrVIII:475510-475908 ( 54) ACCGAGGATCGAACTCGGGACCTTTG 1 chrXVI:768970-769482 ( 38) TAGGGGGCTCGAACCCCTGACATTTC 1 chrXVI:622194-622856 ( 72) TCTGTGGATCGAACACAGGACCTCCA 1 chrXVI:559953-560472 ( 43) TCTGTGGATCGAACACAGGACCTCCA 1 chrXI:578715-579335 ( 53) TAGGGGGCTCGAACCCCTGACATTTC 1 chrVIII:237712-238084 ( 7) TCTGTGGATCGAACACAGGACCTCCA 1 chrVII:440174-441350 ( 11) TCTGTGGATCGAACACAGGACCTCCA 1 chrXIV:96015-96455 ( 63) TACGAGAATCGAACCCGTGTCCCCAC 1 chrV:130877-131387 ( 7) ACCCGGATTCGAACCGGGGTTGTTCG 1 chrXIII:480408-480906 ( 21) TAGGGGGCTCGAACCCCTAACCTTAT 1 chrVII:121983-122694 ( 21) TAGGGGGCTCGAACCCCTAACCTTAT 1 chrIX:299969-300514 ( 44) TAGGGGGCTCGAACCCCTAACCTTAT 1 chrX:374200-374892 ( 17) GATGGGGGTCGAACCCATAATCTTCT 1 chrIV:568384-569530 ( 14) GATGGGGGTCGAACCCATAATCTTCT 1 chrII:405656-406213 ( 33) GATGGGGGTCGAACCCATAATCTTCT 1 chrVIII:145752-146776 ( 35) GTCCGGAATCGAACCGGAGACCTCTC 1 chrII:644957-645439 ( 58) ACGGGGAGTCGAACCCCGGTCTCCAC 1 chrVIII:115973-116298 ( 29) AATCGGATTTGAACCGATGATCTCCA 1 chrIX:174716-175391 ( 68) AATCGGATTTGAACCGATGATCTCCA 1 chrXVI:338418-339313 ( 40) GCTCGGTTTCGATCCGAGGACATCAG 1 chrIII:149720-150256 ( 21) GCTCGGTTTCGATCCGAGGACATCAG 1 chrXI:46370-47075 ( 70) TGTGGGAATTGAACCCACGATCCCCG 1 chrXII:962593-963339 ( 57) GCGCGAGTTCGAACCTCGCATCCTTC 1 chrII:347393-347979 ( 24) GCGCGAGTTCGAACCTCGCATCCTTC 1 chrIV:884250-884635 ( 69) GGTGGGGTTTGAACCCACGACGGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KMBSGGRATCGAACCSVKGACCTYMB MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 33525 bayes= 9.94402 E= 1.6e-163 -74 -1204 145 -4 17 164 -194 -373 -1204 115 52 7 -1204 152 138 -1204 -115 -1204 206 -173 -273 -1204 238 -1204 43 -1204 152 -273 72 -36 -62 -57 -1204 -1204 -1204 166 -1204 227 -1204 -141 -1204 -1204 245 -1204 166 -1204 -1204 -1204 159 -1204 -1204 -273 -1204 245 -1204 -1204 -173 210 -1204 -141 -1204 138 138 -273 26 52 97 -1204 -373 -194 164 17 -115 -194 215 -1204 122 -1204 -36 -141 -1204 197 -1204 -15 -173 192 -13 -273 -1204 76 -294 107 -141 138 -1204 35 -4 138 -1204 -57 -115 97 23 -15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KMBSGGRATCGAACCSVKGACCTYMB MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 42 E= 1.6e-163 0.190476 0.000000 0.500000 0.309524 0.357143 0.571429 0.047619 0.023810 0.000000 0.404762 0.261905 0.333333 0.000000 0.523810 0.476190 0.000000 0.142857 0.000000 0.761905 0.095238 0.047619 0.000000 0.952381 0.000000 0.428571 0.000000 0.523810 0.047619 0.523810 0.142857 0.119048 0.214286 0.000000 0.000000 0.000000 1.000000 0.000000 0.880952 0.000000 0.119048 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.952381 0.000000 0.000000 0.047619 0.000000 1.000000 0.000000 0.000000 0.095238 0.785714 0.000000 0.119048 0.000000 0.476190 0.476190 0.047619 0.380952 0.261905 0.357143 0.000000 0.023810 0.047619 0.571429 0.357143 0.142857 0.047619 0.809524 0.000000 0.738095 0.000000 0.142857 0.119048 0.000000 0.714286 0.000000 0.285714 0.095238 0.690476 0.166667 0.047619 0.000000 0.309524 0.023810 0.666667 0.119048 0.476190 0.000000 0.404762 0.309524 0.476190 0.000000 0.214286 0.142857 0.357143 0.214286 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KMBSGGRATCGAACCSVKGACCTYMB MEME-1 regular expression -------------------------------------------------------------------------------- [GT][CA][CTG][CG]GG[GA][AT]TCGAACC[CG][AGC][GT]GA[CT]C[TC][CT][CAT][CTG] -------------------------------------------------------------------------------- Time 189.71 secs. ******************************************************************************** ******************************************************************************** MOTIF WGGKYNYKTGGCCBAGTKGKTWAAGSCVYM MEME-2 width = 30 sites = 38 llr = 779 E-value = 1.1e-132 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGGKYNYKTGGCCBAGTKGKTWAAGSCVYM MEME-2 Description -------------------------------------------------------------------------------- Simplified A 5::1131212:::19:::::2587:::423 pos.-specific C ::31424:::17731:11::2::::57345 probability G :a732314:89::3:a:6a51:22843212 matrix T 5::433449::333::83:555:121:13: bits 2.5 * * 2.2 * * * 2.0 * * * * 1.7 * ** * * Relative 1.5 * **** ** * * * Entropy 1.2 ** ***** ** * * * (29.6 bits) 1.0 ** ***** *** ** * *** 0.7 ** ***** ****** * *** * 0.5 *** ****** ****** ****** * 0.2 ***** ************************ 0.0 ------------------------------ Multilevel AGGTCATTTGGCCGAGTGGGTTAAGCCACC consensus T CGTGCG TTC T TCAG GGCTA sequence T T G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGKYNYKTGGCCBAGTKGKTWAAGSCVYM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrII:197119-197842 + 63 2.74e-15 CCAGTAATCA AGGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAAT chrXVI:819200-819932 + 12 3.48e-15 AACAATAGAA TGGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXIV:602056-602528 + 69 3.48e-15 CAGATAACAA TGGTCTCTTGGCCCAGTTGGTTAAGGCACC GT chrIX:182722-184290 - 29 3.48e-15 AACAAATTCC TGGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrX:617690-618180 + 33 1.65e-13 CAACAAACAA TGGGAGTTTGGCCGAGTGGTTTAAGGCGTC AGATTTAGGT chrXIII:504607-505231 + 25 2.76e-13 AACAGATAAG TGGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrXII:628133-628646 + 43 2.76e-13 AACAAATAAG TGGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrVII:700210-701154 + 42 1.94e-11 ACAGATGAAT TGGTACTCTGGCCGAGTGGTCTAAGGCGTC AGGTCGAGGT chrXI:379465-379927 + 33 2.77e-11 ACAGATTAAT AGGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXIII:372174-372769 - 69 3.11e-11 CC TGGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrX:523756-524423 - 26 3.11e-11 AAGAGATTAA AGGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrVII:823352-823690 + 10 3.11e-11 CAATAAGAG TGGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrVII:412132-412595 - 26 3.11e-11 ATCAAAAAAC TGGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXI:84008-84429 + 39 3.48e-11 AAAATTTGTA TGGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrX:424285-424726 - 32 3.48e-11 TTAAATAAGA TGGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrVIII:132803-133364 - 46 3.48e-11 ATATAATAAG TGGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrVIII:115973-116298 - 66 1.03e-10 AATAG AGCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrIX:325438-326074 + 41 1.03e-10 GTAAAATACG AGCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrIX:174716-175391 + 27 1.03e-10 AACAAGTACG AGCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrIII:227713-228206 + 32 1.72e-10 CAAATCGAAA TGGCACTATGGCCGAGTGGTTAAGGCGAGA GACTCGAATG chrIV:1150690-1151222 - 7 3.70e-10 AAAGTGTTTC AGTCCCAGTGGCCGAGTGGTTAAGGCGATG CCTGCT chrXII:656840-657213 - 2 4.06e-10 ACAAGAAAAT TGGGCGTGTGGCGTAGTCGGTAGCGCGCTC C chrXIV:374638-375080 + 59 4.45e-10 CAGAAAAATA AGCGGACTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrVIII:358309-358796 - 39 6.95e-10 ACAAATAGTA AGCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrVIII:237712-238084 - 63 6.95e-10 AAATAGTA AGCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrVII:440174-441350 - 67 7.58e-10 TATA TGCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXII:92415-92714 + 33 9.81e-10 CAAGTTAATA AGGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrVIII:388680-389229 - 63 1.07e-09 CAGATACA TGGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrXVI:860132-860679 + 23 1.16e-09 GTAAATAACA AGCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXV:226452-226883 - 36 1.16e-09 CAAGAAATTC AGCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrIV:83325-83806 + 32 1.16e-09 AAGTTCACTT AGCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXII:605151-605650 - 54 1.75e-09 CTTTCGAAAA TGCTCGTGTAGCTCAGTGGTTAGAGCTTCG TGCTTATAGC chrVII:730916-731408 + 24 1.75e-09 ATAGTCAAAA AGACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrIII:123414-123802 - 62 1.31e-08 TTTCAAAGG AGGGCGTGTGGTCTAGAGGTATGATTCTCG CTTAGGGTGC chrII:326506-327233 - 18 1.31e-08 ATCGAGTTCC GGGTCCAATGGTCCAGTGGTTCAAGACGTC GCCTTTACAC chrXII:167641-168288 + 40 4.91e-08 CGACAACTGC AGGACTCGAACCTGCGCGGGCAAAGCCCAA AAGATTTCTA chrII:226974-227341 - 10 4.91e-08 CGACAACTGC AGGACTCGAACCTGCGCGGGCAAAGCCCAA AAGATTTCT chrIII:145-1524 + 55 6.80e-08 ATCATTATGC ACGGCACTTGCCTCAGCGGTCTATACCCTG TGCCATTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGKYNYKTGGCCBAGTKGKTWAAGSCVYM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:197119-197842 2.7e-15 62_[+2]_8 chrXVI:819200-819932 3.5e-15 11_[+2]_59 chrXIV:602056-602528 3.5e-15 68_[+2]_2 chrIX:182722-184290 3.5e-15 28_[-2]_42 chrX:617690-618180 1.6e-13 32_[+2]_38 chrXIII:504607-505231 2.8e-13 24_[+2]_46 chrXII:628133-628646 2.8e-13 42_[+2]_28 chrVII:700210-701154 1.9e-11 41_[+2]_29 chrXI:379465-379927 2.8e-11 32_[+2]_38 chrXIII:372174-372769 3.1e-11 68_[-2]_2 chrX:523756-524423 3.1e-11 25_[-2]_45 chrVII:823352-823690 3.1e-11 9_[+2]_61 chrVII:412132-412595 3.1e-11 25_[-2]_45 chrXI:84008-84429 3.5e-11 38_[+2]_32 chrX:424285-424726 3.5e-11 31_[-2]_39 chrVIII:132803-133364 3.5e-11 45_[-2]_25 chrVIII:115973-116298 1e-10 65_[-2]_5 chrIX:325438-326074 1e-10 40_[+2]_30 chrIX:174716-175391 1e-10 26_[+2]_44 chrIII:227713-228206 1.7e-10 31_[+2]_39 chrIV:1150690-1151222 3.7e-10 6_[-2]_64 chrXII:656840-657213 4.1e-10 1_[-2]_69 chrXIV:374638-375080 4.4e-10 58_[+2]_12 chrVIII:358309-358796 7e-10 38_[-2]_32 chrVIII:237712-238084 7e-10 62_[-2]_8 chrVII:440174-441350 7.6e-10 66_[-2]_4 chrXII:92415-92714 9.8e-10 32_[+2]_38 chrVIII:388680-389229 1.1e-09 62_[-2]_8 chrXVI:860132-860679 1.2e-09 22_[+2]_48 chrXV:226452-226883 1.2e-09 35_[-2]_35 chrIV:83325-83806 1.2e-09 31_[+2]_39 chrXII:605151-605650 1.7e-09 53_[-2]_17 chrVII:730916-731408 1.7e-09 23_[+2]_47 chrIII:123414-123802 1.3e-08 61_[-2]_9 chrII:326506-327233 1.3e-08 17_[-2]_53 chrXII:167641-168288 4.9e-08 39_[+2]_31 chrII:226974-227341 4.9e-08 9_[-2]_61 chrIII:145-1524 6.8e-08 54_[+2]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGKYNYKTGGCCBAGTKGKTWAAGSCVYM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGGKYNYKTGGCCBAGTKGKTWAAGSCVYM width=30 seqs=38 chrII:197119-197842 ( 63) AGGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXVI:819200-819932 ( 12) TGGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXIV:602056-602528 ( 69) TGGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrIX:182722-184290 ( 29) TGGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrX:617690-618180 ( 33) TGGGAGTTTGGCCGAGTGGTTTAAGGCGTC 1 chrXIII:504607-505231 ( 25) TGGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrXII:628133-628646 ( 43) TGGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrVII:700210-701154 ( 42) TGGTACTCTGGCCGAGTGGTCTAAGGCGTC 1 chrXI:379465-379927 ( 33) AGGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXIII:372174-372769 ( 69) TGGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrX:523756-524423 ( 26) AGGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrVII:823352-823690 ( 10) TGGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrVII:412132-412595 ( 26) TGGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXI:84008-84429 ( 39) TGGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrX:424285-424726 ( 32) TGGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrVIII:132803-133364 ( 46) TGGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrVIII:115973-116298 ( 66) AGCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrIX:325438-326074 ( 41) AGCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrIX:174716-175391 ( 27) AGCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrIII:227713-228206 ( 32) TGGCACTATGGCCGAGTGGTTAAGGCGAGA 1 chrIV:1150690-1151222 ( 7) AGTCCCAGTGGCCGAGTGGTTAAGGCGATG 1 chrXII:656840-657213 ( 2) TGGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXIV:374638-375080 ( 59) AGCGGACTTAGCTCAGTTGGGAGAGCGCCA 1 chrVIII:358309-358796 ( 39) AGCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrVIII:237712-238084 ( 63) AGCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrVII:440174-441350 ( 67) TGCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrXII:92415-92714 ( 33) AGGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrVIII:388680-389229 ( 63) TGGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrXVI:860132-860679 ( 23) AGCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXV:226452-226883 ( 36) AGCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrIV:83325-83806 ( 32) AGCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXII:605151-605650 ( 54) TGCTCGTGTAGCTCAGTGGTTAGAGCTTCG 1 chrVII:730916-731408 ( 24) AGACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrIII:123414-123802 ( 62) AGGGCGTGTGGTCTAGAGGTATGATTCTCG 1 chrII:326506-327233 ( 18) GGGTCCAATGGTCCAGTGGTTCAAGACGTC 1 chrXII:167641-168288 ( 40) AGGACTCGAACCTGCGCGGGCAAAGCCCAA 1 chrII:226974-227341 ( 10) AGGACTCGAACCTGCGCGGGCAAAGCCCAA 1 chrIII:145-1524 ( 55) ACGGCACTTGCCTCAGCGGTCTATACCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGKYNYKTGGCCBAGTKGKTWAAGSCVYM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 31737 bayes= 10.6025 E= 1.1e-132 66 -1189 -279 58 -1189 -279 241 -1189 -359 66 185 -359 -159 -47 90 41 -127 129 -21 -27 -27 20 53 -27 -127 111 -180 41 -101 -279 111 41 -259 -1189 -1189 158 -78 -1189 216 -1189 -1189 -121 233 -1189 -1189 196 -1189 -13 -1189 190 -279 -13 -159 66 79 -13 158 -180 -1189 -1189 -1189 -1189 245 -1189 -359 -47 -1189 141 -1189 -47 160 -1 -1189 -1189 245 -1189 -1189 -1189 145 66 -101 20 -80 73 58 -279 -1189 66 127 -1189 37 -1189 105 -279 1 -127 -359 -1189 216 -101 -359 145 111 -201 -1189 185 79 -359 32 66 20 -159 -78 129 -121 -13 -1 145 1 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGKYNYKTGGCCBAGTKGKTWAAGSCVYM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 38 E= 1.1e-132 0.500000 0.000000 0.026316 0.473684 0.000000 0.026316 0.973684 0.000000 0.026316 0.289474 0.657895 0.026316 0.105263 0.131579 0.342105 0.421053 0.131579 0.447368 0.157895 0.263158 0.263158 0.210526 0.263158 0.263158 0.131579 0.394737 0.052632 0.421053 0.157895 0.026316 0.394737 0.421053 0.052632 0.000000 0.000000 0.947368 0.184211 0.000000 0.815789 0.000000 0.000000 0.078947 0.921053 0.000000 0.000000 0.710526 0.000000 0.289474 0.000000 0.684211 0.026316 0.289474 0.105263 0.289474 0.315789 0.289474 0.947368 0.052632 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.026316 0.131579 0.000000 0.842105 0.000000 0.131579 0.552632 0.315789 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.157895 0.210526 0.105263 0.526316 0.473684 0.026316 0.000000 0.500000 0.763158 0.000000 0.236842 0.000000 0.657895 0.026316 0.184211 0.131579 0.026316 0.000000 0.815789 0.157895 0.026316 0.500000 0.394737 0.078947 0.000000 0.657895 0.315789 0.026316 0.394737 0.289474 0.210526 0.105263 0.184211 0.447368 0.078947 0.289474 0.315789 0.500000 0.184211 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGKYNYKTGGCCBAGTKGKTWAAGSCVYM MEME-2 regular expression -------------------------------------------------------------------------------- [AT]G[GC][TG][CT][AGTC][TC][TG]TGG[CT][CT][GCT]AGT[GT]G[GT][TC][TA][AG]AG[CG][CG][ACG][CT][CA] -------------------------------------------------------------------------------- Time 369.16 secs. ******************************************************************************** ******************************************************************************** MOTIF ATAGTKTAATGGTYAKMAYGKBCGSTTKTC MEME-3 width = 30 sites = 13 llr = 377 E-value = 1.4e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATAGTKTAATGGTYAKMAYGKBCGSTTKTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:a::::a7:::::a:5a:2::2:::::1: pos.-specific C :::::::::3::35::5:5::27352:2:8 probability G :::a:5::3:aa:::5:::555175::5:2 matrix T :a::a5a::7::75:5::5253:::8a49: bits 2.5 * ** 2.2 * ** 2.0 * ** 1.7 ***** ** ** * * * * Relative 1.5 ***** ** ** * * ** * * Entropy 1.2 ***** ** ** * * *** * ** (41.8 bits) 1.0 ******************* * ***** ** 0.7 ****************************** 0.5 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel ATAGTGTAATGGTTATCACGTGCGCTTGTC consensus T GC CC GA TAGTACGC T G sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTKTAATGGTYAKMAYGKBCGSTTKTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXI:513193-513512 - 66 6.26e-16 CCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGTC GCGTGCCAGA chrX:355196-355741 + 44 6.26e-16 TTCTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGTC GCGTGCCAGA chrX:204454-205032 + 48 6.26e-16 AAAATCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGTC GCGTGCCAGA chrVII:544406-544883 - 19 6.26e-16 TTCTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGTC GCGTGCCAGA chrIX:336139-336685 - 23 6.26e-16 CAAATCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGTC GCGTGCCAGA chrIV:568384-569530 + 63 6.26e-16 TTCTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGTC GCGTGCCA chrV:130877-131387 - 36 1.35e-13 AAGAGGTTTT ATAGTGTAGTGGTTATCACTTTCGGTTTTG ATCCGAACAA chrIII:168115-168554 - 53 1.35e-13 TCCTGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTTTTG ATCCGGACAA chrXIII:808110-808524 - 15 1.84e-13 AAAAGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTTCTG ATCCGAACAA chrXI:140766-141388 - 27 5.31e-13 GTAATCCGAT ATAGTGTAACGGCTATCACATCACGCTTTC ACCGTGGAGA chrIX:370250-370586 + 55 5.31e-13 ATAATCCGAT ATAGTGTAACGGCTATCACATCACGCTTTC ACCGTGGAGA chrII:644957-645439 + 25 5.31e-13 ATTATCCGAT ATAGTGTAACGGCTATCACATCACGCTTTC ACCGTGGAGA chrIV:1075319-1075771 - 14 1.02e-12 TATTGTTCCA ATAGTGTAGCGGCTATCACGTTGCCTTCAC ACGGCAAAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTKTAATGGTYAKMAYGKBCGSTTKTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXI:513193-513512 6.3e-16 65_[-3]_5 chrX:355196-355741 6.3e-16 43_[+3]_27 chrX:204454-205032 6.3e-16 47_[+3]_23 chrVII:544406-544883 6.3e-16 18_[-3]_52 chrIX:336139-336685 6.3e-16 22_[-3]_48 chrIV:568384-569530 6.3e-16 62_[+3]_8 chrV:130877-131387 1.4e-13 35_[-3]_35 chrIII:168115-168554 1.4e-13 52_[-3]_18 chrXIII:808110-808524 1.8e-13 14_[-3]_56 chrXI:140766-141388 5.3e-13 26_[-3]_44 chrIX:370250-370586 5.3e-13 54_[+3]_16 chrII:644957-645439 5.3e-13 24_[+3]_46 chrIV:1075319-1075771 1e-12 13_[-3]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTKTAATGGTYAKMAYGKBCGSTTKTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATAGTKTAATGGTYAKMAYGKBCGSTTKTC width=30 seqs=13 chrXI:513193-513512 ( 66) ATAGTTTAATGGTCAGAATGGGCGCTTGTC 1 chrX:355196-355741 ( 44) ATAGTTTAATGGTCAGAATGGGCGCTTGTC 1 chrX:204454-205032 ( 48) ATAGTTTAATGGTCAGAATGGGCGCTTGTC 1 chrVII:544406-544883 ( 19) ATAGTTTAATGGTCAGAATGGGCGCTTGTC 1 chrIX:336139-336685 ( 23) ATAGTTTAATGGTCAGAATGGGCGCTTGTC 1 chrIV:568384-569530 ( 63) ATAGTTTAATGGTCAGAATGGGCGCTTGTC 1 chrV:130877-131387 ( 36) ATAGTGTAGTGGTTATCACTTTCGGTTTTG 1 chrIII:168115-168554 ( 53) ATAGTGTAGTGGTTATCACTTTCGGTTTTG 1 chrXIII:808110-808524 ( 15) ATAGTGTAGTGGTTATCACTTTCGGTTCTG 1 chrXI:140766-141388 ( 27) ATAGTGTAACGGCTATCACATCACGCTTTC 1 chrIX:370250-370586 ( 55) ATAGTGTAACGGCTATCACATCACGCTTTC 1 chrII:644957-645439 ( 25) ATAGTGTAACGGCTATCACATCACGCTTTC 1 chrIV:1075319-1075771 ( 14) ATAGTGTAGCGGCTATCACGTTGCCTTCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTKTAATGGTYAKMAYGKBCGSTTKTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 31737 bayes= 11.0083 E= 1.4e-052 166 -1035 -1035 -1035 -1035 -1035 -1035 166 166 -1035 -1035 -1035 -1035 -1035 245 -1035 -1035 -1035 -1035 166 -1035 -1035 156 54 -1035 -1035 -1035 166 166 -1035 -1035 -1035 113 -1035 75 -1035 -1035 75 -1035 113 -1035 -1035 245 -1035 -1035 -1035 245 -1035 -1035 75 -1035 113 -1035 134 -1035 76 166 -1035 -1035 -1035 -1035 -1035 134 76 54 156 -1035 -1035 166 -1035 -1035 -1035 -1035 156 -1035 54 -46 -1035 156 -46 -1035 -1035 134 76 -1035 34 134 -4 -46 192 -125 -1035 -1035 75 192 -1035 -1035 156 134 -1035 -1035 34 -1035 128 -1035 -1035 -1035 166 -1035 -25 134 28 -204 -1035 -1035 154 -1035 207 34 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTKTAATGGTYAKMAYGKBCGSTTKTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 13 E= 1.4e-052 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.538462 0.461538 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.692308 0.000000 0.307692 0.000000 0.000000 0.307692 0.000000 0.692308 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.307692 0.000000 0.692308 0.000000 0.461538 0.000000 0.538462 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.461538 0.538462 0.461538 0.538462 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.538462 0.000000 0.461538 0.230769 0.000000 0.538462 0.230769 0.000000 0.000000 0.461538 0.538462 0.000000 0.230769 0.461538 0.307692 0.230769 0.692308 0.076923 0.000000 0.000000 0.307692 0.692308 0.000000 0.000000 0.538462 0.461538 0.000000 0.000000 0.230769 0.000000 0.769231 0.000000 0.000000 0.000000 1.000000 0.000000 0.153846 0.461538 0.384615 0.076923 0.000000 0.000000 0.923077 0.000000 0.769231 0.230769 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAGTKTAATGGTYAKMAYGKBCGSTTKTC MEME-3 regular expression -------------------------------------------------------------------------------- ATAGT[GT]TA[AG][TC]GG[TC][TC]A[TG][CA]A[CT][GAT][TG][GTC][CA][GC][CG][TC]T[GT]T[CG] -------------------------------------------------------------------------------- Time 543.99 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:81907-82297 2.22e-01 100 chrI:138853-139356 9.91e-01 100 chrI:166174-166821 6.04e-01 100 chrII:6817-7086 8.58e-01 100 chrII:9460-9981 9.25e-01 100 chrII:36223-37235 4.37e-01 100 chrII:44948-45365 2.09e-01 100 chrII:59515-61243 6.57e-01 100 chrII:89636-90014 2.49e-01 100 chrII:165108-165387 1.44e-01 100 chrII:167879-168194 5.17e-02 100 chrII:181292-181695 3.16e-01 100 chrII:197119-197842 3.75e-11 62_[+2(2.74e-15)]_8 chrII:198528-199939 2.38e-01 100 chrII:226974-227341 3.74e-05 9_[-2(4.91e-08)]_61 chrII:266170-266781 7.12e-01 100 chrII:326506-327233 5.01e-07 17_[-2(1.31e-08)]_53 chrII:331786-333086 6.93e-01 100 chrII:347393-347979 2.52e-05 23_[+1(1.39e-08)]_51 chrII:350390-351044 6.72e-01 100 chrII:405656-406213 1.95e-06 32_[-1(2.37e-10)]_42 chrII:415503-415933 3.42e-01 100 chrII:477027-477761 2.78e-01 100 chrII:592834-593293 9.01e-02 3_[-3(8.15e-05)]_67 chrII:604106-606966 3.32e-01 100 chrII:644957-645439 1.96e-15 24_[+3(5.31e-13)]_3_[-1(4.96e-10)]_\ 17 chrIII:145-1524 2.13e-04 54_[+2(6.80e-08)]_16 chrIII:13956-15686 7.55e-01 100 chrIII:90784-91104 8.05e-01 100 chrIII:123414-123802 1.66e-16 25_[+1(1.44e-15)]_10_[-2(1.31e-08)]_\ 9 chrIII:127502-127880 7.81e-01 100 chrIII:142301-143347 5.12e-01 100 chrIII:149720-150256 5.49e-06 20_[-1(2.23e-09)]_54 chrIII:150643-151607 3.64e-01 100 chrIII:162536-163900 7.10e-01 100 chrIII:168115-168554 8.93e-19 23_[+1(8.72e-11)]_3_[-3(1.35e-13)]_\ 18 chrIII:177192-178765 9.84e-01 100 chrIII:227713-228206 1.44e-06 31_[+2(1.72e-10)]_39 chrIII:295362-296335 7.15e-01 100 chrIII:308641-308973 9.84e-02 100 chrIV:83325-83806 1.98e-14 31_[+2(1.16e-09)]_9_[-1(1.34e-12)]_\ 4 chrIV:117144-118225 8.26e-01 100 chrIV:129186-131254 7.76e-01 100 chrIV:217050-218083 6.68e-01 100 chrIV:221648-222524 9.71e-01 100 chrIV:229287-230399 6.23e-01 100 chrIV:261914-262448 5.17e-01 100 chrIV:308011-309483 2.45e-01 100 chrIV:321626-321947 6.16e-01 100 chrIV:340532-341684 6.74e-01 100 chrIV:358015-358420 9.87e-01 100 chrIV:359106-359808 9.78e-01 100 chrIV:410200-410451 9.73e-01 100 chrIV:411236-411683 4.96e-01 100 chrIV:434042-435116 5.62e-01 100 chrIV:437529-438292 7.33e-01 100 chrIV:488488-488989 9.94e-01 100 chrIV:489660-491261 1.42e-01 35_[+1(6.20e-05)]_39 chrIV:519654-520504 6.52e-01 100 chrIV:520695-521111 6.37e-01 100 chrIV:538880-539248 5.38e-01 100 chrIV:568384-569530 2.11e-19 13_[-1(2.37e-10)]_23_[+3(6.26e-16)]_\ 8 chrIV:578964-580889 7.87e-01 100 chrIV:619553-620279 8.67e-01 100 chrIV:667794-668614 6.87e-02 100 chrIV:757473-758440 9.96e-02 100 chrIV:802589-802835 1.65e-01 100 chrIV:835901-836272 3.57e-01 100 chrIV:884250-884635 1.02e-05 68_[-1(1.58e-08)]_6 chrIV:945620-946634 1.80e-02 100 chrIV:992686-993206 3.85e-01 100 chrIV:1013423-1013965 9.53e-01 100 chrIV:1016955-1017656 8.91e-01 100 chrIV:1075319-1075771 3.93e-09 13_[-3(1.02e-12)]_57 chrIV:1094890-1095729 7.22e-01 100 chrIV:1150690-1151222 3.06e-06 6_[-2(3.70e-10)]_64 chrIV:1175574-1176907 7.27e-01 100 chrIV:1200766-1201971 9.90e-01 100 chrIV:1236462-1237993 3.77e-01 100 chrIV:1300705-1301344 9.22e-01 100 chrIV:1304966-1305849 6.19e-01 100 chrIV:1352016-1353293 6.43e-01 100 chrIV:1353719-1356044 4.92e-01 100 chrIV:1359259-1360813 5.11e-01 100 chrIV:1400896-1401908 6.33e-01 100 chrIV:1450604-1451264 5.70e-01 100 chrIV:1461129-1461834 2.10e-01 100 chrIX:67705-69542 5.80e-01 100 chrIX:99629-100052 7.58e-01 100 chrIX:109803-110354 3.85e-01 100 chrIX:110552-111577 9.41e-01 100 chrIX:174716-175391 2.30e-12 26_[+2(1.03e-10)]_11_[-1(2.06e-09)]_\ 7 chrIX:182722-184290 3.81e-11 28_[-2(3.48e-15)]_42 chrIX:197250-198070 1.55e-06 20_[-1(1.19e-10)]_54 chrIX:210681-210931 8.04e-01 100 chrIX:248564-249002 7.30e-01 100 chrIX:254192-254562 5.03e-01 100 chrIX:257364-258056 5.44e-01 100 chrIX:299969-300514 6.85e-07 43_[+1(1.95e-10)]_31 chrIX:315621-317629 4.88e-02 100 chrIX:324113-324723 8.88e-01 100 chrIX:325438-326074 1.95e-06 40_[+2(1.03e-10)]_30 chrIX:336139-336685 2.07e-12 22_[-3(6.26e-16)]_48 chrIX:370250-370586 3.80e-09 54_[+3(5.31e-13)]_16 chrV:6212-6753 7.55e-01 100 chrV:53497-54964 3.37e-01 100 chrV:61093-62139 4.90e-01 100 chrV:78096-79291 9.36e-03 69_[+2(5.14e-06)]_1 chrV:85113-87286 8.42e-01 100 chrV:99809-100279 9.29e-01 100 chrV:117171-118294 4.14e-01 100 chrV:130877-131387 2.56e-18 6_[+1(1.77e-10)]_3_[-3(1.35e-13)]_\ 35 chrV:135161-136145 4.61e-01 100 chrV:138486-140923 4.17e-01 100 chrV:176310-177451 7.73e-01 100 chrV:249779-250748 5.36e-01 100 chrV:270374-270659 9.08e-01 100 chrV:288014-288809 2.53e-01 100 chrV:305809-306905 5.48e-01 100 chrV:311778-312295 3.87e-08 43_[+1(1.64e-11)]_31 chrV:354793-355290 2.43e-02 100 chrV:361807-362484 7.68e-01 100 chrV:396119-397821 2.04e-01 100 chrV:423052-423607 5.07e-01 100 chrV:431039-432036 9.17e-01 100 chrV:434414-435141 6.72e-02 100 chrV:435395-435947 9.07e-01 100 chrV:438383-438925 6.91e-01 100 chrV:441801-442673 1.24e-01 100 chrV:443055-443341 1.17e-08 60_[+1(4.10e-12)]_14 chrV:469041-469732 8.66e-01 100 chrV:480382-482291 1.89e-01 100 chrV:485564-487642 9.78e-01 100 chrV:551006-551901 5.23e-01 100 chrVI:4530-4758 8.60e-01 100 chrVI:64170-65415 3.32e-01 100 chrVI:95460-95904 6.24e-02 100 chrVI:101384-101816 1.06e-02 49_[+3(4.71e-06)]_21 chrVI:136630-137813 6.33e-01 100 chrVI:157901-158585 1.52e-01 100 chrVI:162001-162395 7.35e-03 70_[+2(3.19e-05)] chrVI:166785-167718 8.02e-02 100 chrVI:180621-181261 6.53e-01 100 chrVI:191127-191754 6.04e-01 100 chrVI:210423-210929 2.96e-02 52_[-2(1.80e-05)]_18 chrVI:221340-222125 5.10e-01 100 chrVI:223383-224438 5.90e-02 100 chrVI:226528-227156 5.31e-01 100 chrVII:784-2155 7.82e-01 100 chrVII:110330-110788 2.78e-01 100 chrVII:115183-115747 5.75e-01 100 chrVII:121983-122694 8.42e-07 20_[-1(1.95e-10)]_54 chrVII:148285-149609 6.08e-01 100 chrVII:185188-185917 7.72e-01 100 chrVII:205066-206115 8.05e-01 100 chrVII:254132-254670 9.95e-01 100 chrVII:277006-278228 9.51e-01 100 chrVII:287166-287896 3.62e-01 100 chrVII:310310-312871 3.67e-01 100 chrVII:319208-320095 9.45e-02 47_[+1(9.01e-05)]_27 chrVII:328344-329234 6.59e-01 100 chrVII:364891-366669 8.54e-01 100 chrVII:371249-371479 5.21e-02 100 chrVII:405474-406197 5.61e-01 100 chrVII:412132-412595 4.40e-07 25_[-2(3.11e-11)]_45 chrVII:422865-423560 1.15e-01 100 chrVII:437038-437904 4.00e-01 100 chrVII:438547-439794 3.26e-01 100 chrVII:440174-441350 6.54e-13 10_[+1(1.60e-10)]_30_[-2(7.58e-10)]_\ 4 chrVII:480156-480668 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53_[+1(1.31e-10)]_21 chrVIII:505823-506234 9.99e-01 100 chrVIII:555715-556367 1.31e-01 100 chrVIII:556952-557160 9.23e-01 100 chrX:58963-59433 8.71e-01 100 chrX:73348-76497 6.70e-01 100 chrX:90002-90452 5.54e-01 100 chrX:115405-116222 1.41e-01 29_[+1(9.75e-05)]_45 chrX:157446-157917 1.81e-01 100 chrX:196509-197519 7.00e-01 100 chrX:204454-205032 2.03e-12 47_[+3(6.26e-16)]_23 chrX:215636-217251 8.56e-01 100 chrX:233021-234625 6.10e-01 100 chrX:349094-349418 9.39e-01 100 chrX:354158-354843 8.43e-01 100 chrX:355196-355741 2.11e-12 43_[+3(6.26e-16)]_27 chrX:374200-374892 1.15e-06 16_[+1(2.37e-10)]_58 chrX:378080-378587 8.55e-02 100 chrX:390593-391384 9.92e-01 100 chrX:391833-392095 3.84e-01 100 chrX:396053-397186 7.50e-01 100 chrX:414731-416623 4.78e-01 100 chrX:422394-423256 6.67e-01 100 chrX:424285-424726 4.90e-07 31_[-2(3.48e-11)]_39 chrX:517662-518150 3.94e-01 100 chrX:523756-524423 5.51e-08 25_[-2(3.11e-11)]_45 chrX:531031-532305 4.83e-01 100 chrX:538524-538793 6.88e-01 100 chrX:540716-542234 9.19e-01 100 chrX:542749-543832 2.52e-01 100 chrX:607758-608345 8.39e-01 100 chrX:608579-609022 2.07e-01 100 chrX:617690-618180 1.31e-10 32_[+2(1.65e-13)]_5_[+1(8.54e-05)]_\ 7 chrX:651204-651616 2.00e-01 100 chrX:702937-703660 5.15e-01 100 chrX:745020-745536 6.66e-01 100 chrXI:777-1099 7.29e-01 100 chrXI:46370-47075 3.90e-05 69_[+1(3.51e-09)]_5 chrXI:67797-68033 4.71e-01 100 chrXI:74415-75037 7.58e-01 100 chrXI:84008-84429 2.07e-07 38_[+2(3.48e-11)]_32 chrXI:108505-110145 3.92e-01 100 chrXI:140766-141388 6.56e-09 26_[-3(5.31e-13)]_44 chrXI:141739-141934 6.76e-01 100 chrXI:142207-142588 9.27e-03 45_[+3(1.70e-05)]_25 chrXI:158179-159595 3.44e-01 100 chrXI:162433-162759 9.18e-01 100 chrXI:202116-203174 3.62e-02 100 chrXI:219598-220118 5.54e-01 100 chrXI:301008-302080 9.41e-02 73_[-1(5.41e-05)]_1 chrXI:302674-303239 1.92e-01 100 chrXI:307979-308534 6.48e-01 100 chrXI:312023-314014 1.14e-01 100 chrXI:379465-379927 1.37e-15 32_[+2(2.77e-11)]_12_[-1(3.29e-11)] 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chrXII:1028183-1028567 8.59e-01 100 chrXII:1051629-1052219 9.07e-01 100 chrXIII:91503-92088 2.24e-01 100 chrXIII:131400-132126 7.78e-01 100 chrXIII:145726-146285 8.00e-01 100 chrXIII:168259-169020 9.76e-01 100 chrXIII:195930-196301 6.39e-08 9_[+1(2.08e-11)]_65 chrXIII:224072-224706 6.60e-01 100 chrXIII:225247-225750 6.56e-01 100 chrXIII:259018-259527 7.33e-01 100 chrXIII:288080-291049 3.95e-01 100 chrXIII:296226-298908 2.90e-01 100 chrXIII:320937-321631 9.60e-01 100 chrXIII:352013-352497 4.34e-01 100 chrXIII:362942-363827 5.41e-01 100 chrXIII:372174-372769 1.53e-15 30_[+1(3.29e-11)]_12_[-2(3.11e-11)]_\ 2 chrXIII:378869-379637 7.20e-01 100 chrXIII:420333-420852 8.72e-08 52_[+1(3.29e-11)]_22 chrXIII:463432-463880 6.37e-01 100 chrXIII:480408-480906 4.62e-08 20_[+1(1.95e-10)]_11_[-2(7.10e-05)]_\ 13 chrXIII:504607-505231 1.87e-09 24_[+2(2.76e-13)]_46 chrXIII:513659-513951 9.05e-01 100 chrXIII:550990-551813 6.97e-01 100 chrXIII:572424-573233 4.29e-01 100 chrXIII:586321-587421 3.89e-01 100 chrXIII:650806-651850 9.99e-01 100 chrXIII:652091-652863 1.01e-01 100 chrXIII:731568-733470 9.84e-01 100 chrXIII:747671-748563 9.52e-01 100 chrXIII:753050-755160 5.28e-01 100 chrXIII:761761-763092 4.84e-01 100 chrXIII:768140-768422 8.88e-01 100 chrXIII:808110-808524 5.54e-12 14_[-3(1.84e-13)]_56 chrXIII:837208-838462 4.98e-01 100 chrXIV:61928-64534 5.99e-01 100 chrXIV:96015-96455 2.51e-06 62_[+1(1.77e-10)]_12 chrXIV:102583-103732 5.25e-01 100 chrXIV:104599-105229 7.30e-01 100 chrXIV:241383-241813 9.54e-01 100 chrXIV:330447-331092 8.39e-01 100 chrXIV:374638-375080 4.22e-06 58_[+2(4.45e-10)]_12 chrXIV:375416-376025 1.40e-01 100 chrXIV:415136-416087 2.37e-01 100 chrXIV:442873-444236 3.52e-01 100 chrXIV:493898-495816 9.94e-01 100 chrXIV:498969-500668 9.10e-01 100 chrXIV:546541-547464 4.14e-01 100 chrXIV:560195-560788 7.99e-01 100 chrXIV:568055-568489 7.09e-01 100 chrXIV:569588-570046 3.20e-01 100 chrXIV:585520-586509 9.82e-01 100 chrXIV:602056-602528 2.12e-11 68_[+2(3.48e-15)]_2 chrXIV:631514-632011 9.32e-01 100 chrXIV:632498-632909 2.10e-01 100 chrXIV:715819-716621 7.53e-01 100 chrXIV:725031-726358 1.67e-01 100 chrXIV:783761-784313 5.02e-01 100 chrXV:79726-80150 2.97e-01 100 chrXV:80350-81146 3.58e-01 100 chrXV:92718-94807 1.49e-01 100 chrXV:109577-110020 2.25e-02 100 chrXV:110871-111268 6.64e-01 100 chrXV:113215-113881 8.05e-01 100 chrXV:161123-161571 2.25e-01 100 chrXV:167951-168519 9.48e-02 100 chrXV:216221-216709 2.23e-01 100 chrXV:226452-226883 1.98e-14 [+1(1.34e-12)]_9_[-2(1.16e-09)]_35 chrXV:227830-228576 9.04e-01 100 chrXV:253831-254079 2.86e-01 100 chrXV:274474-275020 2.25e-03 36_[-2(1.44e-05)]_34 chrXV:281697-282762 4.94e-09 22_[-1(1.34e-12)]_52 chrXV:287139-287470 8.83e-02 100 chrXV:287666-288386 9.12e-01 100 chrXV:300872-301634 7.92e-01 100 chrXV:340105-340771 5.92e-01 100 chrXV:353843-354807 1.94e-01 100 chrXV:438406-440226 9.39e-01 100 chrXV:464274-465135 6.44e-01 100 chrXV:487452-487732 6.21e-01 100 chrXV:504844-505522 7.83e-01 100 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******************************************************************************** CPU: kali.stanford.edu ********************************************************************************